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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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KUENEN, JG., JØRGENSEN, BB. & REVSBECH, NP. (1986). Oxygen Microprofiles of Trickling Filter Biofilms. Water Research, 20(12), 1589-1598.

KUHL, M., COHEN, Y., DALSGAARD, T., JØRGENSEN, BB. & REVSBECH, NP. (1995). Microenvironment and Photosynthesis of Zooxanthellae in Scleractinian Corals Studied with Microsensors for O-2, Ph and Light Rid A-1977-2009 Rid B-5428-2008. Marine Ecology Progress Series, 117(1-3), 159-172.

KUHL, M. & JØRGENSEN, BB. (1994). The Light-Field of Microbenthic Communities - Radiance Distribution and Microscale Optics of Sandy Coastal Sediments Rid A-1977-2009. Limnology and Oceanography, 39(6), 1368-1398.

KUHL, M. & JØRGENSEN, BB. (1992). Spectral Light Measurements in Microbenthic Phototrophic Communities with a Fiberoptic Microprobe Coupled to a Sensitive Diode-Array Detector Rid A-1977-2009. Limnology and Oceanography, 37(8), 1813-1823.

KUHL, M. & JØRGENSEN, BB. (1992). Microsensor Measurements of Sulfate Reduction and Sulfide Oxidation in Compact Microbial Communities of Aerobic Biofilms Rid A-1977-2009. Applied and Environmental Microbiology, 58(4), 1164-1174.

KUHL, M., LASSEN, C. & JØRGENSEN, BB. (1994). Light Penetration and Light-Intensity in Sandy Marine-Sediments Measured with Irradiance and Scalar Irradiance Fiberoptic Microprobes Rid A-1977-2009. Marine Ecology Progress Series, 105(1-2), 139-148.

Kuypers, MMM., Lavik, G., Woebken, D., Schmid, M., Fuchs, BM., Amann, R., Jørgensen, BB. & Jetten, MSM. (2005). Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation RID B-8834-2011. Proceedings of the National Academy of Sciences (PNAS), 102(18), 6478-6483.

Kuypers, MMM., Sliekers, AO., Lavik, G., Schmid, M., Jørgensen, BB., Kuenen, JG., Damste, JSS., Strous, M. & Jetten, MSM. (2003). Anaerobic ammonium oxidation by anammox bacteria in the Black Sea RID B-8834-2011. Nature, 422(6932), 608-611.

LASSEN, C., BEBOUT, LE., PAERL, HW. & JØRGENSEN, BB. (1994). Microsensor Studies of Oxygen and Light-Distribution in the Green Macroalga Codium Fragile. Journal of Phycology, 30(3), 381-386.

LASSEN, C. & JØRGENSEN, BB. (1994). A Fiberoptic Irradiance Microsensor (Cosine Collector) - Application for In-Situ Measurements of Absorption-Coefficients in Sediments and Microbial Mats. FEMS Microbiology Ecology, 15(3-4), 321-336.

LASSEN, C., PLOUG, H. & JØRGENSEN, BB. (1992). Microalgal Photosynthesis and Spectral Scalar Irradiance in Coastal Marine-Sediments of Limfjorden, Denmark. Limnology and Oceanography, 37(4), 760-772.

LASSEN, C., PLOUG, H. & JØRGENSEN, BB. (1992). A Fiberoptic Scalar Irradiance Microsensor - Application for Spectral Light Measurements in Sediments. FEMS Microbiology Ecology, 86(3), 247-254.

Leloup, J., Loy, A., Knab, N. J., Borowski, C., Wagner, M. & Jørgensen, B. B. (2007). Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea RID A-8182-2008. Environmental Microbiology, 9(1), 131-142.

Michaelis, W., Seifert, R., Nauhaus, K., Treude, T., Thiel, V., Blumenberg, M., Knittel, K., Gieseke, A., Peterknecht, K., Pape, T., Boetius, A., Amann, R., Jørgensen, BB., Widdel, F., Peckmann, J., Pimenov, NV. & Gulin, MB. (2002). Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane. Science, 297(5583), 1013-1015.

MOESLUND, L., THAMDRUP, B. & JØRGENSEN, BB. (1994). Sulfur and Iron Cycling in a Coastal Sediment - Radiotracer Studies and Seasonal Dynamics. Biogeochemistry, 27(2), 129-152.

MOLLER, MM., NIELSEN, LP. & JØRGENSEN, BB. (1985). Oxygen Responses and Mat Formation by Beggiatoa Spp. Applied and Environmental Microbiology, 50(2), 373-382.

Mussmann, M., Schulz, HN., Strotmann, B., Kjaer, T., Nielsen, LP., Rossello-Mora, RA., Amann, RI. & Jørgensen, BB. (2003). Phylogeny and distribution of nitrate-storing Beggiatoa spp. in coastal marine sediments. Environmental Microbiology, 5(6), 523-533.

NELSON, DC., JØRGENSEN, BB. & REVSBECH, NP. (1986). Growth-Pattern and Yield of a Chemoautotrophic Beggiatoa Sp in Oxygen-Sulfide Microgradients. Applied and Environmental Microbiology, 52(2), 225-233.

NELSON, DC., REVSBECH, NP. & JØRGENSEN, BB. (1986). Microoxic-Anoxic Niche of Beggiatoa Spp - Microelectrode Survey of Marine and Fresh-Water Strains. Applied and Environmental Microbiology, 52(1), 161-168.

Neretin, LN., Bottcher, ME., Jørgensen, BB., Volkov, II., Luschen, H. & Hilgenfeldt, K. (2004). Pyritization processes and greigite formation in the advancing sulfidization front in the Upper Pleistocene sediments of the Black Sea. Geochimica et Cosmochimica Acta, 68(9), 2081-2093.

Neretin, LN., Schippers, A., Pernthaler, A., Hamann, K., Amann, R. & Jørgensen, BB. (2003). Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR. Environmental Microbiology, 5(8), 660-671.

Otte, S., Kuenen, JG., Nielsen, LP., Paerl, HW., Zopfi, J., Schulz, HN., Teske, A., Strotmann, B., Gallardo, VA. & Jørgensen, BB. (1999). Nitrogen, carbon, and sulfur metabolism in natural Thioploca samples. Applied and Environmental Microbiology, 65(7), 3148-3157.

Parkes, RJ., Webster, G., Cragg, BA., Weightman, AJ., Newberry, CJ., Ferdelman, TG., Kallmeyer, J., Jørgensen, BB., Aiello, IW. & Fry, JC. (2005). Deep sub-seafloor prokaryotes stimulated at interfaces over geological time RID B-1731-2010 RID A-1877-2008 RID D-2690-2009 RID A-2970-2010. Nature, 436(7049), 390-394.

Ploug, H., Grossart, HP., Azam, F. & Jørgensen, BB. (1999). Photosynthesis, respiration, and carbon turnover in sinking marine snow from surface waters of Southern California Bight: implications for the carbon cycle in the ocean. Marine Ecology Progress Series, 179, 1-11.

Ploug, H. & Jørgensen, BB. (1999). A net-jet flow system for mass transfer and microsensor studies of sinking aggregates. Marine Ecology Progress Series, 176, 279-290.

Ploug, H., Kuhl, M., BuchholzCleven, B. & Jørgensen, BB. (1997). Anoxic aggregates - an ephemeral phenomenon in the pelagic environment? RID A-1977-2009. Aquatic Microbial Ecology, 13(3), 285-294.

PLOUG, H., LASSEN, C. & JØRGENSEN, BB. (1993). Action Spectra of Microalgal Photosynthesis and Depth Distribution of Spectral Scalar Irradiance in a Coastal Marine Sediment of Limfjorden, Denmark. FEMS Microbiology Ecology, 12(2), 69-78.

Ploug, H., Stolte, W., Epping, EHG. & Jørgensen, BB. (1999). Diffusive boundary layers, photosynthesis, and respiration of the colony-forming plankton algae, Phaeocystis sp. Limnology and Oceanography, 44(8), 1949-1958.

Ploug, H., Stolte, W. & Jørgensen, BB. (1999). Diffusive boundary layers of the colony-forming plankton alga Phaeocystis sp - implications for nutrient uptake and cellular growth. Limnology and Oceanography, 44(8), 1959-1967.

RAMSING, NB., KUHL, M. & JØRGENSEN, BB. (1993). Distribution of Sulfate-Reducing Bacteria, O2, and H2s in Photosynthetic Biofilms Determined by Oligonucleotide Probes and Microelectrodes Rid A-1977-2009. Applied and Environmental Microbiology, 59(11), 3840-3849.

RASMUSSEN, H. & JØRGENSEN, BB. (1992). Microelectrode Studies of Seasonal Oxygen-Uptake in a Coastal Sediment - Role of Molecular-Diffusion. Marine Ecology Progress Series, 81(3), 289-303.

Ravenschlag, K., Sahm, K., Knoblauch, C., Jørgensen, BB. & Amann, R. (2000). Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine Arctic sediments. Applied and Environmental Microbiology, 66(8), 3592-3602.

REPETA, DJ., SIMPSON, DJ., JØRGENSEN, BB. & JANNASCH, HW. (1989). Evidence for Anoxygenic Photosynthesis from the Distribution of Bacteriochlorophylls in the Black-Sea. Nature, 342(6245), 69-72.

REVSBECH, NP. & JØRGENSEN, BB. (1986). Microelectrodes - their use in Microbial Ecology. Advances in Microbial Ecology, 9, 293-352.

REVSBECH, NP. & JØRGENSEN, BB. (1983). Photosynthesis of Benthic Microflora Measured with High Spatial-Resolution by the Oxygen Microprofile Method - Capabilities and Limitations of the Method. Limnology and Oceanography, 28(4), 749-756.

REVSBECH, NP., JØRGENSEN, BB. & BLACKBURN, TH. (1980). Oxygen in the Sea Bottom Measured with a Microelectrode. Science, 207(4437), 1355-1356.

REVSBECH, NP., JØRGENSEN, BB., BLACKBURN, TH. & COHEN, Y. (1983). Microelectrode Studies of the Photosynthesis and O-2, H2s, and Ph Profiles of a Microbial Mat. Limnology and Oceanography, 28(6), 1062-1074.

REVSBECH, NP., JØRGENSEN, BB. & BRIX, O. (1981). Primary Production of Microalgae in Sediments Measured by Oxygen Microprofile, H-Co-14(3)-Fixation, and Oxygen-Exchange Methods. Limnology and Oceanography, 26(4), 717-730.

REVSBECH, NP., MADSEN, B. & JØRGENSEN, BB. (1986). Oxygen Production and Consumption in Sediments Determined at High Spatial-Resolution by Computer-Simulation of Oxygen Microelectrode Data. Limnology and Oceanography, 31(2), 293-304.

Sahm, K., MacGregor, BJ., Jørgensen, BB. & Stahl, DA. (1999). Sulphate reduction and vertical distribution of sulphate-reducing bacteria quantified by rRNA slot-blot hybridization in a coastal marine sediment. Environmental Microbiology, 1(1), 65-74.

SANDJENSEN, K., REVSBECH, NP. & JØRGENSEN, BB. (1985). Microprofiles of Oxygen in Epiphyte Communities on Submerged Macrophytes. Marine Biology, 89(1), 55-62.

Schippers, A. & Jørgensen, BB. (2002). Biogeochemistry of pyrite and iron sulfide oxidation in marine sediments. Geochimica et Cosmochimica Acta, 66(1), 85-92.

Schippers, A. & Jørgensen, BB. (2001). Oxidation of pyrite and iron sulfide by manganese dioxide in marine sediments. Geochimica et Cosmochimica Acta, 65(6), 915-922.

Schulz, HN., Brinkhoff, T., Ferdelman, TG., Marine, MH., Teske, A. & Jørgensen, BB. (1999). Dense populations of a giant sulfur bacterium in Namibian shelf sediments. Science, 284(5413), 493-495.

Schulz, HN. & Jørgensen, BB. (2001). Big bacteria. Annual Review of Microbiology, 55, 105-137.

Schulz, HN., Jørgensen, BB., Fossing, HA. & Ramsing, NB. (1996). Community structure of filamentous, sheath-building sulfur bacteria, Thioploca spp, off the coast of Chile. Applied and Environmental Microbiology, 62(6), 1855-1862.

Schulz, HN., Strotmann, B., Gallardo, VA. & Jørgensen, BB. (2000). Population study of the filamentous sulfur bacteria Thioploca spp. off the Bay of Concepcion, Chile. Marine Ecology Progress Series, 200, 117-126.

SORENSEN, J., CHRISTENSEN, D. & JØRGENSEN, BB. (1981). Volatile Fatty-Acids and Hydrogen as Substrates for Sulfate-Reducing Bacteria in Anaerobic Marine Sediment. Applied and Environmental Microbiology, 42(1), 5-11.

SORENSEN, J. & JØRGENSEN, BB. (1987). Early Diagenesis in Sediments from Danish Coastal Waters - Microbial Activity and Mn-Fe-S Geochemistry. Geochimica et Cosmochimica Acta, 51(6), 1583-1590.

SORENSEN, J., JØRGENSEN, BB. & REVSBECH, NP. (1979). Comparison of Oxygen, Nitrate, and Sulfate Respiration in Coastal Marine-Sediments. Microbial Ecology, 5(2), 105-115.

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Anne Kirstine Mehlsen