Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Kaul, M., Wong, R. C.-W., Yang, B. & Jensen, C. S. (2013). Finding Shortest Paths on Terrains by Killing Two Birds with One Stone. Proceedings of the VLDB Endowment, 7(1), 73-84. http://www.vldb.org/pvldb/vol7/p73-kaul.pdf

Schmidt, V. K., Sørensen, B. S., Sørensen, H. V., Alsner, J. & Westergaard, O. (1994). Intramolecular and intermolecular DNA ligation mediated by topoisomerase II. Journal of Molecular Biology, 241(1), 18-25. https://doi.org/10.1006/jmbi.1994.1469

Kjeldsen, E., Svejstrup, J. Q., Gromova, I. I., Alsner, J. & Westergaard, O. (1992). Camptothecin inhibits both the cleavage and religation reactions of eukaryotic DNA topoisomerase I. Journal of Molecular Biology, 228(4), 1025-1030. https://doi.org/10.1016/0022-2836(92)90310-G

Sørensen, B. S., Sinding, J., Andersen, A. H., Alsner, J., Jensen, P. B. & Westergaard, O. (1992). Mode of action of topoisomerase II-targeting agents at a specific DNA sequence. Uncoupling the DNA binding, cleavage and religation events. Journal of Molecular Biology, 228(3), 778-786. https://doi.org/10.1016/0022-2836(92)90863-F

Bendixen, C., Thomsen, B., Alsner, J. & Westergaard, O. (1990). Camptothecin-stabilized topoisomerase I-DNA adducts cause premature termination of transcription. Biochemistry, 29(23), 5613-5619. http://www.ncbi.nlm.nih.gov/pubmed/?term=Camptothecin-stabilized+topoisomerase+I-DNA+adducts+cause+premature+termination+of+transcription

Damsgaard, C., Storz, J. F., Hoffmann, F. G. & Fago, A. (2013). Hemoglobin isoform differentiation and allosteric regulation of oxygen binding in the turtle, Trachemys scripta. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology, 305(8), R961-7. https://doi.org/10.1152/ajpregu.00284.2013

Bason, M. G. (2013). Towards single atom manipulation in superlattices.

Bruun, G. (2013). Dipolar fermions in 1D and 2D geometries.

Andersen, H. H. (2013). Cavity Optomechanics of Single and Ensembles of Ions.

Gajdacz, M. (2013). Non-destructive Faraday imaging of dynamically controlled ultracold atoms.

Jafarzadeh, M., Harami, R. M., Friis, H., Amini, A., Mahboubi, A. & Lenaz, D. (2014). Provenance of the Oligocene-Miocene Zivah Formation, NW Iran, assessed using heavy mineral assemblage and detrital clinopyroxene and detrital apatite analyses. Journal of African Earth Sciences, 89, 56-71. https://doi.org/10.1016/j.jafrearsci.2013.10.005

Dancer, A., Kirwan, F. & Swann, A. F. (2013). Implosion for hyperkähler manifolds. Compositio Mathematica, 149(09), 1592-1630. https://doi.org/10.1112/S0010437X13007203

Jensen, P. W., Falconi, M., Kristoffersen, E. L., Simonsen, A. T., Cifuentes, J. B., Marcussen, L., Hougaard, R. F., Vagner, J., Harmsen, C., Jensen, S. J., Ho, Y.-P., Withers, M. A., Lupski, J. R., Koch, J. E., Desideri, A., Knudsen, B. R. & Stougaard, M. (2013). Real-time detection of TDP1 activity using a fluorophore-quencher coupled DNA-biosensor. Biosensors and Bioelectronics, Volume 48, 230–237. https://doi.org/10.1016/j.bios.2013.04.019

Simmons , R. J. & Zerny, I. (2013). A logical correspondence between natural semantics and abstract machines. In R. Peña & T. Schrijvers (Eds.), Proceedings of the 15th Symposium on Principles and Practice of Declarative Programming, PPDP '13 (pp. 109-119 ). Association for Computing Machinery. https://doi.org/10.1145/2505879.2505899

Zerny, I. & Danvy, O. (2013). A synthetic operational account of call-by-need evaluation. In R. Peña & T. Schrijvers (Eds.), Proceedings of the 15th Symposium on Principles and Practice of Declarative Programming, PPDP '13 (pp. 97-108). Association for Computing Machinery. https://doi.org/10.1145/2505879.2505898

Danvy, O., Thiemann, P. & Zerny, I. (2013). Circularity and Lambda Abstraction. In Proceedings, The 25th symposium on Implementation and Application of Functional Languages. ScienceGate. http://www.sciencegate.ch/home?p_p_id=new_search_portlet_WAR_PSW_3_SciencegatePortlets&p_p_lifecycle=1&p_p_state=normal&p_p_mode=view&p_p_col_id=column-3&p_p_col_pos=1&p_p_col_count=4&_new_search_portlet_WAR_PSW_3_SciencegatePortlets_action=search&_new_search_portlet_WAR_PSW_3_SciencegatePortlets_field=dc.source&_new_search_portlet_WAR_PSW_3_SciencegatePortlets_mode=mode.exact&_new_search_portlet_WAR_PSW_3_SciencegatePortlets_sort=&_new_search_portlet_WAR_PSW_3_SciencegatePortlets_query=The+25th+symposium+on+Implementation+and+Application+of+Functional+Languages.

Andersen, S. S., Hvid, M., Pedersen, F. S. & Deleuran, B. (2013). Proximity ligation assay combined with flow cytometry is a powerful tool for the detection of cytokine receptor dimerization. Cytokine, 64(1), 54-57. https://doi.org/10.1016/j.cyto.2013.04.026

Dupont-Dupuis, F., Fawzi, O. & Wehner, S. (2013). Achieving the Limits of the Noisy-Storage Model Using Entanglement Sampling. In R. Canetti & J. A. Garay (Eds.), Advances in Cryptology – CRYPTO 2013: 33rd Annual Conference. Proceedings, Part II (pp. 326-343 ). Springer VS. https://doi.org/10.1007/978-3-642-40084-1_19

Winther, K. S., Brodersen, D. E., Brown, A. K. & Gerdes, K. (2013). VapC20 of Mycobacterium tuberculosis Cleaves the Sarcin Ricin Loop of 23S rRNA. Nature Communications, 4, Article 2796. https://doi.org/10.1038/ncomms3796

Sørensen, J. L., Knudsen, M., Hansen, F. T., Olesen, C., Romans Fuertes, P., Lee, T. V., Søndergaard, T. E., Pedersen, C. N. S., Brodersen, D. E. & Giese, H. (2014). Fungal NRPS-dependent siderophores: From function to prediction. In J.-F. Martin, C. Garcia-Estrada & S. Zeilinger (Eds.), Biosynthesis and Molecular Genetics of Fungal Secondary Metabolites (pp. 317-339). Springer. https://doi.org/10.1007/978-1-4939-1191-2_15

Bach, C. C., Bech, B. H., Nøhr, E. A., Olsen, J., Bossi, R., Bonefeld-Jørgensen, E. C., Uldbjerg, N. & Henriksen, T. B. (2013). Serum levels of perfluorinated chemicals in pregnant women and fetal growth: Preliminary results.

Bach, C. C., Bech, B. H., Nøhr, E. A., Olsen, J., Uldbjerg, N., Bonefeld-Jørgensen, E. C., Bossi, R. & Henriksen, T. B. (2013). Perfluorinated chemicals and female subfecundity: Preliminary results.

Roodbeen, R., Paaske, B., Jiang, L., Jensen, J. K., Christensen, A., Nielsen, J. T., Huang, M., Mulder, F. A. A., Nielsen, N. C., Andreasen, P. & Jensen, K. J. (2013). Bicyclic Peptide Inhibitor of Urokinase-Type Plasminogen Activator: Mode of Action. ChemBioChem, 14(16), 2179–2188. https://doi.org/10.1002/cbic.201300335

Madsen, P. P. T., Lammers, M., Wisniewska, D. M. & Beedholm, K. (2013). Nasal sound production in echolocating delphinids (Tursiops truncatus and Pseudorca crassidens) in dynamic, but unilateral: clicking on the right side and whistling on the left side. Journal of Experimental Biology, 216(1), 4091-4102. https://doi.org/10.1242/jeb.091306

Underhaug, J., Koldsø, H., Runager, K., Nielsen, J. T., Sørensen, C. S., Kristensen, T., Otzen, D., Karring, H., Malmendal, A., Schiøtt, B., Enghild, J. J. & Nielsen, N. C. (2013). Mutation in transforming growth factor beta induced protein associated with granular corneal dystrophy type 1 reduces the proteolytic susceptibility through local structural stabilization. BBA General Subjects, 1834(12), 2812–2822. https://doi.org/10.1016/j.bbapap.2013.10.008

Jensen, G. H., Madsen, J., Wisz, M. & Tombre, I. (2013). Hunting for the optimal hunt. Abstract from International Union of Game Biologist, Brussels, Belgium. http://www.iugb2013.org/docs/O.TL.15_Jensen.pdf

Arnò, B., D'Annessa, I., Tesauro, C., Zuccaro, L., Ottaviani, A., Knudsen, B. R., Fiorani, P. & Desideri, A. (2013). Replacement of the human topoisomerase linker domain with the plasmodial counterpart renders the enzyme camptothecin resistant. PLoS One, 8(7), Article e68404. https://doi.org/10.1371/journal.pone.0068404

Mikkelsen, R. E. & Uggerhøj, U. I. (2013, Oct 23). En gigantisk isterning (reprint): lysglimt fra Antarktis' dyb fortæller om kosmos. http://videnskab.dk/miljo-naturvidenskab/lysglimt-fra-antarktis-dyb-fortaeller-om-kosmos

Rasmusson, A., Sørensen, T. S. & Ziegler, G. (2013). Connected Components Labeling on the GPU with Generalization to Voronoi Diagrams and Signed Distance Fields. In G. Bebis et al. (Ed.), Advances in Visual Computing: 9th International Symposium, ISVC 2013, Rethymnon, Crete, Greece, July 29-31, 2013. Proceedings, Part I (pp. 206-215). Springer VS. https://doi.org/10.1007/978-3-642-41914-0_21

Ketzel, M., Massling, A., Løfstrøm, P., Winther, M., Kousgaard, U., Christensen, J., Geels, C., Nøjgaard, J. K. & Ellermann, T. (2013). Modelling and measurements of NO_x, PM and ultrafine particles at Copenhagen airport. Abstract from 11th Workshop on - Urban Air Quality: Impacts of Traffic, Alternative Fuels, and Solvents, Copenhagen, Denmark.

Burgert, T., Schmidt, V., Caglayan, S., Lin, F., Füchtbauer, A., Füchtbauer, E.-M., Nykjaer, A., Carlo, A.-S. & Willnow, T. E. (2013). SORLA-Dependent and -Independent Functions for PACS1 in Control of Amyloidogenic Processes. Molecular and Cellular Biology, 33(21), 4308-4320. https://doi.org/10.1128/MCB.00628-13

Vallese, D., Negroni, E., Duguez, S., Ferry, A., Trollet, C., Aamiri, A., Vosshenrich, C. A., Füchtbauer, E.-M., Di Santo, J. P., Vitiello, L., Butler-Browne, G. & Mouly, V. (2013). The Rag2^-I/2rb^-Dmd^- Mouse: a Novel Dystrophic and Immunodeficient Model to Assess Innovating Therapeutic Strategies for Muscular Dystrophies. Molecular Therapy, 21(10), 1950-1957. https://doi.org/10.1038/mt.2013.186

Laursen, K. L., Kirsebom, O. S., Fynbo, H. O. U., Jokinen, A., Madurga, M., Riisager, K., Saastamoinen, A., Tengblad, O. & Aystö, J. (2013). High-statistics measurement of the β-delayed α spectrum of 20Na. The European Physical Journal A: Hadrons and Nuclei, 49(6), 1-13. https://doi.org/10.1140/epja/i2013-13079-6

Kirsebom, O. S. (2013). Decay of 12C* into Three α Particles. Few-Body Systems, 54(5-6), 755-759. https://doi.org/10.1007/s00601-012-0441-z

Kirsebom, O. S. (2013). 12C and the triple-α reaction rate. Journal of Physics: Conference Series, 436, 012072. https://doi.org/10.1088/1742-6596/436/1/012072

Jenkins, D. & Kirsebom, O. S. (2013). The secret of life. Physics World, 23-26. http://physicsworld.com/cws/article/print/2013/feb/07/the-secret-of-life

Kirsebom, O. S., Fynbo, H., Jokinen, A., Madurga, M., Riisager, K., Saastamoinen, A., Tengblad, O. & Äystö, J. (2011). New β-delayed proton lines from 23Al. The European Physical Journal A: Hadrons and Nuclei, 47, 1-8. https://doi.org/10.1140/epja/i2011-11130-4

Fynbo, H. O. U., Álvarez-Rodriguez, R., Jensen, A. S., Kirsebom, O. S., Fedorov, D. V. & Garrido, E. (2009). Three-body decays and R-matrix analyses. Physical Review C (Nuclear Physics), 79(5), 054009. https://doi.org/10.1103/PhysRevC.79.054009

Hyldegaard, S., Alcorta, M., Bastin, B., Borge, M. J. G., Boutami, R., Brandenburg, S., Büscher, J., Dendooven, P., Diget, C. A., Van Duppen, P., Eronen, T., Fox, S. P., Fraile, L. M., Fulton, B. R., Fynbo, H. O. U., Huikari, J., Huyse, M., Jeppesen, H. B., Jokinen, A. S. ... Äystö, J. (2010). R-matrix analysis of the β decays of 12N and 12B. Physical Review C (Nuclear Physics), 81(2), 024303. https://doi.org/10.1103/PhysRevC.81.024303