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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Thomsen, J. (2006). OSGi-based Gateway Replication. In N. Guimarães, P. Isaías & A. Goikoetxea (Eds.), Proceedings of the IADIS Applied Computing Conference 2006 (pp. 123-129). International Association for Development, IADIS.
Gerhardy, P. (2005). The Role of Quantifier Alternations in Cut Elimination. Notre Dame Journal of Formal Logic, 46(2), 165-171.
Hernest, M.-D. & Kohlenbach, U. (2005). A complexity analysis of functional interpretations. Theoretical Computer Science, 338(1-3), 200-246.
Kohlenbach, U. (2005). Higher Order Reverse Mathematics. In S. G. Simpson (Ed.), Reverse Mathematics 2001 (pp. 281-295). A K Peters.
Kohlenbach, U. (2005). Some Logical Metatheorems with Applications in Functional Analysis. Transactions of the American Mathematical Society, 357(1), 89-128.
Bennedsen, J. & Caspersen, M. E. (2005). Revealing the programming process. In W. Dann, T. L. Naps, P. T. Tymann & D. Baldwin (Eds.), Proceedings of the 36th SIGCSE Technical Symposium on Computer Science Education, SIGCSE 2005 (St. Louis, Missouri, USA, February 23-27, 2005) (pp. 186-190). Association for Computing Machinery. https://doi.org/10.1145/1047124.1047413
Danvy, O. (2005). From Reduction-based to Reduction-free Normalization. Electronic Notes in Theoretical Computer Science, 124(2), 79-100.
Allender, E., Bürgisser, P., Kjeldgaard-Pedersen, J. & Miltersen, P. B. (2005). On the Complexity of Numerical Analysis. Electronic Colloquium on Computational Complexity, (TR05-037), 1-12.
Zhao, Y., Nielsen, J. B., Deng, R. H. & Feng, D. (2005). Generic yet Practical ZK Arguments from any Public-Coin HVZK. Electronic Colloquium on Computational Complexity, (TR05-162), 1-16.
Cattani, G. L. & Winskel, G. (2005). Profunctors, open maps and bisimulation. Mathematical Structures in Computer Science, 15(3), 553-614.
Lambov, B. Z. (2005). RealLib: an Efficient Implementation of Exact Real Arithmetic. In T. Grubba, P. Hertling, H. Tsuiki & K. Weihrauch (Eds.), econd International Conference on Computability and Complexity in Analysis, CCA 2005 Proceedings (Kyoto, Japan, August 25-29, 2005) (pp. 169-175)
Lambov, B. Z. (2005). Complexity and Intensionality in a Type-1 Framework for Computable Analysis. In C.-H. L. Ong (Ed.), Computer Science Logic, 19th International Workshop, CSL 2005 Proceedings, 14th Annual Conference of the EACSL (Oxford, UK, August 22-25, 2005) (pp. 442-461). Springer LNCS.
Lambov, B. Z. (2005). Rates of Convergence of Recursively Defined Sequences. Electronic Notes in Computer Science, 120, 125-133.
Allan, C., Avgustinov, P., Christensen, A. S., Hendren, L. J., Kuzins, S., Lhoták, J., Lhoták, O., de Moor, O., Sereni, D., Sittampalam, G. & Tibble, J. (2005). abc: The AspectBench Compiler for AspectJ. In R. Glück & M. R. Lowry (Eds.), Generative Programming and Component Engineering, 4th International Conference, GPCE 2005 Proceedings (Tallinn, Estonia, September 29 - October 1, 2005) (pp. 10-16)
Allan, C., Avgustinov, P., Christensen, A. S., Dufour, B., Goard, C., Hendren, L. J., Kuzins, S., Lhoták, J., Lhoták, O., de Moor, O., Sereni, D., Sittampalam, G., Tibble, J. & Verbrugge, C. (2005). abc the aspectBench compiler for aspectJ a workbench for aspect-oriented programming language and compilers research. In R. Johnson & R. P. Gabriel (Eds.), Companion to the 20th Annual ACM SIGPLAN Conference on Object-Oriented Programming, Systems, Languages, and Applications, OOPSLA 2005 (San Diego, CA, USA, October 16-20, 2005) (pp. 88-89). Association for Computing Machinery.
Avgustinov, P., Christensen, A. S., Hendren, L. J., Kuzins, S., Lhoták, J., Lhoták, O., de Moor, O., Sereni, D., Sittampalam, G. & Tibble, J. (2006). abc: An Extensible AspectJ Compiler. In A. Rashid & M. Aksit (Eds.), Transactions on Aspect-Oriented Software Development I (pp. 87-98). Springer LNCS. https://doi.org/10.1007/11687061_9
Gerhardy, P. (2006). A Quantitative Version of Kirk's Fixed Point Theorem for Asymptotic Contractions. Journal of Mathematical Analysis and Applications, 316(1), 339-345.
Krukow, K. K., Nielsen, M. & Sassone, V. (2005). A Framework for Concrete Reputation-Systems. BRICS Report Series, (BRICS RS-05-23), 1-48.
Christensen, H. B. (2005). Implications of perspective in teaching objects first and object design. In 10th annual SIGCSE conference on Innovation and technology in computer science education, ITiCSE '05 Proceedings (Caparica, Portugal, June 27-29, 2005) (pp. 94-98). Association for Computing Machinery. https://doi.org/10.1145/1067445.1067474
Christensen, H. B. (2005). TS-05: 150 lines of java with high architectural complexity. In 10th annual SIGCSE conference on Innovation and technology in computer science education, ITiCSE '05 Proceedings (Caparica, Portugal, June 27-29, 2005) (pp. 396-396). Association for Computing Machinery. https://doi.org/10.1145/1067445.1067599
Bergin, J., Wallingford, E., Caspersen, M. E., Goldweber, M. & Kolling, M. (Eds.) (2005). Teaching polymorphism early. In 10th annual SIGCSE conference on Innovation and technology in computer science education, ITiCSE '05 Proceedings (Caparica, Portugal, June 27-29, 2005) (pp. 342-343). Association for Computing Machinery. https://doi.org/10.1145/1067445.1067541
Bennedsen, J. & Caspersen, M. E. (2005). An investigation of potential success factors for an introductory model-driven programming course. In The 2005 international workshop on Computing education research, ICER '05 Proceedings (Seattle, WA, USA, October 1-2, 2005) (pp. 155-163). Association for Computing Machinery. https://doi.org/10.1145/1089786.1089801
Hansen, L. K., Pedersen, P. D. & Eriksson, E. (2005). Rethinking information handling: designing for information offload. In O. W. Bertelsen, N. O. Bouvin, P. G. Krogh & M. Kyng (Eds.), 4th Decennial Conference on Critical Computing: Between sense and sensibility, CC 2005 Proceedings (Aarhus, Denmark August 20-24, 2005) (pp. 161-164). Association for Computing Machinery. https://doi.org/10.1145/1094562.1094589
Bertelsen, O. W. & Zander, P.-O. (2005). Obstacles to Design in Volunteer Based Organisations. In Proceedings of the 5th Danish Human-Computer Interaction Research Symposium (pp. 93-98). Copenhagen Business School.
Bertelsen, O. W., Bødker, S., McEwan, T., Procter, R. & Svanæs, D. (2006). HCI Knowledge - Fit for Transfer, Share or Co-Construction. In The 19th British HCI Group Annual Conference, Napier University. (pp. 341-343)
Ciolfi, L., Cooke, M., Bertelsen, O. W. & Bannon, L. J. (2005). Understanding and Designing for Aesthetic Experience. In L. MacKinnon, O. Bertelsen & N. Bryan-Kinns (Eds.), The 19th British HCI Group Annual Conference (pp. 289-291). The British Computer Society.
Bertelsen, O. W., Marti, P. & Shapiro, D. (2006). Workshop on Ambient Computing in a Critical, Quality of Life Perspective Aarhus, Denmark, 21 August 2005 - as part of the Fourth Aarhus Conference. In The 4th decennial conference on Critical computing: between sense and sensibility 2005, Aarhus, Denmark
Nielsen, C. K., Andersen, T. V., Riis, E., Petersson, A. & Broeng, J. (2005). Investigations of the coupling between the core mode and cladding modes in a double clad Yb-doped photonic crystal fiber. In Proceedings of the 2004 Photonics West Conference SPIE - International Society for Optical Engineering.
Olshansky, S. J. & Rattan, S. (2005). What determines longevity: metabolic rate or stability? Discovery Medicine, 5, 359-362.
Olshansky, S. J. & Rattan, S. (2005). At the heart of aging: is it metabolic rate or stability? Biogerontology, 6, 291-295.
Høyer, B. & Gulamhusein, A. (2005). Udvaskning og immobilisering af arsen i jord - laboratoriestudie. In ATV Vintermøde om jord- og grundvandsforurening (pp. 467-478). ATV.

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Scally, A., Dutheil, J. Y., Hillier, L. W., Jordan, G. E., Goodhead, I., Herrero, J., Hobolth, A., Lappalainen, T., Mailund, T., Marques-Bonet, T., McCarthy, S., Montgomery, S. H., Schwalie, P. C., Tang, Y. A., Ward, M. C., Xue, Y., Yngvadottir, B., Alkan, C., Andersen, L. N. ... Durbin, R. (2012). Insights into hominid evolution from the gorilla genome sequence. Nature, 483(7388), 169-75. https://doi.org/10.1038/nature10842
Wasmund, K., Algora, C., Cooper, M., Schreiber, L., Lloyd, K., Petersen, D. G., Reinhardt, R., Jørgensen, B. B., Schramm, A. & Adrian, L. (2012). Insights into the ecological distributions and genomes of the enigmatic and widely distributed marine subsurface "Dehalococcoidetes" (phylum Chloroflexi). Abstract from 14th International Symposium on Microbial Ecology, Copenhagen, Denmark.
Wangpraseurt, D., Weber, M., Røy, H., Polerecky, L., DeBeer, D., Suharsono & Nugues, M. (2012). In Situ Oxygen Dynamics in Coral-Algal Interactions. PLoS One, 7/2(e31192), 1-8. https://doi.org/10.1371
Fago, A., B. Jensen, F., Tota, B., Feelisch, M., R. Olsen, K., Helbo, S., Lefevre, S., Mancardi, D., Palumbo, A., K. Sandvik, G. & Skovgaard, N. (2012). Integrating nitric oxide, nitrite and hydrogen sulfide signaling in the physiological adaptions to hypoxia: A comparative approach. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 162(1), 1-6. https://doi.org/10.1016/j.cbpa.2012.01.011
Kissling, W. D., Eiserhardt, W. L., Baker, W. J., Borchsenius, F., Couvreur, T. L. P., Balslev, H. & Svenning, J.-C. (2012). Integrating paleo-reconstructions, phylogenies and species distribution data to elucidate deep-time imprints on species assemblages worldwide. Abstract from 42nd annual meeting "From Basic Ecology to the Challenges of Modern Society", Lüneburg, Germany.
Andrén, T., Jørgensen, B. B., Cotterill, C. & Morgan, S. (2012). IODP Expedition 347: Paleoenvironmental evolution of the Baltic Sea Basin through the last glacial cycle. ECORD Newsletter European Consortium for Ocean Research Drilling, (19), 14,15,23.
Toft, S. (2012). Kannibalisme. Natur og Museum, 51(2), 1-36.
Linnenschmidt, M., Beedholm, K., Wahlberg, M., Højer-Kristensen, J. & Nachtigall, P. E. (2012). Keeping returns optimal: gain control exerted through sensitivity adjustments in the harbour porpoise auditory system. Proceedings of the Royal Society B: Biological Sciences, 279(1736), 2237-2245. https://doi.org/10.1098/rspb.2011.2465
Riis, T., Dodds, W., Kristensen, P. B. & Baisner, A. J. (2012). Kvælstofomsætning i makrofyt vandløb. Abstract from Ferskvandssymposium 2012, Odense, Denmark.
Marchi, C. (2012). Landscape genetics: applications to the agricultural habitat. Aarhus University, Faculty of Science and Technology.
Nieto-Lugilde, D., Lenoir, J., Abdulhak, S., Aeschimann, D., Dullinger, S., Gégout, J.-C., Guisan, A., Pauli, H., Renaud, J., Theurillat, J.-P., Thuiller, W., Van Es, J., Vittoz, P., Willner, W., Wohlgemuth, T., Zimmermann, N. E. & Svenning, J.-C. (2012). Large-scale biotic interaction effects - tree cover interacts with shade toler-ance to affect distribution patterns of herb and shrub species across the Alps.
Sauer, P., Glombitza, C. & Kallmeyer, J. (2012). Leaching of organic acids from macromolecular organic matter by non-supercritical CO2. Abstract from EGU General Assembly, Vienna, Austria.
Sauer, P., Alawi, M., Glombitza, C. & Kallmeyer, J. (2012). Liberation of microbial substrates from macromolecular organic matter by non‐supercritical CO2. Abstract from AGU Fall Meeting 2012, San Francisco, United States.
Skommer, J., Helbo, S., Henty, K. & Brittain, T. (2012). Ligand binding, reactivity and biological activity of a distal pocket mutant of neuroglobin. International Journal of Biological Macromolecules, 51(3), 284-90. https://doi.org/10.1016/j.ijbiomac.2012.05.020
Deibel, D., Parrish, C. C., Grønkjær, P., Munk, P. & Gissel Nielsen, T. (2012). Lipid class and fatty acid content of the leptocephalus larva of tropical eels. Lipids, 47(6), 623-634. https://doi.org/10.1007/s11745-012-3670-5
Risgaard-Petersen, N. & Nielsen, L. P. (2012). Long distance electron transmission in marine sediment. Abstract from Electron transfer at the microbe-mineral interface, Norwich, United Kingdom.
Levi, P. S., Riis, T. & Baattrup-Pedersen, A. (2012). Macrophytes influence transient storage of managed lowland streams. Abstract from Society for Freshwater Science, Louisville, Kentucky, United States.
Mangelsdorf, K., Glombitza, C., Vieth, A., Vu, T. & Horsfield, B. (2012). Maturation related release of potential substrates from coals for deep microbial ecosystems. Abstract from The deep-sea and sub-seafloor frontiers conference, Sitges (Barcelona), Spain.
Srithi, K., Trisonthi, C., Wangpakapattanawong , P. & Balslev, H. (2012). Medicinal plants used in Hmong women’s healthcare in northern Thailand. Journal of Ethnopharmacology, 139, 119–135. https://doi.org/10.1016/j.jep.2011.10.028
Rasmussen, C., Carrión, A., Castro-Urgal, R., Chamorro, S., Gonzalez, V. H., Griswold, T. L., Herrera, H. W., McMullen, C. K., Olesen, J. M. & Traveset, A. (2012). Megachile timberlakei Cockerell (Hymenoptera, Megachilidae): Yet another bee species from the Galápagos Archipelago. Pan-Pacific Entomologist, 88, 98-102.
Overgaard, J. & Wang, T. (2012). Metabolic Transitions During Feast and Famine in Spiders. In M. D. McCue (Ed.), Comparative Physiology of Fasting, Starvation and Food Limitation (pp. 53-68). Springer. https://doi.org/10.1007/978-3-642-29056-5_5
Temkiv, T. S., Finster, K. & Gosewinkel, U. B. (2012). Metagenomics of clouds and atmosphere. In Encyclopedia of Metagenomics Springer Science+Business Media.
Nigro, L. M., Harris, K., Orcutt, B., Hyde, A., Clayton-Luce, S., Becker, K. & Teske, A. (2012). Microbial communities at the borehole observatory on the Costa Rica Rift flank (Ocean Drilling Program Hole 896A). Frontiers in Microbiology, 3, 1-11. https://doi.org/10.3389/fmicb.2012.00232
Funch, P. (2012). Micrognathozoa. In McGraw Hill Encyclopedia of Science & Technology, 11th Edition (pp. 87-88). McGraw-Hill. http://0-www.accessscience.com.library.hct.ac.ae/abstract.aspx?id=900166&referURL=/content/Micrognathozoa/900166