Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Vorum, H., Madsen, P., Rasmussen, H. H., Etzerodt, M., Svendsen, I., Celis, J. E. & Honoré, B. (1996). Expression and divalent cation binding properties of the novel chemotactic inflammatory protein psoriasin. Electrophoresis, 17(11), 1787-96. https://doi.org/10.1002/elps.1150171118

Jinquan, T., Vorum, H., Larsen, C. G., Madsen, P., Rasmussen, H. H., Gesser, B., Etzerodt, M., Honoré, B., Celis, J. E. & Thestrup-Pedersen, K. (1996). Psoriasin: a novel chemotactic protein. Journal of Investigative Dermatology, 107(1), 5-10.

Arge, L. & Toma, L. (2005). External Data Structures for Shortest Path Queries on Planar Digraphs. In X. Deng & D. Du (Eds.), Algorithms and Computation: 16th International Symposium, ISAAC 2005, Sanya, Hainan, China, December 19-21, 2005. Proceedings (pp. 328-338). Springer. https://doi.org/10.1007/11602613_34

Agarwal, P. K., Arge, L. & Yi, K. (2005). I/O-Efficient Construction of Constrained Delaunay Triangulations. In G. S. Brodal & L. Stefano (Eds.), Algorithms - ESA 2005: 13th Annual European Symposium, Palma de Mallorca, Spain, October 3-6, 2005. Proceedings (pp. 355-366). Springer. https://doi.org/10.1007/11561071_33

Arge, L., Eppstein, D. & Goodrich, M. T. (2005). Skip-webs: Efficient distributed data structures for multi-dimensional data sets. In M. Aguilera & J. Aspners (Eds.), Proceedings of 24th ACM SIGACT-SIGOPS Symposium on Principles of Distributed Computing (pp. 69-76). Association for Computing Machinery. https://doi.org/10.1145/1073814.1073827

Agarwal, P. K., Arge, L. & Yi, K. (2005). An optimal dynamic interval stabbing-max data structure? In Proceedings of the sixteenth annual ACM-SIAM symposium on Discrete algorithms (pp. 803-812). Society for Industrial and Applied Mathematics.

Arge, L., de Berg, M., Haverkort, H. & Yi, K. (2004). The Priority R-Tree: A Practically Efficient and Worst-Case Optimal R-tree. In G. Weikum, A. C. König & S. Dessloch (Eds.), Proceedings of ACM SIGMOD International Conference on Management of Data (pp. 347-358). Association for Computing Machinery. https://doi.org/10.1145/1007568.1007608

Offersen, B. V., Pfeiffer, P., Andreasen, P. & Overgaard, J. (2007). Urokinase plasminogen activator and plasminogen activator inhibitor type-1 in non-small cell lung cancer: Relation to prognosis and angiogenesis. Lung Cancer.

Wygrecka, M., Markart, P., Morty, R. E., Kanse, S. M., Andreasen, P., Wind, T., Vuenther, V. & Preissner, K. T. (2007). Plasminogen activator inhibitor-1 is a major physiological inhibitor of factor VII-activating protease. Journal of Biological Chemistry.

Zhao, G., Yuan, C., Wind, T., Andreasen, P., Huang, Z. & Huang, M. (2007). New pharmacophore for serine protease inhibition revealed by crystal structure of human urokinase-type plasminogen activator complexed with a cyclic peptidyl inhibitor, upain-1. J. Struct. Biol., 160.

Blouse, G., Peterson, C. B., Dupont, D. M., Ploug, M., Gårdsvoll, H., Perro, C. R., Minor, K. H., Shore, J. D. & Andreasen, P. (2007). PAI-1-vitronectin interactions involve an extended binding surface and mutual conformational rearrangements. Poster session presented at XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Brodersen, A. T., Christensen, M., Gammelmark, H., Gjerlufsen, T., Kristensen, M., Kramp, G., Kyng, M., Mahler-Andersen, J. S., Olsen, J. W., Mogensen, P. H., Frølund, J., Revsbæk, M. & Ørbæk, P. (2007). PalCom Deliverable 52 (2.7.3) Dissemination - Product version 2. http://www.ist-palcom.org/publications/deliverables/Deliverable-52-[2.14.6]-dissemination.pdf

Andersen, L. M., Wind, T., Hansen, H. D., Blouse, G., Christensen, A., Jensen, J. K., Malmendal, A., Nielsen, N. C. & Andreasen, P. (2007). Urokinase-type plasminogen activator-inhibiting cyclic peptides demonstrate new modalities for inhibition of serine proteases. Poster session presented at XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Gao, S., Kroghdahl, A., Sørensen, S. A., Dabelsteen, E. & Andreasen, P. (2007). Overexpression of protease nexin-1 mRNA in oral squamous cell carcinomas. Poster session presented at XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Dupont, D. M., Jensen, J. K., Mathiasen, L., Blouse, G., Wind, T. & Andreasen, P. (2007). Conformational probes and activity regulators of plasminogen activator inhibitor-1, isolated from phage-displayed disulphide bridge-constrained peptide libraries. Poster session presented at XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Büscher, M., Christensen, M., Kyng, M., Kramp, G., Kristensen, M., Mogensen, P. H., Olsen, J. W., Frølund, J., Revsbæk, M., Ørbæk, P., Mahler-Andersen, J. S., Brodersen, A. T., Linde, P., Marti, P., Greenwood, D. & al, E. (2007). PalCom Deliverable 50 (2.7.3). WP7-12 Prototypes final versions. http://www.ist-palcom.org/publications/deliverables/Deliverable-50-[2.7.3]-prototypes-final.pdf

Andreasen, P. (2007). PAI-1 - a potential therapeutic target in cancer. Current Drug Targets, 8, 1020-1041.

Gao, S., Krogdahl, A., Sørensen, J. A., Dabelsteen, E. & Andreasen, P. (2007). Methylation of the PAI-1 gene in oral squamous cell carcinomas and normal oral mucosa. Poster session presented at XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Bødker, J. S., Blouse, G., Dupont, D. M. & Andreasen, P. (2007). Dissecting serpin-protease reaction pathways by the use of monoclonal antibodies. Poster session presented at XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Kristensen, M., Büscher, M., Christensen, M., Kramp, G., Mogensen, P. H., Ørbæk, P., Gammelmark, H., Mahler-Andersen, J. S., Kyng, M., Brodersen, A. T., Olsen, J. W., Marti, P. & al, E. (2007). PalCom Deliverable 48 (2.14.5). Demonstration kit. http://www.ist-palcom.org/publications/deliverables/Deliverable-48-[2.14.5]-dissemination.pdf

Dupont, D. M., Madsen, J. B., Kjems, J. & Andreasen, P. (2007). A novel type of agent blocking the association of uPA to its receptor uPAR: uPA-binding aptamers. Abstract from XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Blouse, G., Bøtkjær, K. A., Deryugina, E. I., Kristiansen, S. K., Byzuk, O., Mortensen, K. K., Quigley, J. P. & Andreasen, P. (2007). Discovery of a novel zymogen targeting inhibitor of urokinase-type plasminogen activator: Evidence for structural flexibility of the protease domain. Abstract from XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Andreoni, G., Bagnoli, F., Büscher, M., Christensen, M., Corry, A. V., Ehn, P., Enquist, H., Frølund, J., Gjerlufsen, T., Ghizzioli, R., Greenwood, D., Grönwall, E., Hansen-Miller, D., Kramp, G., Kristensen, M., Kyng, M., Linde, P., Marti, P., Mogensen, P. H. ... Olsen, J. W. (2007). PalCom Deliverable 51 (2.13.3). Fieldwork: Documentation of Work Analysis, Participatory Design and Evaluation of Prototypes.

Andersen, P., Fors, D., Forsström, T., Gjerlufsen, T., Ghizzioli, R., Greenwood, D., Hedin, G., Ingstrup, M., Magnusson, B., Nymand, E., Olsen, J. W., Robertz, S., Schmid, R., Spring, J. & Tollmar, K. (2007). PalCom Deliverable 54 (2.2.3.). Open Architecture. http://www.ist-palcom.org/publications/deliverables/Deliverable-54-[2.2.3]-open-architecture.pdf

Hedin, G., Magnusson, B., Fors, D. S., Robertz, S., Gjerlufsen, T. & Andersen, P. (2007). PalCom Deliverable 49 (2.6.3). Support for End-User Composition in PalCom. http://www.ist-palcom.org/publications/deliverables/Deliverable-49-[2.6.3]-end-user-composition.pdf

Andersen, P. (2007). PalCom Deliverable 47 (2.14.4). Dissemination. PalCom Open Source. http://www.ist-palcom.org/publications/deliverables/Deliverable-47-[2.14.4]-dissemination.pdf

Rasmussen, T. L., Thomsen, E., Marta A., S., Simon, J., Anders, S. & Nalan, K. (2007). Paleocenographic evolution of the SW Svalbard margin (76°N) since 20,000 ¹⁴C yr BP. Quaternary Research, 67(1), 100-114.

Barndorff-Nielsen, O. E. & Leonenko, N. N. (2005). Burgers' turbulence problem with linear or quadratic external potential. Journal of Applied Probability, 42(2), 550-565. https://doi.org/10.1239/jap/1118777187

Barndorff-Nielsen, O. E. & Leonenko, N. N. (2005). Spectral properties of superpositions of Ornstein-Uhlenbeck type processes. Meth. Comp. Appl. Prob., 7(3), 335-352. https://doi.org/10.1007/s11009-005-4521-0

Barndorff-Nielsen, O. E. & Shephard, N. (2005). How accurate is the asymptotic approximation to the distribution of realised variance? In D. W. K. Andrews & J. H. Stock (Eds.), Identification and inference for econometric models: essays in honor of Thomas Rothenberg (pp. 306-331). Cambridge University Press.

Tjell, S. & Fernandes, J. M. (2008). Expressing Environment Assumptions and Real-time Requirements for a Distributed Embedded System with Shared Variables: Proceedings of IFIP TC 10 Working Conference on Distributed and Parallel Embedded Systems (DIPES at IFIP World Computer Congress 2008). I F I P, 79-88.

Tjell, S. & Lassen, K. B. (2008). Developing Tool Support for Problem Diagrams with CPN and VDM++: Modelling and Analysis in VDM: Proceedings of the Fourth VDM/Overture Workshop. Modelling and Analysis in VDM: Proceedings of the Fourth VDM/Overture Workshop. Innovations in Systems and Software Engineering, (3), 25-34.

Haaning, J., Oxvig, C., Overgaard, M. T., Ebbesen, P., Kristensen, T. & Sottrup-Jensen, L. (1996). Complete cDNA sequence of the preproform of human pregnancy-associated plasma protein-A. Evidence for expression in the brain and induction by cAMP. European Journal of Biochemistry, 237(1), 159-163. https://doi.org/10.1111/j.1432-1033.1996.0159n.x

Haaning, J., Oxvig, C., Overgaard, M. T. & Sottrup-Jensen, L. (1997). Simple and reliable procedure for PCR amplification of genomic DNA from yeast cells using short sequencing primers. IUBMB Life, 42(1), 169-72.

Støchkel, K., Kadhane, U., Andersen, J. U., Holm, A. I. S., Hvelplund, P., Kirketerp, M.-B. S., Koefoed-Larsen, M., Lykkegaard, M. K., Nielsen, S. B., Panja, S. & Zettergren, H. (2008). A new technique for time-resolved daughter ion mass spectrometry on the microsecond to millisecond time scale using an electrostatic ion storage ring. Review of Scientific Instruments, 79(023107).

Stokkendal, J., Friis, H., Svendsen, J. B., Poulsen, M. L. K. & Hamberg, L. (2009). Predictive permeability Variations in a Hermod Sand Reservoir, Stine Segments, Siri Field, Danish North Sea. Marine and Petroleum Geology, 26(3), 397-415.

Zhang, W. (2005). Mobile Role-Playing-Game Engine with J2ME. Computer Engineering and Applications, 41(33), 115-117.

Zhang, W. & Ding, P. (2005). Debugging Environment for a Meta-programming Language. Mini-Micro Systems, 26(4), 707-709.

Zheng, S. & Zhang, W. (2005). The DW Shortest Path Algorithm and Its Application In Logic Diagram Routing. Jisuanji Gongcheng, 31(19), 192-194.

Du, Q. & Zhang, W. (2005). Performance optimization analysis based on oracle database application system. Jisuanji Gongcheng, 31(14), 91-93.

Silva, A., Pedersen, K., Diekhöner, L., Morgen, P. & Li, Z. (2007). Ordered Au(111) layers on Si (111). J. Vac. Sci. Technol. A., 25(4), 908-911.

Bech, L., Li, Z. & Onsgaard, J. (2007). Valence band studies of Ag and Pd codeposited on Ru(0 0 0 1). Journal of Electron Spectroscopy and Related Phenomena, 156-158, 102-106.

Kjeldsen, T. K., Nikolopoulos, L. & Madsen, L. B. (2007). Solving the m-mixing problem for the three-dimensional time-dependent Schrödinger equation by rotations: Application to strong-field ionization of H₂⁺. Physical Review A, 75(063427).

Brewer, B. J., Bedding, T. R., Kjeldsen, H. & Stello, D. (2007). Bayesian inference from observations of solar-like oscillations. Astrophysical Journal, 654(1), 551-557. https://doi.org/10.1086/508766

Morgen, P., Bahari, A., Pedersen, K. & Li, Z. (2007). Plasma assisted growth of ultrathin nitrides on Sisurfaces under ultrahigh vacuum conditions. Journal of Physics, 86, 012019.

Nikolopoulos, L. & Lambropoulos, P. (2007). Time-dependent theory of double ionization of helium under XUV radiation. J. Phys. B: At. Mol. Opt. Phys. 1347-1357, 40, 1347-1357.

Kristensen, L. K. (2007). N-observations and radar orbits. Celestial Mechanics and Dynamical Astronomy, 98(3), 203-215. https://doi.org/10.1007/s1569-007-9081-x

Lammich, L., Altevogt, S., Buhr, H., Kreckel, H., Krohn, S., Lange, M., Strasser, D., Repnow, R., Grieser, M., Schinke, R., Qu, Z.-W., Zhu, H., Schwalm, D., Zajfman, D. & Wolf, A. (2007). Electron-impact dissociation and transient properties of a stored LiH2-beam. The European Physical Journal D: Atomic, Molecular, Optical and Plasma Physics, 41(1), 103-111.

Wang, Z. X., Ding, X. M., Li, Z., Zhan, Y. Q., Bergenti, I., Dediu, V. A., Taliani, C., Xie, Z. T., Ding, B. F., Hou, X. Y., Zhang, W. H. & Xu, F. Q. (2007). Modification of the organic/La0.7Sr0.3MnO3 interfaceby in situ gas treatment. Applied Surface Science, 253, 9081-9084.

Si, P., Chi, Q., Li, Z., Ulstrup, J., Møller, P. J. & Mortensen, J. (2007). Functional Polythiophene Nanoparticles: Size-ControlledElectropolymerization and Ion Selective Response. Journal of the American Chemical Society, 129, 3888-3896.

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