Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Mahmood, H., Schneider, R., Frederiksen, R. R., Christiansen, A. V. & Stisen, S. (2022). Assessing Physical control of simulated drain flow dynamics. EGU22-6315. Abstract from EGU General Assembly 2022, Vienna, Austria. https://doi.org/10.5194/egusphere-egu22-6315

Schneider, R., Mahmood, H., Frederiksen, R. R., Højbjerg, A. L. & Stisen, S. (2022). Prediction of drain flow fraction at high spatial resolution by combining physically based models and machine learning. EGU22-3694. https://doi.org/10.5194/egusphere-egu22-3694

Olesen, J. L., Ianus, A., Østergaard, L., Shemesh, N. & Jespersen, S. N. (2023). Tensor denoising of multidimensional MRI data. Magnetic Resonance in Medicine, 89(3), 1160-1172. https://doi.org/10.1002/mrm.29478

Tolomeo, D., Traversa, D., Venuto, S., Ebbesen, K., Garcia Rodriguez, J. L., Tamma, G., Ranieri, M., Simonetti, G., Ghetti, M., Paganelli, M., Visci, G., Liso, A., Kok, K., Muscarella, L. A., Fabrizio, F. P., Frassanito, M. A., Lamanuzzi, A., Saltarella, I., Solimando, A. G. ... Storlazzi, C. T. (2023). circPVT1 and PVT1/AKT3 show a role in cell proliferation, apoptosis, and tumor subtype-definition in Small Cell Lung Cancer. Genes, Chromosomes & Cancer, 62(7), 377-391. https://doi.org/10.1002/gcc.23121

Riesgo, A., Santodomingo, N., Koutsouveli, V., Kumala, L., Leger, M. M., Leys, S. P. & Funch, P. (2022). Molecular machineries of ciliogenesis, cell survival, and vasculogenesis are differentially expressed during regeneration in explants of the demosponge Halichondria panicea. BMC Genomics, 23(1), Article 858. https://doi.org/10.1186/s12864-022-09035-0

Wang, T. & Alstrup, A. K. O. (2023). Tilpasset det ekstreme: sollys og døgnrytmer. Kaskelot, 2023(244), 8-11.

Skydsgaard, M. A. (2022). Videnskab er også lidenskab. Danske Museer, (1), 8-11. https://www.danskemuseer.dk/wp-content/uploads/2022/09/DM1-22_NY.pdf

Bomholt Larsen, A. S., Skydsgaard, M. A. & Kirkfeldt, S. S. (2019). Gentest og tandbørster. Hvordan sundhed blev fælles. 2D/3D (psysical products)

Lauridsen, K., Greve, L., Skydsgaard, M. A. & Kirkfeldt, S. S. (2021). Kroppen som data. 2D/3D (psysical products)

Jensen, M. R., Høgslund, S., Knudsen, S. W., Nielsen, J., Møller, P. R., Rysgaard, S. & Thomsen, P. F. (2023). Distinct latitudinal community patterns of Arctic marine vertebrates along the East Greenlandic coast detected by environmental DNA. Diversity and Distributions, 29(2), 316-334. https://doi.org/10.1111/ddi.13665

Mühlfenzl, K. S., Sardana, M., Skrydstrup, T. & Elmore, C. S. (2022). Visible-Light Enabled Late-Stage, Room-Temperature Aminocarbonylation of Aryl Iodides with Labeled Carbon Monoxide. ChemistrySelect, 7(46), Article e202203582. https://doi.org/10.1002/slct.202203582

Jensen, A. B., Kubečka, J., Schmitz, G., Christiansen, O. & Elm, J. (2022). Massive Assessment of the Binding Energies of Atmospheric Molecular Clusters. Journal of Chemical Theory and Computation, 18(12), 7373-7383. https://doi.org/10.1021/acs.jctc.2c00825

Neumann, K. T. & Skrydstrup, T. (2022). Enriched amino acids. Nature Chemistry, 14(12), 1339-1340. https://doi.org/10.1038/s41557-022-01089-7

Skydsgaard, M. A. (2021). Sanitet i et historisk perspektiv. Pictures, Video and sound recordings (digital), Nationalmuseet.

Skydsgaard, M. A. (2021). Epidemier i Steno Museets samlinger. Pictures, Video and sound recordings (digital), Folkeuniversitetet.

Skydsgaard, M. A. (2020). Hvad fejler Dem? Måske det vigtigste spørgsmål i hele sundhedsvæsenet. Pictures, Video and sound recordings (digital), Practicus.

Skydsgaard, M. A. (2019). Sidste tur med blodprøverne. Ugeskrift for Læger, 181(14), 1306-7.

Skydsgaard, M. A. (2019). Blodet cirkulerer. Pictures, Video and sound recordings (digital), Aarhus Universitetsforlag.

Skydsgaard, M. A. (2019). Kokopper og vaccination. Pictures, Video and sound recordings (digital), Aarhus Universitetsforlag.

Skydsgaard, M. A. (2019). Bakterier - et mikroskopisk liv. Pictures, Video and sound recordings (digital), Aarhus Universitetsforlag.

Bechsgaard, J., Jorgensen, T. H., Jønsson, A. K., Schou, M. & Bilde, T. (2022). Impaired immune function accompanies social evolution in spiders. Biology Letters, 18(12), Article 20220331. https://doi.org/10.1098/rsbl.2022.0331

Bethune, J., Kleppe, A. & Besenbacher, S. (2022). A method to build extended sequence context models of point mutations and indels. Nature Communications, 13(1), Article 7884. https://doi.org/10.1038/s41467-022-35596-5

Bandholtz Hansen, S., Sindbæk, S. M., Søvsø, M., Croix, S. & Barfod, G. H. (2022). All under one roof: Chemical and SR Isotope analysis of glass from a viking age pit house at Ribe. In M. Dodt, S. Messal, B. S. Majchczack & A. Kronz (Eds.), Glas als Fernhandelsprodukt im frühen Mittelalter: Köln und der europäische Norden (pp. 103-120). Verlag des Römisch-Germanischen Zentralmuseums. https://doi.org/10.11588/propylaeum.1105

Johnson, A. S., Moreno-Mencía, D., Amuah, E. B., Menghini, M., Locquet, J. P., Giannetti, C., Pastor, E. & Wall, S. E. (2022). Ultrafast Loss of Lattice Coherence in the Light-Induced Structural Phase Transition of V₂O₃. Physical Review Letters, 129(25), Article 255701. https://doi.org/10.1103/PhysRevLett.129.255701

Li, Z., Anankanbil, S., Pedersen, J. N., Nadzieja, M. & Guo, Z. (2023). Nanocellulose fractionated from TEMPO-mediated oxidation of cellulose as an energy-free ingredient for stabilizing Pickering emulsion. Biochemical Engineering Journal, 191, Article 108795. https://doi.org/10.1016/j.bej.2022.108795

Højlund, M. G., Jensen, A. B., Zoccante, A. & Christiansen, O. (2022). Bivariational time-dependent wave functions with biorthogonal adaptive basis sets: General formulation and regularization of equations of motion through polar decomposition. Journal of Chemical Physics, 157(23), Article 234104. https://doi.org/10.1063/5.0127431

Kjærgaard, M., Rasmussen, L. S., Vinther, J. N., Andersen, K. R., Andersen, E. S., Lorentzen, E., Thirup, S. S., Otzen, D. & Brodersen, D. E. (2022). A Semester-Long Learning Path Teaching Computational Skills via Molecular Graphics in PyMOL. The Biophysicist, 3(2), 106–114. https://doi.org/10.35459/tbp.2022.000219

Asif, M. R., Foged, N., Bording, T. S., Larsen, J. J. & Christiansen, A. V. (2023). DL-RMD: a geophysically constrained electromagnetic resistivity model database for deep learning applications. Earth System Science Data, 15(3), 1389-1401. https://doi.org/10.5194/essd-2022-345, https://doi.org/10.5194/essd-15-1389-2023

Asif, M. R., Maurya, P. K., Larsen, J. J. & Christiansen, A. V. (2022). Investigating the Integration of Neural Networks in Least-Squares Method for Airborne Electromagnetic Data Inversion. 1-5. Paper presented at NSG2022 3rd Conference on Airborne, Drone and Robotic Geophysics, Beograd, Serbia. https://doi.org/10.3997/2214-4609.202220034

Hansen, K. A., Liu, T. X. & Malekian, A. (Eds.) (2022). Web and Internet Economics: 18th International Conference, WINE 2022, Troy, NY, USA, December 12-15, 2022, Proceedings. Springer. Lecture Notes in Computer Science Vol. 13778 https://doi.org/10.1007/978-3-031-22832-2

Asif, M. R., Bording, T. S., Barfod, A. S., Auken, E. & Larsen, J. J. (2020). Effect of data normalization on neural networks for the forward modelling of transient electromagnetic data. In 26th European Meeting of Environmental and Engineering Geophysics, Held at Near Surface Geoscience 2020 Article 061 European Association of Geoscientists and Engineers, EAGE. https://doi.org/10.3997/2214-4609.202020061

Asif, M. R., Larsen, J. J., Auken, E. & Christiansen, A. V. (2022). Deep Convolutional Auto-Encoder for Automated Processing of Airborne Time-Domain Electromagnetic Data. 1-5. Paper presented at NSG2022 3rd Conference on Airborne, Drone and Robotic Geophysics, Beograd, Serbia. https://doi.org/10.3997/2214-4609.202220038

Nazario, E. C., Cade, D. E., Bierlich, K. C., Czapanskiy, M. F., Goldbogen, J. A., Kahane-Rapport, S. R., van der Hoop, J. M., San Luis, M. T. & Friedlaender, A. S. (2022). Baleen whale inhalation variability revealed using animal-borne video tags. PeerJ, 10, Article e13724. https://doi.org/10.7717/peerj.13724

Leiszner, S. S., Chakarawet, K., Long, J. R., Nishibori, E., Sugimoto, K., Platts, J. A. & Overgaard, J. (2023). Electron Density Analysis of Metal-Metal Bonding in a Ni₄ Cluster Featuring Ferromagnetic Exchange. Inorganic Chemistry, 62(1), 192-200. https://doi.org/10.1021/acs.inorgchem.2c03170

Dinesen, A., Winther, A., Wall, A., Märcher, A., Palmfeldt, J., Chudasama, V., Wengel, J., Gothelf, K. V., Baker, J. R. & Howard, K. (2022). An Albumin Biomolecular Drug Design Stabilized through Improved Thiol Conjugation and a Modular Locked Nucleic Acid Assembly. Poster session presented at Controlled Release Society 2022 Annual Meeting, Montreal, Quebec, Canada.

Broge, N. L. N., Bertelsen, A. D., Søndergaard-Pedersen, F. & Iversen, B. B. (2023). Facile Solvothermal Synthesis of Pt-Ir-Pd-Rh-Ru-Cu-Ni-Co High-Entropy Alloy Nanoparticles. Chemistry of Materials, 35(1), 144-153. https://doi.org/10.1021/acs.chemmater.2c02842

McLeod, D., Inunnguaq Jessen, N., Nguyen, T. V. Q., Espe, M., Erickson, J. D., Anker Jørgensen, K., Yang, L. & Houk, K. N. (2022). Influence of Achiral Phosphine Ligands on a Synergistic Organo- and Palladium-Catalyzed Asymmetric Allylic Alkylation. Chemistry - A European Journal, 28(71), Article e202202951. https://doi.org/10.1002/chem.202202951

Sandemann, J. R., Grønbech, T. B. E., Støckler, K. A. H., Ye, F., Chakoumakos, B. C. & Iversen, B. B. (2023). Direct Visualization of Magnetic Correlations in Frustrated Spinel ZnFe₂O₄. Advanced Materials, 35(5), Article 2207152. https://doi.org/10.1002/adma.202207152

the EuroSIDA study (2021). Prevalence and Outcomes for Heavily Treatment-Experienced Individuals Living With Human Immunodeficiency Virus in a European Cohort. JAIDS: Journal of Acquired Immune Deficiency Syndromes , 87(2), 806-817. https://doi.org/10.1097/QAI.0000000000002635

Sejr, M. K., Bruhn, A., Dalsgaard, T., Juul-Pedersen, T., Stedmon, C. A., Blicher, M., Meire, L., Mankoff, K. D. & Thyrring, J. (2022). Glacial meltwater determines the balance between autotrophic and heterotrophic processes in a Greenland fjord. Proceedings of the National Academy of Sciences (PNAS), 119(52), Article e2207024119. https://doi.org/10.1073/pnas.2207024119

Christensen, O., Zhao, S., Sun, Z., Bagger, A., Lauritsen, J. V., Pedersen, S. U., Daasbjerg, K. & Rossmeisl, J. (2022). Can the CO₂Reduction Reaction Be Improved on Cu: Selectivity and Intrinsic Activity of Functionalized Cu Surfaces. ACS Catalysis, 12(24), 15737-15749. https://doi.org/10.1021/acscatal.2c04200

Fashing, P. J., Nguyen, N., Demissew, S., Gizaw, A., Atickem, A., Mekonnen, A., Nurmi, N. O., Kerby, J. T. & Stenseth, N. C. (2022). Ecology, evolution, and conservation of Ethiopia’s biodiversity. Proceedings of the National Academy of Sciences (PNAS), 119(50), Article e2206635119. https://doi.org/10.1073/pnas.2206635119

Taiz, L., Møller, I. M., Murphy, A. & Zieger, E. (2022). Plant Physiology and Development. (7 ed.) Sinauer Associates.

Cummings, C. (2024). Left-right symmetry of finite finitistic dimension. Bulletin of the London Mathematical Society, 56(2), 624-633. https://doi.org/10.1112/blms.12954

Auffret, A. G. & Svenning, J. C. (2022). Climate warming has compounded plant responses to habitat conversion in northern Europe. Nature Communications, 13, Article 7818. https://doi.org/10.1038/s41467-022-35516-7

Foskolos, I., Pedersen, M. B., Beedholm, K., Uebel, A. S., Macaulay, J., Stidsholt, L., Brinkløv, S. & Madsen, P. T. (2022). Erratum: Echolocating Daubenton's bats are resilient to broadband, ultrasonic masking noise during active target approaches (The Journal of experimental biology (2022) 225 3 PII: jeb244494). Journal of Experimental Biology, 225(10). https://doi.org/10.1242/jeb.244494

Brandt, C. B., Fonager, S. V., Haskó, J., Helmig, R. B., Degn, S., Bolund, L., Jessen, N., Lin, L. & Luo, Y. (2023). HIF1A Knockout by Biallelic and Selection-Free CRISPR Gene Editing in Human Primary Endothelial Cells with Ribonucleoprotein Complexes. Biomolecules, 13(1), Article 23. https://doi.org/10.3390/biom13010023

Pirhaghi, M., Frank, S. A., Alam, P., Nielsen, J., Sereikaite, V., Gupta, A., Strømgaard, K., Andreasen, M., Sharma, D., Saboury, A. A. & Otzen, D. E. (2022). A penetratin-derived peptide reduces the membrane permeabilization and cell toxicity of α-synuclein oligomers. Journal of Biological Chemistry, 298(12), Article 102688. https://doi.org/10.1016/j.jbc.2022.102688

Curticapean, R., Limaye, N. & Srinivasan, S. (2022). On the VNP-Hardness of Some Monomial Symmetric Polynomials. In A. Dawar & V. Guruswami (Eds.), 42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, FSTTCS 2022 Article 16 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.FSTTCS.2022.16

Bishnu, A., Ghosh, A., Mishra, G. & Paraashar, M. (2022). Counting and Sampling from Substructures Using Linear Algebraic Queries. In A. Dawar & V. Guruswami (Eds.), 42nd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, FSTTCS 2022 Article 8 Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.FSTTCS.2022.8

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