Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Huettel, M., Røy, H., Precht, E. & Ehrenhauss, S. (2003). Hydrodynamical impact on biogeochemical processes in aquatic sediments. Hydrobiologia, 494(1-3), 231-236.

Glud, RN., Gundersen, JK., Røy, H. & Jørgensen, BB. (2003). Seasonal dynamics of benthic O-2 uptake in a semienclosed bay: Importance of diffusion and faunal activity. Limnology and Oceanography, 48(3), 1265-1276.

Røy, H., huettel, M. & Jørgensen, BB. (2002). The role of small-scale sediment topography for oxygen flux across the diffusive boundary layer. Limnology and Oceanography, 47(3), 837-847.

Østerby, O. (1987). Estimation of Reaction Parameters in Gas Chromatograhy. In Proceedings of the Symposium on Applied Statistics. UNI-C (pp. 369-378)

Schmitz, T., Blaickner, M., Ziegner, M., Bassler, N., Grunewald, C., Kratz, J.-V., Schütz, C., Langguth, P., Sharpe, P., Palmans, H., Holzscheiter, M. H., Otto, G. & Hampel, G. (2011). Dose Determination using alanine detectors in a Mixed Neutron and Gamma Field for Boron Neutron Capture Therapy of Liver Malignancies. Acta Oncologica, 50(6), 817-822. https://doi.org/10.3109/0284186X.2011.582516

Kaiser, F.-J., Tölli, H., Bassler, N. & Jäkel, O. (2011). Initial Recombination in Air Filled Ionization Chambers. Poster session presented at ACTA Oncologica Symposium on Particle Therapy, Uppsala, Denmark.

Kaiser, F.-J., Bassler, N. & Jäkel, O. (2011). Silicon diodes as radiation detectors in carbon ion beams. Poster session presented at ACTA Oncologica Symposium on Particle Therapy, Uppsala, Denmark.

Jørgensen, P., Olsen, J., Helgaker, T. & Klopper, W. (2004). Wave Function-Based Quantum Chemistry. In P. Bultinck, H. de Winter, W. Langenaeker & J. P. Tollenaere (Eds.), Computational Medicinal Chemistry for Drug Discovery (pp. 57-88). Marcel Decker Inc.

Høst, S., Olsen, J., Jansik, B., Jørgensen, P., Reine, S., Helgaker, T., Salek, P. & Coriani, S. (2007). Towards Black-box Linear Scaling Optimization in Hartree-Fock and Kohn-Sham Theories. Lecture Series on Computer and Computational Sciences, 6, 177-189.

Coriani, S., Thorvaldsen, A. J., Kristensen, K. & Jørgensen, P. (2011). Variational Response-function Formulation of Vibrational Circular Dichroism. Physical Chemistry Chemical Physics, 13, 4224-4229. https://doi.org/10.1039/C0CP02230F

Scholz, J. C. & Greiner, M. (2011). Self-organizing weights for Internet AS-graphs and surprisingly simple routing metrics. EPL, 94(2), 28008: p1-p6. https://doi.org/10.1209/0295-5075/94/28008

Andersen, J., Koch-Jensen, P. & Østerby, O. (1993). Corneal topography: Photokeratoscopy including the central region. Acta Ophthamologica (Online), 71(2), 145-150. https://doi.org/10.1111/j.1755-3768.1993.tb04980.x

Andersen, J., Koch-Jensen, P. & Østerby, O. (1993). Corneal topography: Image processing and numerical analysis of keratoscopy. Acta Ophthamologica (Online), 71(2), 151-159. https://doi.org/10.1111/j.1755-3768.1993.tb04981.x

Østerby, O. (1993). Stability of finite difference formulas for linear parabolic equations. In D. D. Bainov & V. Covachev (Eds.), Proceedings of the Second International Colloquium on Numerical Analysis (pp. 165-176)

Britz, D. & Østerby, O. (1994). Some Numerical Investigations of the Stability of Electrochemical Digital Simulation, Particularly as affected by First-Order Homogeneous Reactions. Journal of Electroanalytical Chemistry, 368(1-2), 143-147. https://doi.org/10.1016/0022-0728(93)03085-4

Bieniasz, L. K., Østerby, O. & Britz, D. (1995). Numerical stability of finite difference algorithms for electrochemical kinetic simulations. Matrix stability analysis of the classic explicit, fully implicit and Crank-Nicolson methods, extended to the 3- and 4-point gradient approximation at the electrodes. Computers and Chemistry, 19(4), 351-355. https://doi.org/10.1016/0097-8485(95)00056-X

Bieniasz, L. K., Østerby, O. & Britz, D. (1995). Numerical stability of finite difference algorithms for electrochemical kinetic simulations: Matrix stability analysis of the classic explicit, fully implicit and Crank-Nicolson methods and typical problems involving mixed boundary conditions. Computers and Chemistry, 19(2), 121-136. https://doi.org/10.1016/0097-8485(94)00054-I

Bieniasz, L. K., Østerby, O. & Britz, D. (1995). Numerical stability of the Saul'yev finite difference algorithms for electrochemical kinetic simulations: Matrix stability analysis for an example problem involving mixed boundary conditions. Computers and Chemistry, 19(4), 357-370. https://doi.org/10.1016/0097-8485(95)00047-V

Bieniasz, L. K., Østerby, O. & Britz, D. (1997). The effect of the discretization of the mixed boundary conditions on the numerical stability of the Crank-Nicolson algorithm of electrochemical kinetic simulations. Computers and Chemistry, 21(6), 391-401. https://doi.org/10.1016/S0097-8485(97)00033-8

Britz, D., Østerby, O. & Strutwolf, J. (2003). Damping of Crank–Nicolson error oscillations. Computational Biology and Chemistry, 27(3), 253-263. https://doi.org/10.1016/S0097-8485(02)00075-X

Østerby, O. (1998). The Error of the Crank-Nicolson Method for Linear Parabolic Equations with a Derivative Boundary Condition. Department of Computer Science, Aarhus University. DAIMI PB No. 534

Østerby, O. (2003). Five ways of reducing the Crank-Nicolson oscillations. BIT Numerical Mathematics, 43(4), 811-822. https://doi.org/10.1023/B:BITN.0000009942.00540.94

Kaiser, F.-J., Tölli, H., Bassler, N. & Jäkel, O. (2011). Initial recombination in the track of heavy charged particles. Poster session presented at phd day 2011, aarhus, Denmark.

Sørensen, A. H., Søholm, K. M. & Friedrich, W. L. (2011). Bronzealderens Santorini i antikkens fortællinger. In B. Poulsen & O. Højris (Eds.), Antikkens Verden Aarhus Universitetsforlag. http://unipress.dk/udgivelser/a/antikkens-verden/

Funch, P. (2012). Micrognathozoa. In McGraw Hill Encyclopedia of Science & Technology, 11th Edition (pp. 87-88). McGraw-Hill. http://0-www.accessscience.com.library.hct.ac.ae/abstract.aspx?id=900166&referURL=/content/Micrognathozoa/900166

Na, H., Kim, O.-S., Yoon, S., Kim, Y. & Chun, J. (2011). Comparative approach to capture bacterial diversity in coastal waters. Journal of Microbiology, 49(5), 729-740.

Remmert, V. R. & Oy-Marra, E. (Eds.) (2011). Le monde est une peinture: Jesuitische Identität und die Rolle der Bilder. Akademie Verlag.

Bennedsen, J. B. & Caspersen, M. E. (2005). An Upcoming Study of Potential Success Factors for an Introductory Model-Driven Programming Course. In Proceedings of the 5th Koli Calling Conference on Computer Science Education (pp. 166-169). University of Joensuu.

Caspersen, M. E. (1999). A C++ framework for active objects in embedded real-time systems-bridging the gap between modeling and implementation. In Technology of Object-Oriented Languages and Systems, 1999. TOOLS 32. Proceedings (pp. 52-65). IEEE Computer Society Press. https://doi.org/10.1109/TOOLS.1999.809414

Caspersen, M. E., Madsen, O. L. & Skov, S. H. (2001). Testing Object-Oriented Software. Department of Computer Science, Aarhus University. Centre for Object Technology Technical Report No. COT/2-43-V1.0

Lira, E., Wendt, S., Huo, P., Hansen, J. Ø., Streber, R., Porsgaard, S., Wei, Y., Bechstein, R., Lægsgaard, E. & Besenbacher, F. (2011). The importance of bulk ti(3+) defects in the oxygen chemistry on titania surfaces. Journal of the American Chemical Society, 133(17), 6529-32. https://doi.org/10.1021/ja200884w

Nielsen, T. K., Polanski, M., Zasada, D., Javadian, P., Besenbacher, F., Bystrzycki, J., Skibsted, J. & Jensen, T. R. (2011). Improved Hydrogen Storage Kinetics of Nanoconfined NaAlH₄ Catalyzed with TiCl₃ Nanoparticles. ACS Nano, 5(5), 4056-4064. https://doi.org/10.1021/nn200643b

Pennisi, C. P. A., Dolatshahi-Pirouz, A., Foss, M., Chevallier, J., Fink, T., Zachar, V., Besenbacher, F. & Yoshida, K. (2011). Nanoscale topography reduces fibroblast growth, focal adhesion size and migration-related gene expression on platinum surfaces. Colloids and Surfaces B: Biointerfaces, 85(2), 189-97. https://doi.org/10.1016/j.colsurfb.2011.02.028

Keller, A., Fritzsche, M., Ogaki, R., Bald, I., Facsko, S., Dong, M., Kingshott, P. & Besenbacher, F. (2011). Tuning the hydrophobicity of mica surfaces by hyperthermal Ar ion irradiation. Journal of Chemical Physics, 134(10), 104705. https://doi.org/10.1063/1.3561292

Knudsen, M. M., Kalashnyk, N., Masini, F., Cramer, J. R., Lægsgaard, E., Besenbacher, F., Linderoth, T. R. & Gothelf, K. V. (2011). Controlling chiral organization of molecular rods on au(111) by molecular design. Journal of the American Chemical Society, 133(13), 4896-905. https://doi.org/10.1021/ja110052n

Bald, I., Wang, Y.-G., Dong, M., Rosen, C. B., Ravnsbaek, J. B., Zhuang, G.-L., Gothelf, K. V., Wang, J.-G. & Besenbacher, F. (2011). Control of Self-Assembled 2D Nanostructures by Methylation of Guanine. Small, 7(7), 939-49. https://doi.org/10.1002/smll.201002033

Nielsen, T. K., Besenbacher, F. & Jensen, T. R. (2011). Nanoconfined hydrides for energy storage. Nanoscale, 3(5), 2086-98. https://doi.org/10.1039/c0nr00725k

DeBrabandere, L., Thamdrup, B., Canfield, D., Dalsgaard, T., Revsbech, N. P. & Ulloa, O. (2011). High resolution depth profiles of anammox and denitrification in the OMZ off Chile. Abstract from European Geosciences Union, General Assembly 2011, Wien, Austria.

Kragh, H. (2011). Mathematics, relativity, and quantum wave equations. In K.-H. Schlote & M. Schneider (Eds.), Mathematics Meets Physics: A Contribution to their Interaction in the 19th and the First Half of the 20th Century (pp. 352-371). Verlag Harri Deutsch.

Ingstrup, M. (2003). Interaction Widget. In K. Henney & D. Schütz (Eds.), Proceedings of the 8th European Conference on Pattern Languages of Programs, 2003 UVK Verlagsgesellschaft.

Hansen, K. M. & Ingstrup, M. (2010). Modeling and analyzing architectural change with alloy. In Proceedings of the 2010 ACM Symposium on Applied Computing (pp. 2257-2264). Association for Computing Machinery. https://doi.org/10.1145/1774088.1774560

Kuneš, P., Odgaard, B. V. & Gaillard, M.-J. (2011). Soil phosphorus as a control of productivity and openness in temperate interglacial forest ecosystems. Journal of Biogeography, 38(11), 2150-2164. https://doi.org/10.1111/j.1365-2699.2011.02557.x

Heytens, E., Schmitt-John, T., Moser, J. M., Jensen, N. M., Soleimani, R., Young, C., Coward, K., Parrington, J. & De Sutter, P. (2010). Reduced fertilization after ICSI and abnormal phosphilipase C zeta presence in spermatozoa from the wobbler mouse. Reproductive BioMedicine Online, 21, 742-749.

Nieto-Gonzalez, J. L., Moser, J. M., Lauritzen, M., Schmitt-John, T. & Jensen, K. (2011). Reduced GABAergic inhibition explains cortical hyperexcitability in the wobbler mouse model of ALS. Cerebral Cortex, 21, 625-635.

Palmisano, R., Golfi, P., Heimann, P., Shaw, C., Troakes, C., Schmitt-John, T. & Bartsch, J. W. (2011). Endosomal accumulation of APP in wobbler motor neurons reflects impaired vesicle trafficking: Implications for human motor neuron disease. B M C Neuroscience, 12, 24.

Majumder, U., Rangnekar, A., Gothelf, K. V., Reif, J. H. & LaBean, T. H. (2011). Design and construction of double-decker tile as a route to three-dimensional periodic assembly of DNA. Journal of the American Chemical Society, 133(11), 3843-5. https://doi.org/10.1021/ja1108886

Rangnekar, A., Gothelf, K. V. & Labean, T. H. (2011). Design and synthesis of DNA four-helix bundles. Nanotechnology, 22(23), 235601. https://doi.org/10.1088/0957-4484/22/23/235601

Wehrmann, L. M., Risgaard-Petersen, N., Schrum, H., Walsh, E. A., Huh, Y., Ikehara, M., Pierre, C., D’Hondt, S., Ferdelman, T. G., Ravelo, A. C., Takahashi, K. & Zarikian, C. A. (2011). Coupled organic and inorganic carbon cycling in the deep subseafloor sediment of the northeastern Bering Sea Slope (IODP Exp. 323). Chemical Geology, 284(3-4), 251-261 . https://doi.org/10.1016/j.chemgeo.2011.03.002

Lenoir, J. & Gégout, J.-C. (2010). La remontée de la distribution altitudinale des espèces végétales forestières tempérées en lien avec le réchauffement climatique récent. Revue Forestiere Francaise, 3-4, 465.

Frandsen, G. S. (2000). On the Density of Normal Bases in Finite Fields. Finite Fields and Their Applications, 6(1), 23-38. https://doi.org/10.1006/ffta.1999.0263

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