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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Gerhardy, P. & Kohlenbach, U. (2006). Strongly uniform bounds from semi-constructive proofs. Annals of Pure and Applied Logic, 141, 89-107.
Falsig, H., Gross, A., Kongsted, J., Osted, A., Mikkelsen, K. V. & Christiansen, O. (2006). The uptake of phenol on aerosol particles. Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory, 110, 660-670.
Gerhardy, P. (2006). Functional interpretation and modified realizability interpretation of the double-negation shift. In A. Beckmann, U. Berger, B. Löwe & J. V. Tucker (Eds.), Logical Approaches to Computational Barriers: CiE 2006 (Vol. CSR 7-2006 in Computer Science Report Series). University of Wales Swansea.
Paterson, M. J., Christiansen, O., Pawlowski, F., Jørgensen, P., Hättig, C., Helgaker, T. & Salek, P. (2006). Benchmarking two-photon absorption with CC3 quadratic response theory,and comparison with density-functional response theory. Journal of Chemical Physics, 124, 054322-1- 054322-10.
Luis, J. M., Kirtman, B. & Christiansen, O. (2006). A variational approach for calculating Franck-Condon factors including mode-modeanharmonic coupling. Journal of Chemical Physics, 125, 154114-1- 154114-12.
Kongsted, J., Osted, A., Mikkelsen, K. V. & Christiansen, O. (2006). The (Hyper)Polarizabilities of Liquid Water Modelled UsingCoupled Cluster/Molecular Mechanics Response Theory Methods. In Atoms, Molecules and Clusters in electric fields.Theoretical approaches to the calculation of electric polarizability Imperial College Pres.
Christiansen, O., Coriani, S., Gauss, J., Hättig, C., Jørgensen, P., Pawlowski, F. & Rizzo, A. (2006). Accurate NLO properties for small molecules. Methods and results. In Nonlinear optical properties of matter:From molecules to condensed phases Kluwer Academic Publishers.
Kirkegaard, C. & Møller, A. (2006). Type Checking with XML Schema in XACT. Paper presented at PLAN-X 2006: ACM SIGPLAN Workshop on Programming Language Technologies for XML, Charleston, SC, United States.
Hansen, F. A. (2006). Ubiquitous Annotation Systems: Technologies and Challenges. In Proceedings of the Seventeenth Conference on Hypertext and Hypermedia (pp. 121-132). Association for Computing Machinery. https://doi.org/10.1145/1149941.1149967
Hansen, E. M., Christensen, B. T., Kristensen, K. & Jensen, L. S. (2002). Kulstofomsætning under elefantgræs belyst ved forekomst af 13C. In B. T. Christensen (Ed.), Biomasseudtag til energiformål?: konsekvenser for jordens kulstofbalance i land- og skovbrug (pp. 41-47)
Aguirre, Z., Kvist, L. P. & Sanchez, O. (2006). Bosques secos en Ecuador y su diversidad. In M. Moraes, B. Øllgaard, L. P. Kvist, F. Borchsenius & H. Balslev (Eds.), Botánica Económica de los Andes Centrales (pp. 162-187)
Møller, A. (2006). Static Analysis for Event-Based XML Processing. BRICS Report Series, (RS-06-16).
Shiryaev, A. (2006). Kolmogorov and the Turbulence. Thiele Centre, Institut for Matematiske Fag, Aarhus Universitet.
Bartels-Jónsdóttir, H. B., Knudsen, K. L., Schönfeld, J., Lebreiro, S. & Abrantes, F. (2006). Recent benthic foraminifera from the Tagus Prodelta and Estuary, Portugal: microhabitats, assemblage composition and stable isotopes. Zitteliana, A 46, 91-104.
Bartels-Jónsdóttir, H. B., Knudsen, K. L., Abrantes, F., Lebreiro, S. & Eiríksson, J. (2006). Climate variability during the last 2000 years in the Tagus Prodelta, western Iberian Margin: Benthic foraminifera and stable isotopes. Marine Micropaleontology, 59, 83-103.
Heilmann-Clausen, C. (2006). Koralrev og lerhav (ekskl. Danien). In G. Larsen (Ed.), Naturen i Danmark. Geologien (pp. 181-226 ekskl. Danien). Gyldendal.
Eiríksson, J., Bartels-Jónsdóttir, H. B., Cage, A. G., Gudmundsdóttir, E. R., Klitgaard-Kristensen, D., Marret, F., Rodrigues, T., Abrantes, F., Austin, W. E. N., Jiang, H., Knudsen, K. L. & Sejrup, H.-P. (2006). Variability of the North Atlantic Current during the last 2000 years based on shelf bottom water and sea surface temperature along an open ocean/shallow marine transect in western Europe. The Holocene, 16, 1017-1029.
Fitzi, M., Wolf, S. & Wullschleger, J. (2006). On the Power of Imperfect Broadcast. In Ikke angivet (pp. 504-505). IEEE Press.
Jiang, H., Ren, J., Knudsen, K. L., Eiríksson, J. & Ran, L. (2006). Summer sea-surface temperatures and climate events on the North Icelandic shelf through the last 3000 years. Chinese Science Bulletin, 52(22), 2657-2664.
Heilmann-Clausen, C., Abrahamsen, N., King, C., Nielsen, O. B. & Thomsen, E. (2006). Evidence from the North Sea Basin for a Late Eocene glaciation. In Climate & Biota of the Early Paleogene, Bilbao 2006. Volume of Abstracts (pp. 61). University of the Basque Country.
Fitzi, M. & Hirt, M. (2006). Optimally Efficient Multi-valued (Byzantine) Agreement. In Proceedings of the 25th ACM SIGACT-SIGOPS Symposium on Principles of Distributed Computing (pp. 163-168). Society for Industrial and Applied Mathematics.
Ran, L., Jiang, H., Knudsen, K. L., Eiríksson, J. & Gu, Z. (2006). Diatom response to the Holocene Climatic Optimum on the North Icelandic Shelf. Marine Micropaleontology, 60, 226-241.
Fitzi, M., Garay, J. A., Gollakota, S., Rangan, C. P. & Srinathan, K. (2006). Round-optimal and Efficient Verifiable Secret Sharing. In S. Halevi & T. Rabin (Eds.), Theory of Cryptography, Third Theory of Cryptography Conference, TCC 2006 Proceedings (pp. 329-342). Springer. https://doi.org/10.1007/11681878_17
Hebbeln, D., Knudsen, K. L., Gyllencreutz, R., Kristensen, P. H., Klitgaard-Kristensen, D., Backman, J., Scheurle, C., Jiang, H., Gil, I., Smelror, M., Jones, P. D. & Sejrup, H.-P. (2006). Late Holocene coastal hydrographic and climate changes in the eastern North Sea. The Holocene, 16, 987-1001.
Bartels-Jónsdóttir, H. B., Knudsen, K. L., Schönfeld, J. & Eiríksson, J. (2006). Modern distribution of benthic foraminifera from the Tagus prodelta and estuary, Portugal. In Anuario do Instituto de Geociencias (Vol. 29-1, pp. 581)
Agarwal, S. & Frandsen, G. S. (2006). A New GCD Algorithm for Quadratic Number Rings with Unique Factorization. In J. R. Correa, A. Hevia & M. A. Kiwi (Eds.), LATIN 2006: Theoretical Informatics, Proceedings of 7th Latin American Symposium (Valdivia, Chile, March 20-24, 2006) (pp. 30-42). Springer. https://doi.org/10.1007/11682462_8
Bartels-Jónsdóttir, H. B., Knudsen, K. L. & Eiríksson, J. (2006). A 2000 year record of climate and hydrography on the North Icelandic Shelf. In The Natural Science Symposium in Reykjavik 2006 (Vol. Poster V011, pp. Poster V011). University of Iceland.
Frandsen, G. S. & Frandsen, P. F. (2006). Dynamic Matrix Rank. In M. Bugliesi, B. Preneel, V. Sassone & I. Wegener (Eds.), ICALP 2006: Automata, Languages and Programming: Proceedings (part I) of 33rd International Colloquium (Venice, Italy, July 10-14, 2006) (pp. 395-406) https://doi.org/10.1007/11786986_35
Eiríksson, J., Knudsen, K. L., Larsen, G., Heinemeier, J. & Símonarson, L. A. (2006). Comparison of tephrochronological and radiocarbon based age models for marine sedimentary records in the northern North Atlantic. In Eos Trans AGU, Fall Meeting Supplement (Vol. 87 (52), pp. PP33A-1773)
Eiríksson, J., Larsen, G., Símonarson, L. A. & Knudsen, K. L. (2006). Focus on climate change and palaeoceanography. In Natural Science Symposium in Reykjaík 2006 (pp. Poster V013). University of Iceland.
Heinemeier, J., Eiríksson, J., Larsen, G., Knudsen, K. L. & Símonarson, L. A. (2006). Marine reservoir age variability in the Iceland Sea. In Book of Abstracts (pp. 336)
Knudsen, K. L., Bartels-Jónsdóttir, H. B. & Eiríksson, J. (2006). Foraminiferal indication of climatic variability off North Iceland during the last 2000 years. In Anuario do Instituto de Geociencias (Vol. 29-1, pp. 266-267)
Knudsen, K. L., Eiríksson, J., Jiang, H., Bartels-Jónsdóttir, H. B. & Ran, L. (2006). Holocene Climatic Variability off North Iceland: A Comparison of the Thermal Maximum and the Last 2000 Years. In Eos Trans AGU, Fall Meeting Supplement (Vol. 87 (52), pp. PP43A-1221)
Knudsen, K. L., Eiríksson, J., Heinemeier, J., Larsen, G. & Símonarson, L. A. (2006). Temporal changes in marine reservoir ages as a tracer of oceanographic shifts in the Iceland Sea. In Carlsberg Dating Conference, Programme and Abstracts (pp. 35). University of Copenhagen.
Sicre, M.-A., Ezat, U., Guimbaud, E., Jacob, J., Eiríksson, J., Knudsen, K. L. & Jansen, E. (2006). Sub-decadal variability of the sea surface temperatures off the North Icelandic shelf during the 0-2 and 6-8.2 ka intervals. In Geophysical Union Abstracts (Vol. 8, pp. 02061)
Ernst, E. (2006). Reconciling Virtual Classes with Genericity. In Modular Programming Languages: 7th Joint Modular Languages Conference, JMLC 2006, Oxford, UK, September 2006, Proceedings (pp. 57-72). Springer. https://doi.org/10.1007/11860990_5
Ernst, E., Ostermann, K. & Cook, W. R. (2006). A Virtual Class Calculus. In Proceedings of Conference Record of POPL 2006: The 33rd ACM SIGPLAN-SIGACT Symposium on Principles of Programming Languages (pp. 270-282). Association for Computing Machinery. https://doi.org/10.1145/1111320.1111062
Danvy, O., O'Hearn, P. & Wadler, P. (2007). Preface. Theoretical Computer Science, 375(1-3), 1-2. https://doi.org/10.1016/j.tcs.2006.12.024

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Lykke, A. M. (2004). Lokal viden om ørkenspredning. Jyllandsposten 29. august 2004.
Campbell, K. L. & Weber, R. E. (2004). Mapping physiological attributes of haemoglobin oxygen affinity onto a molecular phylogeny reveals novel insights into the evolution and radiation of talpid moles. Paper presented at International. Symposium on Animal Physiology, Biotechnikum Greifswald, Germany, 3-5 June.
Toft, S. (2004). Mejerne. Natur og Museum, 3.
Shlimon, A. G., Friedrich, M. W., Niemann, H., Ramsing, N. B. & Finster, K. (2004). Methanobacterium aarhusense sp. nov., a novel methanogen isolated from a marine sediment (Aarhus Bay, Denmark). International Journal of Systematic and Evolutionary Microbiology, 54(3), 759-763. https://doi.org/10.1099/ijs.0.02994-0
Weber, R. E., Voelter, W., Fago, A., Echner, H., Campanella, E. & Low, P. S. (2004). Modulation of red cell glycolysis: interactions between vertebrate hemoglobins and cytoplasmic domains of band 3 red cell membrane proteins. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology, 287, 454-464.
Larsen, K. (2004). Morten Lange 1919-2003. Mindeord. Nordic Journal of Botany, 23, 153-154.
Bonaventura, C., Crumbliss, A. L. & Weber, R. E. (2004). New insights into the proton-dependent oxygen affinity of Root effect haemoglobins. Acta Physiologica, 182, 245-258.
Nicolaisen, M. H., Risgaard-Petersen, N., Revsbech, N. P., Reichardt.W. & Ramsing, N. B. (2004). Nitrification-denitrification dynamics and community structure of ammonia oxidizing bacteria in a high yield irrigated Philippine rice field. FEMS Microbiology Ecology, 49, 359-369.
Øllgaard, B. (2004). Novelties in Neotropical Lycopodiaceae. Nordic Journal of Botany, 23(1), 31-47.
Barfod, A. S. (2004). Nyt syn på blomsterplanternes afstamning. In K. Finster & D. Parker (Eds.), Kompendium i Natur og Teori Biologisk Institut, AU..
Barfod, A., Balslev, H. & Nielsen, I. (2004). Orbituary - Jonas Erik Lawesson. Nordic Journal of Botany, 23(1), 5-10.
Pirow, R. & Weber, R. E. (2004). Oxygen binding and its allosteric control in haemoglobin of the branchiopod crustacean Triops cancriformis. Paper presented at International Symposium on Animal Physiology, Biotechnikum Greifswald, 3-5 June.
Fago, A., Hundahl, C., Weber, R. E., Dewilde, S. & Moens, L. (2004). Oxygen binding properties of human neuroglobin and cytoglobin. Paper presented at International Symposium on Animal Physiology, Biotechnikum Greifswald, 3-5 June, 2004.
Kjeldsen, K. U., Joulian, C. & Ingvorsen, K. (2004). Oxygen tolerance of sulfate-reducing bacteria in activated sludge. Environmental Science & Technology, 38, 2038-2043.
Tompkins, D. M., Mouritsen, K. N. & Poulin, R. (2004). Parasite-induced surfacing in the cockle Austrovenus stutchburyi: adaptation or not? Journal of Evolutionary Biology, 17, 247-256.
Nielsen, L. P., Enrich-Prast, A. & Esteves, F. A. (2004). Pathways of organic matter mineralization and nitrogen regeneration in the sediment of five tropical lakes. Acta Limnologica Brasiliensia, 16(2), 193-202.
Barth, H., Larsen, P. S., Roepstorff, P., Boero, F., Dolan, J., Sommer, U., Zupo, V., Vermaat, J., Anderson, T. R., Kneib, R. T., Lomstein, B. A., Jenkinson, I. & Shumway, S. E. (2004). Peer review: journal articles versus research proposals. Mar. Ecol. Prog. Ser., 277, 301-309.
Arias, C. A. & Brix, H. (2004). Phosphorus removal in constructed wetlands: Can suitable alternative media be identified?. Paper presented at Avignon, France, 26-30 September 2004, Avignon, France.
Wessig, P., Glombitza, C., Müller, G. & Teubner, J. (2004). Photochemical Preparation of Highly Functionalized 1-Indanones. Journal of Organic Chemistry, 69(22), 7582-7591. https://doi.org/10.1021/jo040173x
Collie, JS., Richardson, K., Steele, JH. & Mouritsen, L. T. (2004). Physical forcing and ecological feedbacks in marine regimeshifts. ICES C.M., (M:06).
Lassen, M. F., Bramm., M. E., Richardson, K., Yusoff, F. & Shariff, M. (2004). Phytoplankton community composition and size distribution in the Langat River estuary, Malaysia. Estuaries and Coasts, 27(4), 716-728.
Overgaard, J., Stecyk, J. A. W., Gesser, H., Wang, T., Gamperl, A. K. & Farrell, A. P. (2004). Preconditioning stimuli do not benefit the myocardium of hypoxia-tolerant rainbow trout (Oncorhynchus mykiss). Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 174, 329-340.
Jensen, L. U., Lawesson, J., Balslev, H. & Forchhammer, M. C. (2004). Predicting the distribution of Carpinus betulus in Denmark with Ellenbergs Climate Quotient. Nordic Journal of Botany, 23, 57-67.
Wang, T., Axelsson, M., Altimiras, J., Klein, W., Andrade, D., Abe, A. S., Ip, A., Lee, S. & Martelli, P. (2004). Pressure separation in the undivided snake heart: Correlations with high metabolic rate during digestion or incubation of eggs? (pp. 51-51).
Meyer, R. L., Zeng, R., Giugliano, V., Keller, J. & Blackall, L. L. (2004). Production of N2O from denitrifying bacteria using stored carbon as electron donor. Paper presented at International Symposium for Microbial Ecology, Cancun, Mexico.
Neretin, LN., Bottcher, ME., Jørgensen, BB., Volkov, II., Luschen, H. & Hilgenfeldt, K. (2004). Pyritization processes and greigite formation in the advancing sulfidization front in the Upper Pleistocene sediments of the Black Sea. Geochimica et Cosmochimica Acta, 68(9), 2081-2093.
Besenbacher, S., Mailund, T., Westh-Nielsen, L. & Pedersen, C. S. (2004). RBT -- A tool for building refined Buneman trees. Bioinformatics, doi:10.1093/bti195, in press.
Herold, S., Fago, A., Weber, R. E., Dewilde, S. & Moens, L. (2004). Reactivity studies of the Fe(III) and Fe(II)NO forms of human neuroglobin reveal a potential role against oxidative stress. Journal of Biological Chemistry, 279(22), 22841-22847.
Campbell, K. L., Bonaventura, J. & Weber, R. E. (2004). Recent evolution of a novel low oxygen-affinity, low erythrocytic cofactor sensitivity hemoglobin in the fossorial Eastern mole (Scalopus aquaticus). Paper presented at Canadian Society of Zoologists meeting in Nova Scotia 11-15 May.
Olesen, B., Marba, N., Duarte, C. M., Savela, C. M. & Fortes, M. D. (2004). Recolonization dynamics in a mixed seagrass meadow: the role of clonal versus sexual processes. Estuaries and Coasts, 27(5), 770-780.
Thorbek, P. & Bilde, T. (2004). Reduced numbers of generalist arthropod predators after crop management. Journal of Applied Ecology, 41, 526-538.
Collie, J. S., Richardson, K. & Steele, J. H. (2004). Regime shifts: can ecological theory illuminate the mechanisms? Progress in Oceanography, 60, 281-302.
Birkedal, R. & Gesser, H. (2004). Regulation of mitochondrial energy production in cardiac cells of rainbow trout (Oncorhynchus mykiss). Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 174, 255-262.