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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Holm, H. & Jørgensen, P. (2024). A Brief Introduction to the Q-Shaped Derived Category. In P. A. Bergh, Ø. Solberg & S. Oppermann (Eds.), Triangulated Categories in Representation Theory and Beyond: The Abel Symposium 2022 (pp. 141-167). Springer. https://doi.org/10.1007/978-3-031-57789-5_5

Jensen, A. N. (2024). Dynamic Decomposition of Tropical Prevarieties for Celestial Mechanics. Lecture Notes in Computer Science, 313-321. https://doi.org/10.1007/978-3-031-64529-7_34

Caragiannis, I., Filos-Ratsikas, A., Nath, S. & Voudouris, A. (2024). Truthful ownership transfer with expert advice. Mathematical Programming, 203(1-2), 871-900. https://doi.org/10.1007/s10107-022-01834-3

Caragiannis, I. & Rathi, N. (2024). Optimizing Over Serial Dictatorships. Theory of Computing Systems, 68(5), 1180-1206. https://doi.org/10.1007/s00224-024-10196-6

Segelund, E. B., Kristensen, M. D., Holste, S., Lundby, J. M. B. & Pedersen, L. (2024). Inorganic phosphate transporter PiT2 and phosphate homeostasis. Poster session presented at 20th Annual Vienna BioCenter PhD Program Symposium , Vienna, Austria.

Caragiannis, I., Micha, E. & Peters, J. (2024). Can a Few Decide for Many? The Metric Distortion of Sortition. In R. Salakhutdinov, Z. Kolter & K. Heller (Eds.), Proceedings of the 41st International Conference on Machine Learning (ICML) (Vol. 235, pp. 5660-5679). Article 220 JMLR.org.

Caragiannis, I. & Kalantzis, G. (2024). Randomized learning-augmented auctions with revenue guarantees. In K. Larson (Ed.), Proceedings of the 33rd International Joint Conference on Artificial Intelligence (IJCAI) (pp. 2687-2694). International Joint Conferences on Artificial Intelligence.

Segelund, E. B., Kristensen, M. D., Holste, S., Lundby, J. M. B. & Pedersen, L. (2024). Inorganic phosphate transporter PiT2 and phosphate homeostasis. Abstract from 20th Annual Vienna BioCenter PhD Program Symposium , Vienna, Austria.

Birch, T., Horsnæs, H., Andreasen, R., Feveile, C., Merkel, S., Kershaw, J., Naismith, R. & Moesgaard, J. C. (2024). The Damhus Hoard: new insights into some of the earliest Viking silver coinage. 46-47. Abstract from Archaeometallurgy in Europe 2024, Falun, Sweden.

Andreasen, R., Birch, T., Jensen, R. B., Jensen, M. L., Taube, M. & Grane, T. (2024). Materialising Roman Diplomacy: a Pb isotope study of Eggers 92 bronze basins in Denmark – A link to Tiberius’s naval expedition to the North in 5 AD?. 88-88. Abstract from Archaeometallurgy in Europe 2024, Falun, Sweden.

Urhøj Møller, K., Andreasen, R. & Birch, T. (2024). A Novel Approach to Differentiate Icelandic Iron Production Slags from other Viking Sources Combining Sr Isotopes and Trace Elements. 235-236. Abstract from Archaeometallurgy in Europe 2024, Falun, Sweden.

Ali, S. D., Rasmussen, M. H., Catalano, J., Frederiksen, C. H. & Weidner, T. (2025). Bioinspired nanofilament coatings for scale reduction on steel. Beilstein Journal of Nanotechnology, 16, 25-34. https://doi.org/10.3762/BJNANO.16.3

Davies, L. R., Kristensen, T. N., Sørensen, J. G., Loeschcke, V. & Schou, M. F. (2025). Nutritional stress in larvae induces adaptive responses that transcend generations in males of a model insect. The Journal of experimental biology, 228(2), Article jeb247972. https://doi.org/10.1242/jeb.247972

McLachlan, P., Zamora Luria, J. C., Grombacher, D. & Christiansen, A. V. (2024). Assessing groundwater-surface water connectivity using land and waterborne TEM surveys. In 30th European Meeting of Environmental and Engineering Geophysics, Held at the Near Surface Geoscience Conference and Exhibition 2024, NSG 2024 European Association of Geoscientists and Engineers. https://doi.org/10.3997/2214-4609.202420155

Maurya, P., Auken, E., Christiansen, A. V., Grombacher, D. J., McLachlan, P. J., Harbo, A. L. C., Jensen, S. & Naundrup, J. J. (2024). A new semi-airborne loop source TEM system for 3D mapping of groundwater and mineral resources. In 4th Conference on Airborne, Drone and Robotic Geophysics European Association of Geoscientists and Engineers. https://doi.org/10.3997/2214-4609.202420105

Almpanis, A., Christiansen, A. V., McLachlan, P. & Grombacher, D. (2024). Comparing inductive and galvanic sources in semi-airborne transient electromagnetic (TEM) method: a parameter analysis. In 4th Conference on Airborne, Drone and Robotic Geophysics European Association of Geoscientists and Engineers. https://doi.org/10.3997/2214-4609.202420104

Zamora-Luria, J. C., Almpanis, A., Grombacher, D. & Christiansen, A. V. (2024). Unveiling environmental dynamics: on the use of time-lapse TEM for remediation assessment. In 30th European Meeting of Environmental and Engineering Geophysics, Held at the Near Surface Geoscience Conference and Exhibition 2024, NSG 2024 European Association of Geoscientists and Engineers, EAGE. https://doi.org/10.3997/2214-4609.202420168

Zhang, L., Bai, J., Shen, A., Zhao, J., Su, Z., Wang, M., Dong, M. & Xu, Z. P. (2025). Artificially tagging tumors with nano-aluminum adjuvant-tethered antigen mRNA recruits and activates antigen-specific cytotoxic T cells for enhanced cancer immunotherapy. Biomaterials, 317, Article 123085. https://doi.org/10.1016/j.biomaterials.2025.123085

Lusk, B. G., Morgan, S., Mulvaney, S. P., Blue, B., LaGasse, S. W., Cress, C. D., Bjerg, J. J., Lee, W. K., Eddie, B. J. & Robinson, J. T. (2025). Hydrated cable bacteria exhibit protonic conductivity over long distances. Proceedings of the National Academy of Sciences (PNAS), 122(4), Article e2416008122. https://doi.org/10.1073/pnas.2416008122

Tommasel, A. & Assent, I. (2024). Semantic grounding of LLMs using knowledge graphs for query reformulation in medical information retrieval. In W. Ding, C.-T. Lu, F. Wang, L. Di, K. Wu, J. Huan, R. Nambiar, J. Li, F. Ilievski, R. Baeza-Yates & X. Hu (Eds.), 2024 IEEE International Conference on Big Data (BigData) (pp. 4048-4057). IEEE. https://doi.org/10.1109/BigData62323.2024.10826117, https://doi.org/10.1109/BigData62323.2024.10826117

Tran, H. V., Zhang, Z., Pham, T. D., Doan, N. P., Hoang, A.-T., Li, P., Vandierendonck, H., Assent, I. & Mai, T. S. (2025). InteDisUX: intepretation-guided discriminative user-centric explanation for time series. Proceedings of the AAAI Conference on Artificial Intelligence, 39(20), 20921-20928. https://doi.org/10.1609/aaai.v39i20.35387

Beer, A., Palotás, O., Maldonado, A., Draganov, A. & Assent, I. (2024). DROPP: Structure-Aware PCA for Ordered Data: A General Method and its Applications in Climate Research and Molecular Dynamics. In 2024 IEEE 40th International Conference on Data Engineering (ICDE) (pp. 1143-1156). IEEE. https://doi.org/10.1109/ICDE60146.2024.00093

Borowski, M., Butcher, P. W. S., Kristensen, J. B., Petersen, J. O., Ritsos, P. D., Klokmose, C. N. & Elmqvist, N. (2025). DashSpace: A Live Collaborative Platform for Immersive and Ubiquitous Analytics. IEEE Transactions on Visualization and Computer Graphics. Advance online publication. https://doi.org/10.1109/TVCG.2025.3537679

Hoffmann, S. V., Jones, N. C. & Rodger, A. (2025). Protein secondary structure determined from independent and integrated infra-red absorbance and circular dichroism data using the algorithm SELCON. QRB Discovery, 6, Article e10. https://doi.org/10.1017/qrd.2025.4

Wagner, U., Jacobsen, A. A., Feuchtner, T., Gellersen, H. & Pfeuffer, K. (2024). Eye-Hand Movement of Objects in Near Space Extended Reality. In UIST 2024 - Proceedings of the 37th Annual ACM Symposium on User Interface Software and Technology Article 84 Association for Computing Machinery, Inc.. https://doi.org/10.1145/3654777.3676446

Goel, A., Hall-Andersen, M. & Kaptchuk, G. (2024). Dora: A Simple Approach to Zero-Knowledge for RAM Programs. In CCS 2024 - Proceedings of the 2024 ACM SIGSAC Conference on Computer and Communications Security (pp. 869-883). Association for Computing Machinery. https://doi.org/10.1145/3658644.3690213

Kidmose, J., Jessen, S., Sandersen, P. B. E., Nilsson, B., Koch, J., Thorling, L., Pedersen, J. B., Christiansen, A. V. & Møller, I. (2025). Remote sensing of preferential groundwater discharge with high-resolution geophysical measurements of FloaTEM and tTEM compared with lake surface temperature anomalies. Journal of Hydrology, 652, Article 132523. https://doi.org/10.1016/j.jhydrol.2024.132523

Mashhadi, S. R., Grombacher, D., Pedersen, J. B., Jørgensen, F., Andersen, T. R. & Griffiths, M. P. (2024). Estimation of hydraulic conductivity variations within glacial sediments at Endelave island by borehole NMR data. In 30th European Meeting of Environmental and Engineering Geophysics, Held at the Near Surface Geoscience Conference and Exhibition 2024, NSG 2024 European Association of Geoscientists and Engineers, EAGE. https://doi.org/10.3997/2214-4609.202420047

Trolle, G. B., Kubecka, J. & Elm, J. (2025). Modeling Local Aerosol Surface Environments: Clustering of Pyruvic Acid Analogs, Water, and Na+, Cl^_ Ions. ACS Omega, 10(1), 1470–1485. https://doi.org/10.1021/acsomega.4c09196

Gerlich, H. S., Holmstrup, M., Schmidt, N. M. & Høye, T. T. (2025). Phenological responses to climate change across taxa and local habitats in a high-Arctic arthropod community. Ecological Monographs, 95(1), Article e1643. https://doi.org/10.1002/ecm.1643

Ejaz, U., Khan, S. M., Shah, S. F. A., Khalid, N., Jehangir, S., Rizvi, Z. F. & Svenning, J. C. (2025). Integrative data-driven analytics for assessing ecological and human health risks of soil heavy metal contamination. Journal of Hazardous Materials Advances, 17, Article 100596. https://doi.org/10.1016/j.hazadv.2025.100596

Tougaard, J., Beedholm, K. & Madsen, P. T. (2025). Comment on "Similar susceptibility to temporary hearing threshold shifts despite different audiograms in harbor porpoises and harbor seals" [J. Acoust. Soc. Am. 155, 396-404 (2024)] (L). The Journal of the Acoustical Society of America, 157(1), 538-541. https://doi.org/10.1121/10.0035452

Carrer, M., Dibona, R., Frigo, D., Gorlanova, L., Hantemirov, R., Unterholzner, L., Normand, S., Treier, U. A. & Prendin, A. L. (2025). Common juniper, the oldest nonclonal woody species across the tundra biome and the European continent. Ecology, 106(1), e4514. Article e4514. https://doi.org/10.1002/ecy.4514

Wüest, R. O., Zimmermann, N. E., Zurell, D., Alexander, J. M., Fritz, S. A., Hof, C., Kreft, H., Normand, S., Cabral, J. S., Szekely, E., Thuiller, W., Wikelski, M. & Karger, D. N. (2020). Macroecology in the age of Big Data – Where to go from here? Journal of Biogeography, 47(1), 1-12. https://doi.org/10.1111/jbi.13633

Shahrokhtash, A., Sivertsen, M. V. T., Laursen, S. H. & Sutherland, D. S. (2025). Nanoscale Cellular Traction Force Quantification: CRISPR-Cas12a Supercharged DNA Tension Sensors in Nanoclustered Ligand Patterns. ACS applied materials & interfaces, 17(5), 7339-7352. https://doi.org/10.1021/acsami.4c18358

Foldager, L. (2025). FAIR data and Open Science: some insights from a work package in the PIGWEB project. In P. Linde (Ed.), Symposium i Anvendt Statistik 2025 (pp. 49-54). Økonomisk Institut og Klinisk Institut, Syddansk Universitet & Symposium i Anvendt Statistik. http://www.statistiksymposium.dk/Symposium%202025%20hele%20bogen%20(10%20MB).pdf

Wittig, N. K., Pedersen, C., Palle, J., Østergaard, M., Christensen, T. E. K., Kahnt, M., Sadetskaia, A., Thomsen, J. S., Brüel, A. & Birkedal, H. (2024). Protocols for preparation of biomineralized samples for computed tomography. Tomography of Materials and Structures, 5, Article 100027. https://doi.org/10.1016/j.tmater.2024.100027

Twiller, J. W., Andersen, K. & Sivertsen, A. (2024). An efficient integer programming model for solving the master planning problem of container vessel stowage. In A. Garrido, C. D. Paternina-Arboleda & S. Voß (Eds.), Computational Logistics - 15th International Conference, ICCL 2024, Proceedings (Vol. 15168, pp. 236-253). Springer. https://doi.org/10.1007/978-3-031-71993-6_16

Iversen, O. S., Caspersen, M. E. & Petersen, M. G. (2025). Professorer: Fire spørgsmål er afgørende i fagudviklingen af teknologiforståelse. Skolemonitor. https://skolemonitor.dk/debat/art10264270/Fire-spørgsmål-er-afgørende-i-fagudviklingen-af-teknologiforståelse

Marzookian, K., Aliakbari, F., Hourfar, H., Sabouni, F., Otzen, D. E. & Morshedi, D. (2025). The neuroprotective effect of human umbilical cord MSCs-derived secretome against α-synuclein aggregates on the blood-brain barrier. International Journal of Biological Macromolecules, 304(Part 1), Article 140387. https://doi.org/10.1016/j.ijbiomac.2025.140387

Mikkelsen, J. E. S. & Jensen, F. (2025). Minimal Basis Iterative Stockholder Decomposition with Multipole Constraints. Journal of Chemical Theory and Computation, 21(3), 1179-1193. https://doi.org/10.1021/acs.jctc.4c01297

Paulsen, T. T., Kiib, A. E., Wørmer, G. J., Hacker, S. M. & Poulsen, T. B. (2025). Total syntheses of cyclohelminthol I-IV reveal a new cysteine-selective covalent reactive group. Chemical Science, 16(9), 3916-3927. https://doi.org/10.1039/d4sc08667h

Brinch, M., Philippsen, B., Groβ, D. & Kanstrup, M. (2024). Stone-Paved Cellars in the Stone Age? Archaeological Evidence for A Neolithic Subterranean Construction from Nygårdsvej 3, Falster, Denmark. Radiocarbon, 66(6), 1518-1542. https://doi.org/10.1017/RDC.2024.79

Baudoin, F., Gordina, M., Herzog, D. P., Kim, J. & Melcher, T. (2025). Functional inequalities for a family of infinite-dimensional diffusions with degenerate noise. Journal of Functional Analysis, 288(6), Article 110814. https://doi.org/10.1016/j.jfa.2024.110814

Jespersen, E. A., Dybdahl, A.-K., Jensen, J. S., Laustsen, A. & Arias, C. A. (2024). Pollutant Removal in Bioswales. Abstract from 18th Annual DWF Water Research Conference, Copenhagen, Denmark.

Wipf, S., Mabey, P., Urso, R. G., Wolf, S., Stok, A., Ricco, A. J., Quinn, R. C., Mattioda, A. L., Jones, N. C., Hoffmann, S. V., Cottin, H., Chaput, D., Ehrenfreund, P. & Elsaesser, A. (2025). Photochemical Evolution of Alanine in Association with the Martian Soil Analog Montmorillonite: Insights Derived from Experiments Conducted on the International Space Station. Astrobiology, 25(2), 97-114. https://doi.org/10.1089/ast.2024.0034

Jorgensen, C., Linville, R. M., Galea, I., Lambden, E., Vögele, M., Chen, C., Troendle, E. P., Ruggiu, F., Ulmschneider, M. B., Schiøtt, B. & Lorenz, C. D. (2025). Permeability Benchmarking: Guidelines for Comparing in Silico, in Vitro, and in Vivo Measurements. Journal of Chemical Information and Modeling, 65(3), 1067-1084. https://doi.org/10.1021/acs.jcim.4c01815

The ATLAS collaboration (2021). Jet energy scale and resolution measured in proton–proton collisions at √s=13 TeV with the ATLAS detector. The European Physical Journal C: Particles and Fields, 81(8), Article 689. https://doi.org/10.1140/epjc/s10052-021-09402-3

The ATLAS collaboration & Poulsen, T. (2020). Search for tt¯ resonances in fully hadronic final states in pp collisions at √s = 13 TeV with the ATLAS detector. Journal of High Energy Physics, 2020(10), Article 61. https://doi.org/10.1007/JHEP10(2020)061

Carvalho, J. P., Goodwin, D. L., Wili, N., Nielsen, A. B. & Nielsen, N. C. (2025). Optimal control design strategies for pulsed dynamic nuclear polarization. The Journal of Chemical Physics, 162(5), Article 054111. https://doi.org/10.1063/5.0244723

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Anne Kirstine Mehlsen