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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Liang, S., Zhang, L. & Jiang, F. (2016). Indirect sulfur reduction via polysulfide contributes to serious odor problem in a sewer receiving nitrate dosage. Water Research, 100, 421-428. https://doi.org/10.1016/j.watres.2016.05.036

Flury, S., Røy, H., Dale, A. W., Fossing, H., Toth, Z., Spiess, V., Jensen, J. B. & Jorgensen, B. B. (2016). Controls on subsurface methane fluxes and shallow gas formation in Baltic Sea sediment (Aarhus Bay, Denmark). Geochimica et Cosmochimica Acta, 188, 297-309. https://doi.org/10.1016/j.gca.2016.05.037

Athanasiadis, G., Jorgensen, F. G., Cheng, J. Y., Kjaergaard, P. C., Schierup, M. H. & Mailund, T. (2016). Spitting for Science: Danish High School Students Commit to a Large-Scale Self-Reported Genetic Study. PLoS One, 11(8), Article e0161822. https://doi.org/10.1371/journal.pone.0161822

Sreeparvathy, P. C., Kanchana, V., Vaitheeswaran, G. & Christensen, N. E. (2016). ZnGeSb₂: a promising thermoelectric material with tunable ultra-high conductivity. Physical Chemistry Chemical Physics, 18(37), 26275-26283. Article 26275. https://doi.org/10.1039/c6cp05446c

Kiilerich, A. H. & Molmer, K. (2016). Bayesian parameter estimation by continuous homodyne detection. Physical Review A, 94(3), Article 032103. https://doi.org/10.1103/PhysRevA.94.032103

Compton, D. L., Bedding, T. R., Murphy, S. J. & Stello, D. (2016). Binary star detectability in Kepler data from phase modulation of different types of oscillations. Monthly Notices of the Royal Astronomical Society, 461(2), 1943-1949. https://doi.org/10.1093/mnras/stw1092

Laursen, K. L., Fynbo, H. O. U., Kirsebom, O. S., Madsboll, K. S. & Riisager, K. (2016). Complete kinematical study of the 3 alpha breakup of the 16.11 MeV state in C-12. The European Physical Journal A: Hadrons and Nuclei, 52(9), Article 271. https://doi.org/10.1140/epja/i2016-16271-2

Foley, R. J., Pan, Y.-C., Brown, P., Filippenko, A. V., Fox, O. D., Hillebrandt, W., Kirshner, R. P., Marion, G. H., Milne, P. A., Parrent, J. T., Pignata, G. & Stritzinger, M. D. (2016). Ultraviolet diversity of Type Ia Supernovae. Monthly Notices of the Royal Astronomical Society, 461(2), 1308-1316. https://doi.org/10.1093/mnras/stw1440

Sandoval, J. H., Bellotti, F. F., Jensen, A. S. & Yamashita, M. T. (2016). Mean-square radii of two-component three-body systems in two spatial dimensions. Physical Review A, 94(2), Article 022514. https://doi.org/10.1103/PhysRevA.94.022514

Øllgaard, B. (2016). New neotropical Lycopodiaceae. Phytotaxa, 277(3), 266-274. https://doi.org/10.11646/phytotaxa.277.3.4

Øllgaard, B. & Windisch, P. G. (2016). Lycopodiaceae in Brazil. Conspectus of the family II. The genera Lycopodiella, Palhinhaea, and Pseudolycopodiella. Rodriguesia, 67(3), 691-719. https://doi.org/10.1590/2175-7860201667313

Christensen, L., Christiansen, L., Shepperson, B. & Stapelfeldt, H. (2016). Deconvoluting nonaxial recoil in Coulomb explosion measurements of molecular axis alignment. Physical Review A, 94(2), Article 023410. https://doi.org/10.1103/PhysRevA.94.023410

Øllgaard, B. (2016). Additions, deletions and changes to the Ecuadorian Lycopodiaceae. Phytotaxa, 246(2), 93-106. https://doi.org/10.11646/phytotaxa.246.2.1

Christodoulou, M. S., Zarate, M., Ricci, F., Damia, G., Pieraccini, S., Dapiaggi, F., Sironi, M., Lo Presti, L., García-Argáez, A. N., Dalla Via, L. & Passarella, D. (2016). 4-(1,2-diarylbut-1-en-1-yl)isobutyranilide derivatives as inhibitors of topoisomerase II. European Journal of Medicinal Chemistry, 118, 79-89. https://doi.org/10.1016/j.ejmech.2016.03.090

Brown, D. R., Heijl, R., Borup, K., Iversen, B. B., Palmqvist, A. & Snyder, G. J. (2016). Relating phase transition heat capacity to thermal conductivity and effusivity in Cu₂Se. Physica Status Solidi. Rapid Research Letters, 10(8), 618-621. https://doi.org/10.1002/pssr.201600160

Straasø, L. A., Shankar, R., Tan, K. O., Hellwagner, J., Meier, B. H., Hansen, M. R., Nielsen, N. C., Vosegaard, T., Ernst, M. & Nielsen, A. B. (2016). Improved transfer efficiencies in radio-frequency-driven recoupling solid-state NMR by adiabatic sweep through the dipolar recoupling condition. The Journal of Chemical Physics, 145(3), Article 034201. https://doi.org/10.1063/1.4958318

El Hage, K., Bereau, T., Jakobsen, S. & Meuwly, M. (2016). Impact of quadrupolar electrostatics on atoms adjacent to the sigma-hole in condensed-phase simulations. Journal of Chemical Theory and Computation, 12(7), 3008-3019. https://doi.org/10.1021/acs.jctc.6b00202

Ma, D., Li Manni, G., Olsen, J. & Gagliardi, L. (2016). Second-order perturbation theory for generalized active space self-consistent-field wave functions. Journal of Chemical Theory and Computation, 12(7), 3208-3213. https://doi.org/10.1021/acs.jctc.6b00382

Sørensen, L. K. & Olsen, J. (2017). Collecting all intermediates with an optimal scaling for the generalised-active-space coupled-cluster method with application to SbH. Molecular Physics, 115(1-2), 90-108. https://doi.org/10.1080/00268976.2016.1195926

Ringsted, T., Dupont, S., Ramsay, J., Jespersen, B. M., Sørensen, K. M., Keiding, S. R. & Engelsen, S. B. (2016). Near-Infrared Spectroscopy Using a Supercontinuum Laser: Application to Long Wavelength Transmission Spectra of Barley Endosperm and Oil. Applied Spectroscopy, 70(7), 1176-1185. https://doi.org/10.1177/0003702816652361

Heuckendorff, M., Poulsen, L. T. & Jensen, H. H. (2016). Remote Electronic Effects by Ether Protecting Groups Fine-Tune Glycosyl Donor Reactivity. The Journal of Organic Chemistry, 81(12), 4988-5006. https://doi.org/10.1021/acs.joc.6b00528

Fiser, B., Mucsi, Z., Gómez-Bengoa, E., Viskolcz, B., Jensen, S. K. & Csizmadia, I. G. (2016). Reply to comment on "Radicalicity: A scale to compare reactivities of radicals". Chemical Physics Letters, 654, 141. https://doi.org/10.1016/j.cplett.2016.04.035

Glombitza, C., Adhikari, R. R., Riedinger, N., Gilhooly III, W. P., Hinrichs, K.-U. & Inagaki, F. (2016). Microbial Sulfate Reduction Potential in Coal-Bearing Sediments Down to ~2.5 km below the Seafloor off Shimokita Peninsula, Japan. Frontiers in Microbiology, 7(OCT), Article 1576. https://doi.org/10.3389/fmicb.2016.01576

Csontos, J., Nagy, B., Gyevi-Nagy, L., Kállay, M. & Tasi, G. (2016). Enthalpy Differences of the n-Pentane Conformers. Journal of Chemical Theory and Computation, 12(6), 2679-2688. https://doi.org/10.1021/acs.jctc.6b00280

Jensen, G. V., Lund, R., Narayanan, T. & Pedersen, J. S. (2016). Transformation from Globular to Cylindrical Mixed Micelles through Molecular Exchange that Induces Micelle Fusion. The Journal of Physical Chemistry Letters, 7(11), 2039-2043. https://doi.org/10.1021/acs.jpclett.6b00767

Halskov, K. S., Næsborg, L., Tur Espinosa, F. & Jørgensen, K. A. (2016). Asymmetric [3 + 2] Cycloaddition of Vinylcyclopropanes and α,β-Unsaturated Aldehydes by Synergistic Palladium and Organocatalysis. Organic Letters, 18(9), 2220-2223. https://doi.org/10.1021/acs.orglett.6b00852

Skeby, K. K., Andersen, O. J., Pogorelov, T. V., Tajkhorshid, E. & Schiøtt, B. (2016). Conformational Dynamics of the Human Islet Amyloid Polypeptide in a Membrane Environment: Toward the Aggregation Prone Form. Biochemistry, 55(13), 2031-2042. https://doi.org/10.1021/acs.biochem.5b00507

Friis, S. D., Lindhardt, A. T. & Skrydstrup, T. (2016). The Development and Application of Two-Chamber Reactors and Carbon Monoxide Precursors for Safe Carbonylation Reactions. Accounts of Chemical Research, 49(4), 594-605. https://doi.org/10.1021/acs.accounts.5b00471

Jakobsen, S. & Jensen, F. (2016). Searching the Force Field Electrostatic Multipole Parameter Space. Journal of Chemical Theory and Computation, 12(4), 1824-1832. https://doi.org/10.1021/acs.jctc.5b01187

Jensen, A. C. S., Brif, A., Pokroy, B., Hinge, M. & Birkedal, H. (2016). Morphology-preserving transformation of minerals mediated by a temperature-responsive polymer membrane: Calcite to hydroxyapatite. CrystEngComm, 18(13), 2289-2293. https://doi.org/10.1039/c5ce02245b

Kolsbjerg, E. L., Groves, M. N. & Hammer, B. (2016). An automated nudged elastic band method. Journal of Chemical Physics, 145(9), Article 094107. https://doi.org/10.1063/1.4961868

Salami Dehkharghani, A. (2015). Strongly Interacting One-Dimensional Bose Systems and Bose Polarons. Poster session presented at WE-Heraeus-Seminar on 'Cold Atoms meet Quantum Field Theory, Bad Honnef, Germany.

Salami Dehkharghani, A. (2016). Impenetrable Two-Component Mass-Imbalanced Particles in One-Dimensional Harmonic Traps. Poster session presented at EFB23, Aarhus, Denmark.

Funch, P., Wang, T., Pertoldi, C. & Middelbo, A. B. (2016). Low oxygen levels slow embryonic development of Limulus polyphemus. Biological Bulletin, 231(2), 113-119. https://doi.org/10.1086/690091

Madsen, M. M., Jones, N. C., Nielsen, S. B. & Hoffmann, S. V. (2016). On the wavelength dependence of UV induced thymine photolesions: A Synchrotron Radiation Circular Dichroism study. Physical Chemistry Chemical Physics, 18, 30436-30443. https://doi.org/10.1039/C6CP05980E

Conti, D., Madsen, T. B. & Salamon, S. (2016). Quaternionic geometry in dimension eight. arxiv.org. https://arxiv.org/abs/1610.04833

Vogt, L. M., Talens, S., Scavenius, C., Enghild, J. J., Saxne, T. & Blom, A. M. (2016). Activation of complement by pigment epithelium derived protein in synovial fluid of rheumatoid arthritis patients. Immunobiology, 221(10), 1157-1157. https://doi.org/10.1016/j.imbio.2016.06.075

Teresa Muñoz-Calvo, M., Barrios, V., Pozo, J., Chowen, J. A., Martos-Moreno, G. Á., Hawkins, F., Dauber, A., Domené, H. M., Yakar, S., Rosenfeld, R. G., Pérez-Jurado, L. A., Oxvig, C., Frystyk, J. & Argente, J. (2016). Treatment with recombinant human insulin-like growth factor-1 improves growth in patients with PAPP-A2 deficiency. The Journal of Clinical Endocrinology & Metabolism, 101(11), 3879-3883. https://doi.org/10.1210/jc.2016-2751

Monget, P. & Oxvig, C. (2016). PAPP-A and the IGF system / La PAPP-A et le système des IGFs. Annales d'Endocrinologie, 77(2), 90-96. https://doi.org/10.1016/j.ando.2016.04.015

Mamsen, L. S., Munthe-Fog, L., Petersen, T. S., Jeppesen, J. V., Møllgård, K., Grøndahl, M. L., Larsen, A., Ernst, E., Oxvig, C., Kumar, A., Kalra, B. & Andersen, C. Y. (2016). Reply: Methodological considerations in measuring different AMH splice forms using ELISA: validity of proAMH ELISA. Molecular Human Reproduction, 22(5), 374-375. Article gaw022. https://doi.org/10.1093/molehr/gaw022

Takabatake, Y., Oxvig, C., Nagi, C., Adelson, K., Jaffer, S., Schmidt, H., Keely, P. J., Eliceiri, K. W., Mandeli, J. & Germain, D. (2016). Lactation opposes pappalysin-1-driven pregnancy-associated breast cancer. EMBO Molecular Medicine, 8(4), 388-406. https://doi.org/10.15252/emmm.201606273

Gong, L., Proulle, V., Fang, C., Hong, Z., Lin, Z., Liu, M., Xue, G., Yuan, C., Lin, L., Furie, B., Flaumenhaft, R., Andreasen, P., Furie, B. & Huang, M. (2016). A specific plasminogen activator inhibitor-1 antagonist derived from inactivated urokinase. Journal of Cellular and Molecular Medicine (Online), 20(10), 1851-1860. https://doi.org/10.1111/jcmm.12875

De Lorenzi, V., Sarra Ferraris, G. M., Madsen, J. B., Lupia, M., Andreasen, P. A. & Sidenius, N. (2016). Urokinase links plasminogen activation and cell adhesion by cleavage of the RGD motif in vitronectin. EMBO Reports, 17(7), 982-998. https://doi.org/10.15252/embr.201541681

Gavezzotti, A., Colombo, V. & Lo Presti, L. (2016). Facts and Factors in the Formation and Stability of Binary Crystals. Crystal Growth & Design, 16(10), 6095-6104. https://doi.org/10.1021/acs.cgd.6b01146

Botkjaer, K. A., Kwok, H. F., Terp, M. G., Karatt-Vellatt, A., Santamaria, S., McCafferty, J., Andreasen, P. A., Itoh, Y., Ditzel, H. J. & Murphy, G. (2016). Development of a specific affinity-matured exosite inhibitor to MT1-MMP that efficiently inhibits tumor cell invasion in vitro and metastasis in vivo. OncoTarget, 7(13), 16773-16792. https://doi.org/10.18632/oncotarget.7780

Gong, L., Liu, M., Zeng, T., Shi, X., Yuan, C., Andreasen, P. A. & Huang, M. (2016). Structural basis of specific inhibition of tissue-type plasminogen activator by plasminogen activators inhibitor-1. Data in Brief, 6, 550-555. https://doi.org/10.1016/j.dib.2015.12.050

Thomsen, M. K., Nandakumar, R., Stadler, D., Malo, A., Valls, R. M., Wang, F., Reinert, L. S., Dagnaes-Hansen, F., Hollensen, A. K., Mikkelsen, J. G., Protzer, U. & Paludan, S. R. (2016). Lack of immunological DNA sensing in hepatocytes facilitates hepatitis B virus infection. Hepatology, 64(3), 746-759. https://doi.org/10.1002/hep.28685

Rattan, S. I. S. & Toussaint, O. (Eds.) (1996). Molecular Gerontology: Research Status and Strategies. In S. I. Rattan & O. Toussaint (Eds.), Molecular Gerontology: Research Status and Strategies Springer. https://doi.org/10.1007/978-1-4615-5889-7

Willerslev, R. & Anonymous, N. V. (2016). Cosmology, Politics, and Suicide in Siberia: An interview with Rane Willerslev. The Georgetown Journal of International Affairs, 17(2), 66-71.

Willerslev, R. & Nielsen, J. L. (2016). Regenerating Life in the Face of Predation: A Study of Mortuary Ritual as Sacrifice among the Siberian Chukchi. Sibirica: Interdisciplinary Journal of Siberian Studies, 15(2), 1-39. https://doi.org/10.3167/sib.2016.150201

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