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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Boertmann, D. M., Petersen, I. K., Haaning Nielsen, H. & Haase, E. J. (2019). Ivory gull survey in Greenland 2019. Aarhus University, DCE - Danish Centre for Environment and Energy. Scientific Report from DCE - Danish Centre for Environment and Energy No. 343 https://dce2.au.dk/pub/SR343.pdf

Wetterich, S., Davidson, T. A., Bobrov, A., Opel, T., Windirsch, T., Johansen, K. L., Gonzalez-Bergonzoni, I., Mosbech, A. & Jeppesen, E. (2019). Stable isotope signatures of Holocene syngenetic permafrost trace seabird presence in the Thule District (NW Greenland). Biogeosciences, 16(21), 4261-4275. https://doi.org/10.5194/bg-16-4261-2019, https://doi.org/10.5194/bg-16-4261-2019

Blazquez-Castro, A., Westberg, M., Bregnhøj, M., Breitenbach, T., Mogensen, D. J., Etzerodt, M. & Ogilby, P. R. (2020). Light-Initiated Oxidative Stress. In H. Sies (Ed.), Oxidative Stress: Eustress and Distress (pp. 363-388). Academic Press.

Ben Ltaief, L., Shcherbinin, M., Mandal, S., Krishnan, S. R., Laforge, A. C., Richter, R., Turchini, S., Zema, N., Pfeifer, T., Fasshauer, E., Sisourat, N. & Mudrich, M. (2019). Charge Exchange Dominates Long-Range Interatomic Coulombic Decay of Excited Metal-Doped Helium Nanodroplets. Journal of Physical Chemistry Letters, 10(21), 6904-6909. https://doi.org/10.1021/acs.jpclett.9b02726

Najarzadeh, Z., Mohammad-Beigi, H., Pedersen, J. N., Christiansen, G., Sønderby, T. V., Shojaosadati, S. A., Morshedi, D., Strømgaard, K., Meisl, G., Sutherland, D., Pedersen, J. S. & Otzen, D. (2019). Plant polyphenols inhibit functional amyloid and biofilm formation in Pseudomonas strains by directing monomers to off-pathway oligomers. Biomolecules, 9(11), Article 659. https://doi.org/10.3390/biom9110659

Foskolos, I., Aguilar de Soto, N., Madsen, P. T. & Johnson, M. (2019). Deep-diving pilot whales make cheap, but powerful, echolocation clicks with 50 µL of air. Scientific Reports, 9, Article 15720. https://doi.org/10.1038/s41598-019-51619-6

Silva, A. G., Li, Z., Morgen, P. & Pedersen, K. (2019). Atomically controlled growth of high current interest functional semiconductor systems. Abstract from 21st International Vacuum Congress, Malmö, Sweden.

Abu-Samha, M. & Madsen, L. B. (2019). Pulse-length effects in strong-field ionization of atoms by co-rotating and counter-rotating bicircular laser pulses. Physical Review A, 100(4), Article 043415. https://doi.org/10.1103/PhysRevA.100.043415

Pirmoradian, F. & Mølmer, K. (2019). Aging of a quantum battery. Physical Review A, 100(4), Article 043833. https://doi.org/10.1103/PhysRevA.100.043833

Mortensen, M. R., Skovsgaard, M. B. & Gothelf, K. V. (2019). Considerations on Probe Design for Affinity-Guided Protein Conjugation. ChemBioChem, 20(21), 2711-2728. https://doi.org/10.1002/cbic.201900157

Skipper, K. A., Hollensen, A. K., Antoniou, M. N. & Mikkelsen, J. G. (2019). Sustained transgene expression from sleeping beauty DNA transposons containing a core fragment of the HNRPA2B1-CBX3 ubiquitous chromatin opening element (UCOE). BMC Biotechnology, 19(1), Article 75. https://doi.org/10.1186/s12896-019-0570-2

Bregnhøj, M., Prete, M., Turkovic, V., Petersen, A. U., Nielsen, M. B., Madsen, M. & Ogilby, P. R. (2020). Oxygen-dependent photophysics and photochemistry of prototypical compounds for organic photovoltaics: inhibiting degradation initiated by singlet oxygen at a molecular level. Methods and Applications in Fluorescence, 8(1), Article 014001. https://doi.org/10.1088/2050-6120/ab4edc

Olsen, J., Dahlström, H. S. S. & Poulsen, B. (2019). The Chronology of Medieval Copenhagen: Selected Papers from the 23rd international Radiocarbon Conference, Trondheim, Norway, 17-22 june 2018. Radiocarbon: An International Journal of Cosmogenic Isotope Research, 61(6), 1675-1683. https://doi.org/10.1017/RDC.2019.112

Besenbacher, S., Mailund, T., Vilhjálmsson, B. J. & Schierup, M. H. (2019). Association mapping and disease: Evolutionary perspectives. In M. Anisimova (Ed.), Evolutionary genomics: Statistical and computational methods (2 ed., pp. 533-553). Springer. https://doi.org/10.1007/978-1-4939-9074-0_17

Nielsen, J. B. & Spitters, B. (2019). Smart Contract Interactions in Coq. (0 ed.) ArXiv.

Larsen, K. E., Majgren, B. F., Jeppesen, M., Jørgensen, H. & Tange Olsen, M. (2019). Balaenoptera borealis hemoglobin A (HBA) gene, complete cds. GenBank Access. No. MK622931. Dataset

Larsen, K. E., Majgren, B. F., Jeppesen, M., Jørgensen, H. & Tange Olsen, M. (2019). Balaenoptera borealis hemoglobin B (HBB) gene, complete cds. GenBank Access. No. MK622932. Dataset

Bernhard, C., Roeters, S. J., Bauer, K. N., Weidner, T., Bonn, M., Wurm, F. R. & Gonella, G. (2019). Both Poly(ethylene glycol) and Poly(methyl ethylene phosphate) Guide Oriented Adsorption of Specific Proteins. Langmuir, 35(43), 14092-14097. https://doi.org/10.1021/acs.langmuir.9b02275

Golbek, T. W., Padmanarayana, M., Roeters, S. J., Weidner, T., Johnson, C. P. & Baio, J. E. (2019). Otoferlin C2F Domain-Induced Changes in Membrane Structure Observed by Sum Frequency Generation. Biophysical Journal, 117(10), 1820-1830. https://doi.org/10.1016/j.bpj.2019.09.010

Fonseca-García, C., Zayas, A. E., Montiel, J., Nava, N., Sánchez, F. & Quinto, C. (2019). Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus Rhizirregularis inoculation. BMC Genomics, 20(1), Article 800. https://doi.org/10.1186/s12864-019-6162-7

Christensen, L. F. B., Schafer, N., Wolf-Perez, A., Madsen, D. J. & Otzen, D. E. (2019). Bacterial Amyloids: Biogenesis and Biomaterials. In S. Perrett, A. K. Buell & T. P. J. Knowles (Eds.), Advances in Experimental Medicine and Biology (pp. 113-159). Springer. https://doi.org/10.1007/978-981-13-9791-2_4

Kessler, E., Sheshmani, A. & Yau, S.-T. (2019). Super J-holomorphic Curves: Construction of the Moduli Space. ArXiv. https://arxiv.org/abs/1911.05607

Sigsgaard, E. E., Jensen, M. K. R., Winkelmann, I. E., Møller, P. R., Hansen, M. M. & Thomsen, P. F. (2020). Population‐level inferences from environmental DNA – current status and future perspectives. Evolutionary Applications (Online), 13(2), 245-262. https://doi.org/10.1111/eva.12882

Santl-Temkiv, T., Sikoparija, B., Maki, T., Carotenuto, F., Amato, P., Yao, M., E. Morris, C., Schnell, R., Jaenicke, R., Pöhlker, C., DeMott, P. J., Hill , T. C. J. & Huffman, J. A. (2020). Bioaerosol field measurements: Challenges and perspectives in outdoor studies. Aerosol Science and Technology, 54(5), 520-546. https://doi.org/10.1080/02786826.2019.1676395

Ciftyürek, E., Šmíd, B., Li, Z., Matolín, V. & Schierbaum, K. (2019). Spectroscopic understanding of Sno₂ and Wo₃ metal oxide surfaces with advanced synchrotron based: XPS-UPS and near ambient pressure (NAP) XPS surface sensitive techniques for gas sensor applications under operational conditions. Sensors (Switzerland), 19(21), Article 4737. https://doi.org/10.3390/s19214737

Avetisyan, K., Eckert, W., Findlay, A. J. & Kamyshny, A. (2019). Diurnal variations in sulfur transformations at the chemocline of a stratified freshwater lake. Biogeochemistry, 146(1), 83-100. https://doi.org/10.1007/s10533-019-00601-5

Hjorth, M., Albrecht, S., Talens, G. J. J., Grundahl, F., Justesen, A. B., Otten, G. P. P. L., Antoci, V., Dorval, P., Foxell, E., Fredslund Andersen, M., Murgas, F., Palle, E., Stuik, R., Snellen, I. A. G. & Van Eylen, V. (2019). MASCARA-3b: A hot Jupiter transiting a bright F7 star in an aligned orbit. Astronomy and Astrophysics, 631, Article A76. https://doi.org/10.1051/0004-6361/201936082

Bergemann, M., Gallagher, A. J., Eitner, P., Hansen, C., Eitner, P., Bautista, M., Collet, R., Yakovleva, S. A., Belyaev, A. K., Mayriedl, A., Plez, B., Carlsson, M., Carlsson, M. & Leenaarts, J. (2019). Observational constraints on the origin of the elements: I. 3D NLTE formation of Mn lines in late-type stars. Astronomy and Astrophysics, 631, Article A80. https://doi.org/10.1051/0004-6361/201935811

Wittig, N. K., Palle, J., Østergaard, M., Frølich, S., Birkbak, M. E., Spiers, K. M., Garrevoet, J. & Birkedal, H. (2019). Bone Biomineral Properties Vary across Human Osteonal Bone. ACS Nano, 13(11), 12949-12956. https://doi.org/10.1021/acsnano.9b05535

Khateb, H. (2020). Understanding Staphylococcus aureus virulence factors at the nanoscale; detection, adhesion and quorum sensing. Århus Universitet.

Dyla, M., Basse Hansen, S., Nissen, P. & Kjaergaard, M. (2019). Structural dynamics of P-type ATPase ion pumps. Biochemical Society Transactions, 47(5), 1247-1257. https://doi.org/10.1042/BST20190124

Fehér, B., Zhu, K., Nyström, B., Varga, I. & Pedersen, J. S. (2019). Effect of Temperature and Ionic Strength on Micellar Aggregates of Oppositely Charged Thermoresponsive Block Copolymer Polyelectrolytes. Langmuir, 35(42), 13614-13623. https://doi.org/10.1021/acs.langmuir.9b01896

Khateb, H., Klös, G., Meyer, R. L. & Sutherland, D. S. (2020). Development of a label-free LSPR-Apta sensor for Staphylococcus aureus detection. ACS Applied Bio Materials, 3(5), 3066–3077. https://doi.org/10.1021/acsabm.0c00110

Jendroszek, A., Madsen, J. B., Chana-Muñoz, A., Dupont, D. M., Christensen, A., Panitz, F., Füchtbauer, E.-M., Lovell, S. C. & Jensen, J. K. (2019). Biochemical and structural analyses suggest that plasminogen activators coevolved with their cognate protein substrates and inhibitors. Journal of Biological Chemistry, 294(10), 3794-3805. https://doi.org/10.1074/jbc.RA118.005419

Holt-Danborg, L., Vodopiutz, J., Nonboe, A. W., De Laffolie, J., Skovbjerg, S., Wolters, V. M., Mueller, T., Hetzer, B., Querfurt, A., Zimmer, K.-P., Jensen, J. K., Entenmann, A., Heinz-Erian, P., Vogel, L. K. & Janecke, A. R. (2019). SPINT2 (HAI-2) missense variants identified in congenital sodium diarrhea/tufting enteropathy affect the ability of HAI-2 to inhibit prostasin but not matriptase. Human Molecular Genetics, 28(5), 828-841. https://doi.org/10.1093/hmg/ddy394

Vestergaard, M., Berglund, N. A., Hsu, P. C., Song, C., Koldsø, H., Schiøtt, B. & Sansom, M. S. P. (2019). Structure and Dynamics of Cinnamycin-Lipid Complexes: Mechanisms of Selectivity for Phosphatidylethanolamine Lipids. ACS Omega, 4(20), 18889-18899. https://doi.org/10.1021/acsomega.9b02949

Meldgaard Madsen, L., Fiandaca, G. & Auken, E. (2019). An algorithm for 3D modelling of direct current resistivity and full-response time-domain induced polarization data. Abstract from EAGE 25rd European Meeting of Environmental and Engineering Geophysics, Haag, Netherlands. http://www.earthdoc.org/publication/publicationdetails/?publication=98940

Meldgaard Madsen, L., Fiandaca, G., Cai, H., Engebretsen, K. W. & Auken, E. (2019). 3D modelling of time-domain induced polarization. Abstract from 5th International Workshop on Induced Polarization , Newark, United States.

Grombacher, D. (2019). Modelling surface NMR spin-echo experiments in a heterogeneous B₁ field. Geophysical Journal International, 219(2), 1395-1404. https://doi.org/10.1093/gji/ggz388

Franke, D., Klitzke, P., Barckhausen, U., Berglar, K., Berndt, C., Damm, V., Dannowski, A., Ehrhardt, A., Engels, M., Funck, T., Geissler, W., Schnabel, M., Thorwart, M. & Trinhammer, P. (2019). Polyphase Magmatism During the Formation of the Northern East Greenland Continental Margin. Tectonics, 38(8), 2961-2982. https://doi.org/10.1029/2019TC005552

Rattan, S. (Ed.) (2019). Encyclopedia of Biomedical Gerontology. Academic Press.

Rattan, S. (2019). Wiek i stargenie. Instytut Chemii Bioorganicznej PAN.

Gopi, I. K. & Rattan, S. (2019). Biphasic Dose-Response and Hormetic Effects of Stress Hormone Hydrocortisone on Telomerase-Immortalised Human Bone Marrow Stem Cells in vitro. Dose-Response, 17(4), 1-9. https://doi.org/10.1177/1559325819889819

Koren, K., Gravesen Salinas, N. K., Santella, M., Moßhammer, M., Müller, M. C., Dmitriev, R. I., Borisov, S. M., Kühl, M. & Laursen, B. W. (2020). Evaluation of Ebselen-azadioxatriangulenium as redox-sensitive fluorescent intracellular probe and as indicator within a planar redox optode. Dyes and Pigments, 173, Article 107866. https://doi.org/10.1016/j.dyepig.2019.107866

Lauridsen, H., Gonzales, S., Hedwig, D., Perrin, K. L., Williams, C., Wrege, P. H., Bertelsen, M. F., Pedersen, M. & Butcher, J. T. (2019). Extracting physiological information in experimental biology via Eulerian video magnification. B M C Biology, 17(1), Article 103. https://doi.org/10.1186/s12915-019-0716-7

Lauridsen, H., Desvignes, T., Damsgaard, C., Thomsen, J. S., Stenum, T., Ringgaard, S., Hansen, K., Funder, A. M. D., Andersen, T. L., Boel, L. W. T., Rejnmark, L., Postlethwait, J., Møller, P. R. & Detrich, H. W. (2019). Bone mineral density reduction explains buoyancy adaptations in notothenioids. F A S E B Journal, 33(1). https://www.fasebj.org/doi/abs/10.1096/fasebj.2019.33.1_supplement.lb146

Lauridsen, H., Desvignes, T., Damsgaard, C., Funder, A. M. D., Thomsen, J. S., Postlethwait, J., Møller, P. R. & Detrich, H. W. (2019). PO2 profiles in the retina of the hemoglobin-less icefishes. F A S E B Journal, 33(1), Article lb413. https://www.fasebj.org/doi/abs/10.1096/fasebj.2019.33.1_supplement.lb413?ai=1gvoi&mi=3ricys&af=R

Hogräfer, M. & Schulz, H.-J. (2019). ReVize: A Library for Visualization Toolchaining with Vega-Lite. In Italian Chapter Conference 2019 - Smart Tools and Apps in computer Graphics, STAG 2019 (pp. 129-139). Eurographics Association. https://doi.org/10.2312/stag.20191375

Yang, T., Cao, Y., Friis, H., Liu, K., Wang, Y., Zhou, L., Yuan, G., Xi, K. & Zhang, S. (2020). Diagenesis and reservoir quality of lacustrine deep-water gravity-flow sandstones in the Eocene Shahejie Formation in the Dongying sag, Jiyang depression, eastern China. AAPG Bulletin, 104(5), 1045-1073. https://doi.org/10.1306/1016191619917211

Yang, T., Cao, Y., Liu, K., Tian, J., Friis, H. & Zhou, L. (2020). Formation of zoned ankerite in gravity-flow sandstones in the Linnan Sag, Bohai Bay Basin, eastern China: Evidence of episodic fluid flow revealed from in-situ trace elemental analysis. Marine and Petroleum Geology, 113, Article 104139. https://doi.org/10.1016/j.marpetgeo.2019.104139

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Anne Kirstine Mehlsen