Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Vara-Vela, A. L., Karoff, C., Rojas Benavente, N. & Nascimento, J. P. (2023). Implementation of a satellite-based tool for the quantification of CH₄ emissions over Europe (AUMIA v1.0) - Part 1: forward modelling evaluation against near-surface and satellite data. Geoscientific Model Development, 16(21), 6413-6431. https://doi.org/10.5194/gmd-16-6413-2023

Kirsch, A., Bøjesen, E. D., Lefeld, N., Larsen, R., Mathiesen, J. K., Skjærvø, S. L., Pittkowski, R. K., Sheptyakov, D. & Jensen, K. M. Ø. (2023). High-Entropy Oxides in the Mullite-Type Structure. Chemistry of Materials, 35(20), 8664-8674. https://doi.org/10.1021/acs.chemmater.3c01830

Steininger, F., Zieger, S. E. & Koren, K. (2023). Timing matters: the overlooked issue of response time mismatch in pH-dependent analyte sensing using multiple sensors. Analyst, 148(23), 5957-5962. https://doi.org/10.1039/d3an01207g

Kubečka, J., Besel, V., Neefjes, I., Knattrup, Y., Kurtén, T., Vehkamäki, H. & Elm, J. (2023). Computational Tools for Handling Molecular Clusters: Configurational Sampling, Storage, Analysis, and Machine Learning. ACS Omega, 8(47), 45115-45128. https://doi.org/10.1021/acsomega.3c07412

Wu, H., Engsvang, M., Knattrup, Y., Kubečka, J. & Elm, J. (2023). Improved Configurational Sampling Protocol for Large Atmospheric Molecular Clusters. ACS Omega, 8(47), 45065-45077. https://doi.org/10.1021/acsomega.3c06794

Hartkopf-Fröder, C., Martini, E., Heilmann-Clausen, C., H. Neumann, F., Schäfer, P., Wilkes, H., Böcker, J. & Hottenrott, M. (2024). Eocene sediments and a fresh to brackish water biota from the early rifting stage of the Upper Rhine Graben (west of oil field Landau, southwest Germany): implications for biostratigraphy, palaeoecology and source rock potential. Palaeobiodiversity and Palaeoenvironments, 104(1), 53-102. https://doi.org/10.1007/s12549-023-00577-z

Fujita, T., Chen, Y., Kono, Y., Takahashi, S., Kasai, H., Campi, D., Bernasconi, M., Ohara, K., Yumoto, H., Koyama, T., Yamazaki, H., Senba, Y., Ohashi, H., Inoue, I., Hayashi, Y., Yabashi, M., Nishibori, E., Mazzarello, R. & Wei, S. (2023). Pressure-induced reversal of Peierls-like distortions elicits the polyamorphic transition in GeTe and GeSe. Nature Communications, 14(1), Article 7851. https://doi.org/10.1038/s41467-023-43457-y

Jefsen, O. H., Holde, K., McGrath, J. J., Rajagopal, V. M., Albiñana, C., Vilhjálmsson, B. J., Grove, J., Agerbo, E., Yilmaz, Z., Plana-Ripoll, O., Munk-Olsen, T., Demontis, D., Børglum, A., Mors, O., Bulik, C. M., Mortensen, P. B. & Petersen, L. V. (2024). Polygenic risk of mental disorders and subject-specific school grades. Biological Psychiatry, 96(3), 222-229. https://doi.org/10.1016/j.biopsych.2023.11.020

Nielsen, K. (2023). Behov for et tydeligt teknologibegreb: Om teknologi og teknologisk dannelse i STEM. MONA - Matematik- og Naturfagsdidaktik, 2023(4), 95-115.

Thyssen, L. A., Martinez i Quer, A., Arias, C. A., Ellegaard-Jensen, L., Carvalho, P. N. & Johansen, A. (2024). Constructed wetland mesocosms improve the biodegradation of microcystin-LR and cylindrospermopsin by indigenous bacterial consortia. Harmful Algae, 131, Article 102549. https://doi.org/10.1016/j.hal.2023.102549

Silva, G. C., Solís Neffa, V. G., Zuquim, G. & Balslev, H. (2023). Biogeography and environmental preferences of Butia yatay (Mart.) Becc. Ecology and Evolution, 13(11), Article e10749. https://doi.org/10.1002/ece3.10749

Viennet, T., Dubey, A., Törner, R., Droemer, M., Coote, P., Frueh, D., Takeuchi, K. & Arthanari, H. (2023). Decoding Atomic Addresses: Solution NMR Resonance Assignment of Proteins. In T. Polenova, C. Quinn & A. Gronenborn (Eds.), Integrated Structural Biology (pp. 1-42). The Royal Society of Chemistry. https://doi.org/10.1039/BK9781837670154-00001

Arkhipov, S. & Ørsted, S. (2023). Homotopy (Co)limits via Homotopy (Co)ends in General Combinatorial Model Categories. Applied Categorical Structures, 31(6), Article 47. https://doi.org/10.1007/s10485-023-09747-8

Parracciani, C., Buitenwerf, R. & Svenning, J. C. (2023). Impacts of Climate Change on Vegetation in Kenya: Future Projections and Implications for Protected Areas. Land, 12(11), Article 2052. https://doi.org/10.3390/land12112052

Juul-Kristensen, T., Keller, J. G., Borg, K. N., Hansen, N. Y., Foldager, A., Ladegaard, R., Ho, Y. P., Loeschcke, V. & Knudsen, B. R. (2023). Topoisomerase 1 Activity Is Reduced in Response to Thermal Stress in Fruit Flies and in Human HeLa Cells. Biosensors, 13(11), Article 950. https://doi.org/10.3390/bios13110950

Ansell, T. B., Song, W., Coupland, C. E., Carrique, L., Corey, R. A., Duncan, A. L., Cassidy, C. K., Geurts, M. M. G., Rasmussen, T., Ward, A. B., Siebold, C., Stansfeld, P. J. & Sansom, M. S. P. (2023). LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins. Nature Communications, 14(1), Article 7774. https://doi.org/10.1038/s41467-023-43392-y

Petersen, H. I., Al-Masri, W. F., Rudra, A., Mohammadkhani, S. & Sanei, H. (2023). Movable and non-movable hydrocarbon fractions in an oil-depleted sandstone reservoir considered for CO₂ storage, Nini West Field, Danish North Sea. International Journal of Coal Geology, 280, Article 104399. https://doi.org/10.1016/j.coal.2023.104399

Hallin, C. A., Kragh, G., Boucher, S. & Tjelle Holm, N.-K. (2023). Crowdsourcing Democracy? Trends, Potentials, and Risks of AI-assisted Digital Tools for Participation. Abstract from Democracy R&D Annual Conference 2023, Copenhagen, Denmark.

Kragh, G. (2022). UNESCO Open Science Toolkit: Building capacity for open science. UNESCO Publishing. https://doi.org/10.54677/DLYW1405

Kragh, G. (2023). UNESCO Open Science Toolkit: Engaging societal actors in open science. UNESCO Publishing. https://doi.org/10.5281/zenodo.7472827

Maindal, N., Poulsen, S. H., Harrits, A. & Kragh, G. (2023). Engaging Young People as Co-researchers in Mental Health Research during the COVID-19 Crisis: Ethical and Practical Reflections. Poster session presented at Citizen Science for Health Conference 2023, Enschede, Netherlands. https://doi.org/10.5281/zenodo.10041145

Maindal, N., Poulsen, S. H., Oddershede, K., Sejerkilde, M., Breiner Pedersen, S., Haghju, M., Sinclair, E., Harrits, A., Kirk, U. B., Sherson, J. & Kragh, G. (2023). Co-creating science communication and research with young people about their mental health during the COVID-19 pandemic. Poster session presented at Citizen Science for Health Conference 2023, Enschede, Netherlands. https://doi.org/10.5281/zenodo.10040092

Haklay, M., Iasillo, C., Mojica, S. & Kragh, G. (2023). What transformation is needed for research institutes to support citizen science?. Abstract from C*Sci 2023, Phoenix, United States.

Borges-Araújo, L., Patmanidis, I., Singh, A. P., Santos, L. H. S., Sieradzan, A. K., Vanni, S., Czaplewski, C., Pantano, S., Shinoda, W., Monticelli, L., Liwo, A., Marrink, S. J. & Souza, P. C. T. (2023). Pragmatic Coarse-Graining of Proteins: Models and Applications. Journal of Chemical Theory and Computation, 19(20), 7112-7135. https://doi.org/10.1021/acs.jctc.3c00733

Galbany, L., De Jaeger, T., Riess, A. G., Müller-Bravo, T. E., Dhawan, S., Phan, K., Stritzinger, M. D., Karamehmetoglu, E., Leibundgut, B., Burns, C., Peterson, E., D'Arcy Kenworthy, W., Johansson, J., Maguire, K. & Jha, S. W. (2023). An updated measurement of the Hubble constant from near-infrared observations of Type Ia supernovae. Astronomy and Astrophysics, 679, Article A95. https://doi.org/10.1051/0004-6361/202244893

Bilò, V., Hansen, K. A. & Mavronicolas, M. (2023). Computational Complexity of Decision Problems About Nash Equilibria in Win-Lose Multi-player Games. In A. Deligkas & A. Filos-Ratsikas (Eds.), Algorithmic Game Theory: SAGT 2023 (pp. 40-57). Springer. https://doi.org/10.1007/978-3-031-43254-5_3

Larsen, K. G. (2023). Bagging is an Optimal PAC Learner. In G. Neu & L. Rosasco (Eds.), Proceedings of COLT 2023 (Vol. 195, pp. 450-468). MLResearch Press.

Fleischhacker, N., Larsen, K. G. & Simkin, M. (2023). How to Compress Encrypted Data. In C. Hazay & M. Stam (Eds.), Advances in Cryptology – EUROCRYPT 2023: 42nd Annual International Conference on the Theory and Applications of Cryptographic Techniques, Lyon, France, April 23-27, 2023, Proceedings, Part I (pp. 551-577). Springer. https://doi.org/10.1007/978-3-031-30545-0_19

Fandina, O. N., Høgsgaard, M. M. & Larsen, K. G. (2023). The Fast Johnson-Lindenstrauss Transform Is Even Faster. In A. Krause, E. Brunskill, K. Cho, B. Engelhardt, S. Sabato & J. Scarlett (Eds.), Proceedings of ICML 2023 (Vol. 202, pp. 9689-9715). MLResearch Press.

Høgsgaard, M. M., Larsen, K. G. & Ritzert, M. (2023). AdaBoost is not an Optimal Weak to Strong Learner. In A. Krause, E. Brunskill, K. Cho, B. Engelhardt, S. Sabato & J. Scarlett (Eds.), Proceedings of ICML 2023 (Vol. 202, pp. 13118-13140). MLResearch Press.

Larsen, K. G. (2023). Fast Discrepancy Minimization with Hereditary Guarantees. In N. Bansal & V. Nagarajan (Eds.), Proceedings of the 2023 Annual ACM-SIAM Symposium on Discrete Algorithms (SODA) (pp. 276-289). Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611977554.ch11

Chung, E. & Larsen, K. G. (2023). Stronger 3SUM-Indexing Lower Bounds. In N. Bansal & V. Nagarajan (Eds.), Proceedings of the 2023 Annual ACM-SIAM Symposium on Discrete Algorithms (SODA) (pp. 444-455). Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611977554.ch19

Weckström, K., Weckström, J., Wischnewski, J., Davidson, T. A., Lauridsen, T. L., Landkildehus, F., Christoffersen, K. S. & Jeppesen, E. (2023). Unlocking environmental archives in the Arctic—insights from modern diatom-environment relationships in lakes and ponds across Greenland. Frontiers in Ecology and Evolution, 11, Article 1177638. https://doi.org/10.3389/fevo.2023.1177638

Genoni, M., Scaudo, A., Li Causi, G., Cabona, L., Landoni, M., Campana, S., Schipani, P., Claudi, R., Aliverti, M., Baruffolo, A., Ben-Ami, S., Biondi, F., Capasso, G., Cosentino, R., D’Alessio, F., D’Avanzo, P., Hershko, O., Kuncarayakti, H., Munari, M. ... Ventura, H. (2022). Progress on the simulation tools for the SOXS spectrograph: Exposure time calculator and End-to-End simulator. In Modeling, Systems Engineering, and Project Management for Astronomy X Article 121870C SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2628863

Mic, V., Sedmidubsky, J. & Zezula, P. (2023). CRANBERRY: Memory-Effective Search in 100M High-Dimensional CLIP Vectors. In O. Pedreira & V. Estivill-Castro (Eds.), Similarity Search and Applications - 16th International Conference, SISAP 2023, Proceedings (pp. 300-308). Springer. https://doi.org/10.1007/978-3-031-46994-7_26

Higuchi, N., Imamura, Y., Mic, V., Shinohara, T., Hirata, K. & Kuboyama, T. (2024). Fast Filtering for Similarity Search Using Conjunctive Enumeration of Sketches in Order of Hamming Distance. In M. Castrillon-Santana, M. De Marsico & A. Fred (Eds.), Proceedings of the 13th International Conference on Pattern Recognition Applications and Methods - ICPRAM (Vol. 1, pp. 499-510). SCITEPRESS Digital Library. https://doi.org/10.5220/0012322700003654

Zhu, Y., Honnet, C., Kang, Y., Zhu, J., Zheng, A. J., Heinz, K., Tang, G., Musk, L., Wessely, M. & Mueller, S. (2023). Demonstration of ChromoCloth: Re-Programmable Multi-Color Textures through Flexible and Portable Light Source. In UIST 2023 Adjunct - Adjunct Proceedings of the 36th Annual ACM Symposium on User Interface Software and Technology Article 73 Association for Computing Machinery. https://doi.org/10.1145/3586182.3615811

Ahmad, M., Cruguel, H., Ahmadpour, M., Vannucchi, N., Samie, N. M., Leuillet, C., Generalov, A., Li, Z., Madsen, M. & Witkowski, N. (2023). Uncovering the Electronic State Interplay at Metal Oxide Electron Transport Layer/Nonfullerene Acceptor Interfaces in Stable Organic Photovoltaic Devices. ACS Applied Materials and Interfaces, 15(47), 55065–55072. https://doi.org/10.1021/acsami.3c11103

Tang, S., Liu, Y., Opoku, H., Gregorsson, M., Zhang, P., Auroux, E., Dang, D., Mudring, A. V., Wågberg, T., Edman, L. & Wang, J. (2023). Fluorescent carbon dots from birch leaves for sustainable electroluminescent devices. Green Chemistry, 25(23), 9884-9895. https://doi.org/10.1039/d3gc03827k

Esposito, C., Audet, J., Levi, E. E., Zhang, W., Marshall, I. P. G. & Davidson, T. A. (2023). Patterns and processes of methane production and oxidation in shallow lakes under different nutrient and warming treatments. Abstract from ASLO Aquatic Sciences Meeting 2023, Palma, Spain.

Chulpongsatorn, N., Lunding, M. S., Soni, N. & Suzuki, R. (2023). Augmented Math: Authoring AR-Based Explorable Explanations by Augmenting Static Math Textbooks. In UIST 2023 - Proceedings of the 36th Annual ACM Symposium on User Interface Software and Technology (pp. 1-16). Article 92 Association for Computing Machinery. https://doi.org/10.1145/3586183.3606827

Frisk, M., Vejrup, M. K. S., Soerensen, F. K. & Wessely, M. (2023). ChromaNails: Re-Programmable Multi-Colored High-Resolution On-Body Interfaces using Photochromic Nail Polish. In UIST 2023 Adjunct - Adjunct Proceedings of the 36th Annual ACM Symposium on User Interface Software and Technology Article 72 Association for Computing Machinery. https://doi.org/10.1145/3586182.3615824

Strunge, K., Burgin, T., Golbek, T. W., Roeters, S. J., Pfaendtner, J. & Weidner, T. (2023). Umbrella-like Helical Structure of α-Synuclein at the Air-Water Interface Observed with Experimental and Theoretical Sum Frequency Generation Spectroscopy. The Journal of Physical Chemistry Letters, 14(49), 11030-11035. https://doi.org/10.1021/acs.jpclett.3c02543

Arad, E., Pedersen, K. B., Malka, O., Mambram Kunnath, S., Golan, N., Aibinder, P., Schiøtt, B., Rapaport, H., Landau, M. & Jelinek, R. (2023). Staphylococcus aureus functional amyloids catalyze degradation of β-lactam antibiotics. Nature Communications, 14(1), Article 8198. https://doi.org/10.1038/s41467-023-43624-1

Freiesleben, T. H., Thomsen, K. J., Sellwood, E., Liu, J. & Murray, A. S. (2023). Testing new kinetic models and calibration methods for Rock Surface Luminescence Exposure dating using controlled experiments. Radiation Measurements, 169, Article 107033. https://doi.org/10.1016/j.radmeas.2023.107033

Arends, C., Frahm, J. & Hilgert, J. (2025). Edge Laplacians and Edge Poisson Transforms for Graphs. Potential Analysis, 63(2), 631-677. https://doi.org/10.48550/arXiv.2312.09101, https://doi.org/10.1007/s11118-024-10184-y

Ganesh, C., Kondi, Y. M., Orlandi, C., Pancholi, M. R., Takahashi, A. & Tschudi, D. (2023). Witness-Succinct Universally-Composable SNARKs. In C. Hazay & M. Stam (Eds.), Advances in Cryptology – EUROCRYPT 2023: 42nd Annual International Conference on the Theory and Applications of Cryptographic Techniques, Lyon, France, April 23–27, 2023, Proceedings, Part II (pp. 315–346). Springer. https://doi.org/10.1007/978-3-031-30617-4_11

Kohlweiss, M., Pancholi, M. R. & Takahashi, A. (2023). How to Compile Polynomial IOP into Simulation-Extractable SNARKs: A Modular Approach. In G. Rothblum & H. Wee (Eds.), Theory of Cryptography: Book Subtitle 21st International Conference, TCC 2023, Taipei, Taiwan, November 29–December 2, 2023, Proceedings, Part III (pp. 486–512). Springer. https://doi.org/10.1007/978-3-031-48621-0_17

Ganesh, C., Orlandi, C., Pancholi, M. R., Takahashi, A. & Tschudi, D. (2025). Fiat-Shamir Bulletproofs are Non-Malleable (in the Random Oracle Model). Journal of Cryptology, 38(1), Article 11. https://doi.org/10.1007/s00145-024-09525-2

Hansen, K. E., Pearce, C. & Seidenkrantz, M.-S. (2023). Response of Arctic benthic foraminiferal traits to past environmental changes. Scientific Reports, 13(1), Article 22135. https://doi.org/10.1038/s41598-023-47603-w

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