Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Dupont-Dupuis, F., Szehr, O. & Tomamichel, M. (2014). A decoupling approach to classical data transmission over quantum channels. I E E E Transactions on Information Theory, 60(3), 1562 - 1572 . https://doi.org/10.1109/TIT.2013.2295330

Arge, L., Goodrich, M. T. & Walderveen, F. V. (2013). Computing betweenness centrality in external memory. In Proceedings, 2013 IEEE International Conference on Big Data (pp. 368 - 375 ). IEEE. https://doi.org/10.1109/BigData.2013.6691597

Wasmund, K., Schreiber, L., Lloyd, K., Petersen, D. G., Schramm, A., Stepanauskas, R., Jørgensen, B. B. & Adrian, L. (2014). Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi. I S M E Journal, 8, 383-397. https://doi.org/10.1038/ismej.2013.143

Banerjee, A., Danvy, O., Doh, K.-G. & Hatcliff , J. (Eds.) (2013). Semantics, Abstract Interpretation, and Reasoning about Programs: Essays Dedicated to David A. Schmidt on the Occasion of his Sixtieth Birthday : Festschrift for Dave Schmidt, Manhattan, Kansas, USA, 19-20th September 2013. http://published.eptcs.org/. Electronic Proceedings in Theoretical Computer Science Vol. 129 https://doi.org/10.4204/EPTCS.129

Birkedal, L., Bizjak, A. & Schwinghamme, J. (2013). Step-Indexed Relational Reasoning for Countable Nondeterminism. Logical Methods in Computer Science, 9(4), Article 4. https://doi.org/10.2168/LMCS-9(4:4)2013

Holm, L.-E., Dolezal , M. A., Bagnato, A., Vilkki, J. & Panitz, F. (2013). SNP detection workflow for deep re-sequencing data in cattle. In Book of Abstracts of the 64th Annual Meeting of the European Association for Animal Production (2013 ed., Vol. 19, pp. 543). Wageningen Academic Publishers. http://www.eaap.org/Previous_Annual_Meetings/2013Nantes/Nantes_2013_Abstracts.pdf

Holm, L.-E., Dolezal , M. A., Bagnato, A., Vilkki, J. & Panitz, F. (2013). SNP detection workflow for deep re-sequencing data in cattle. Poster session presented at 64th Annual Meeting of the European Federation of Anmal Science, Nantes, France. http://www.eaap.org/Previous_Annual_Meetings/2013Nantes/Nantes_2013_Abstracts.pdf

Hove, D., Jensen, A. S. & Riisager, K. (2013). Global phenomenological descriptions of nuclear odd-even mass staggering. Physical Review C (Nuclear Physics), 88. https://doi.org/10.1103/PhysRevC.88.064329

Maia, R. P., Madsen, P., Pedersen, J. & Labouriau, R. (2013). Genetic study of mortality rate in Danish dairy cows: a multivariate competing risk analysis. Poster session presented at 64th Annual Meeting of the European Federation of Anmal Science, Nantes, France. http://www.eaap.org/Previous_Annual_Meetings/2013Nantes/Nantes_2013_Abstracts.pdf

Min, G., Bjerglund, K. M., Kramer, S., Gøgsig, T., Lindhardt, A. T. & Skrydstrup, T. (2013). Generation of Stoichiometric Ethylene and Isotopic Derivatives and Application in Transition Metal-Catalyzed Vinylation and Enyne Metathesis. Chemistry: A European Journal, 19(51), 17603–17607. https://doi.org/10.1002/chem.201303668

Cedhagen, T., Lejzerowicz, F. & Pawlowski, J. (2013). Foraminifera of the deep Southern Ocean: bentho-pelagic distribution and past and present metagenetics. In Berichte zur Polar- und Meeresforschung (pp. 81-83)

Cedhagen, T., Hauquier, F., Jörger, K., Lejzerowicz, F., Mulsow, S., Würzberg, L. & Zinkann, A.-C. (2013). Foraminifera of the deep Southern Ocean: MUC deployments. In Berichte zur Polar- und Meeresforschung (pp. 76-78)

Janussen, D., Brandao, S., Cedhagen, T., Hauquier, F., Havermans, C., Jörger, K., Lejzerowicz, F., Meyer-Löbbecke, A., Schnurr, S., Schwabe, E., Vortkamp, M., Würzberg, L., Zinkann, A. C. & Brandt, A. (2013). Agassiz trawl (AGT) deployments. In Berichte zur Polar- und Meeresforschung (pp. 115-117)

Wohl, B. M., Smith, A. A. A., Kryger, M. B. L. & Zelikin, A. N. (2013). Narrow Therapeutic Window of Ribavirin as an Inhibitor of Nitric Oxide Synthesis is Broadened by Macromolecular Prodrugs. Biomacromolecules, 14(11), 3916-26. https://doi.org/10.1021/bm401048s

Lund-Hansen, L. C., Hawes, I., Sorrell, B. K. & Holtegaard Nielsen, M. (2014). Removal of snow cover inhibits spring growth of Arctic ice algae through physiological and behavioral effects. Polar Biology, 37, 471–481. https://doi.org/10.1007/s00300-013-1444-z

Kalueff, A. V., Gebhardt, M., Stewart, A. M., Cachat, J. M., Brimmer, M., Chawla, J. S., Craddock, C., Kyzar, E. J., Roth, A., Landsman, S., Gaikwad, S., Robinson, K., Baatrup, E., Tierney, K., Shamchuk, A., Norton, W., Miller, N., Nicolson, T., Braubach, O. ... Zebrafish Neuroscience Research Consortium (2013). Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond. Zebrafish, 10(1), 70-86. https://doi.org/10.1089/zeb.2012.0861

Bjerregaard-Andersen, K., Perdreau-Dahl, H., Guldsten, H., Praetorius, J., Jensen, J. K. & Morth, J. P. (2013). The N-terminal cytoplasmic region of NCBE displays features of an intrinsic disordered structure and represents a novel target for specific drug screening. Frontiers in Physiology, 4, 320. https://doi.org/10.3389/fphys.2013.00320

Howard, K. & Peer, D. (2013). Providing the full picture: A mandate for standardizing nanoparticle-based drug delivery. Nanomedicine, 8(7), 1031-1033. https://doi.org/10.2217/NNM.13.95

Uzureau, P., Uzureau, S., Lecordier, L., Fontaine, F., Tebabi, P., Homblé, F., Grélard, A., Zhendre, V., Nolan, D. P., Lins, L., Crowet, J.-M., Pays, A., Felu, C., Poelvoorde, P., Vanhollebeke, B., Moestrup, S. K., Lyngsø, J., Pedersen, J. S., Mottram, J. C. ... Pays, E. (2013). Mechanism of Trypanosoma brucei gambiense resistance to human serum. Nature, 501(7467), 430-4. https://doi.org/10.1038/nature12516

Baggesen, L. M., Hoffmann, S. V. & Nielsen, S. B. (2014). On the Formation of Thymine Photodimers in Thymine Single Strands and Calf Thymus DNA. Photochemistry and Photobiology, 90(1), 99-106. https://doi.org/10.1111/php.12183

Pedersen, S. O., Støchkel, K., Byskov, C. S., Nielsen, L. M. & Nielsen, S. B. (2013). Gas-phase spectroscopy of protonated adenine, adenosine 5′-monophosphate and monohydrated ions. Physical Chemistry Chemical Physics, 15(45), 19748-19752. https://doi.org/10.1039/c3cp53742k

MacLot, S., Rangama, J., Nielsen, S. B. & Poully, J.-C. (2013). Nanosolvation by acetonitrile and 18-crown-6 ether induce strongly different effects on the electron-capture induced dissociation of aromatic tripeptide cations in the gas phase. International Journal of Mass Spectrometry, 337, 1-11. https://doi.org/10.1016/j.ijms.2012.12.014

Demers-Carpentier, V., Rasmussen, A. M. H., Goubert, G., Ferrighi, L., Dong, Y., Lemay, J.-C., Masini, F., Zeng, Y., Hammer, B. & McBreen, P. H. (2013). Stereodirection of an α-ketoester at sub-molecular sites on chirally modified Pt(111): Heterogeneous asymmetric catalysis. Journal of the American Chemical Society, 135(27), 9999-10002. https://doi.org/10.1021/ja403955k

Gonzalez, B. B. & Howard, K. (2012). Polycation-based nanoparticle delivery of RNAi therapeutics: Adverse effects and solutions. Advanced Drug Delivery Reviews, 64(15), 1717-1729. https://doi.org/10.1016/j.addr.2012.07.004

Ebbesen, M. F., Schaffert, D. H., Crowley, M. L., Oupický, D. & Howard, K. (2013). Synthesis of click-reactive HPMA copolymers using RAFT polymerization for drug delivery applications. Journal of Polymer Science. Part A, Polymer Chemistry, 51(23), 5091-5099. https://doi.org/10.1002/pola.26941

Howard, K. (2013). Bioresponsive nanoparticles for the intracellular delivery of RNAi therapeutics. In Nanotechnology for the Delivery of Therapeutic Nucleic Acids (pp. 129-151). Pan Stanford Publishing. https://doi.org/10.4032/9789814411059

Nawroth, I., Alsner, J., Deleuran, B. W., Dagnæs-Hansen, F., Yang, C., Horsman, M. R., Overgaard, J., Howard, K., Kjems, J. & Gao, S. (2013). Peritoneal macrophages mediated delivery of chitosan/siRNA nanoparticle to the lesion site in a murine radiation-induced fibrosis model. Acta Oncologica, 52(8), 1730-1738. https://doi.org/10.3109/0284186X.2012.726373

Gonzalez, B. B., Ebbesen, M. F. & Howard, K. (2014). Polycation-based nanoparticles for RNAi-mediated cancer treatment. Cancer Letters, 352, 66-80. https://doi.org/10.1016/j.canlet.2013.09.023

Ebbesen, M. F., Whitehead, B. J., Gonzalez, B. B., Kingshott, P. & Howard, K. (2013). Surface analysis of PEGylated nano-shields on nanoparticles installed by hydrophobic anchors. Pharmaceutical Research, 30(7), 1758-1767. https://doi.org/10.1007/s11095-013-1018-3

Glover, K. A., Pertoldi, C., Besnier, F., Wennevik, V., Kent, M. & Skaala, T. (2013). Atlantic salmon populations invaded by farmed escapees: Quantifying genetic introgression with a Bayesian approach and SNPs. BMC Genetics, 14, 74. https://doi.org/10.1186/1471-2156-14-74

Levi, P. S., Tank, J. L., Tiegs, S. D., Chaloner, D. T. & Lamberti, G. A. (2013). Biogeochemical transformation of a nutrient subsidy: Salmon, streams, and nitrification. Biogeochemistry, 113(1-3), 643-655. https://doi.org/10.1007/s10533-012-9794-0

Kragh, H. (2014). Naming the big bang. Historical Studies in the Natural Sciences, 44(1), 3-36. https://doi.org/10.1525/hsns.2014.44.1.3

Smith, A. B., Sandel, B., Kraft, N. J. B. & Carey, S. (2013). Characterizing scale-dependent community assembly using the functional-diversity-area relationship. Ecology, 94(11), 2392-2402.

Pellissier, L., Rohr, R. P., Ndiribe, C., Pradervand, J.-N., Salamin, N., Guisan, A. & Wisz, M. (2013). Combining food web and species distribution models for improved community projections. Ecology and Evolution, 3(13), 4572-4583. https://doi.org/10.1002/ece3.843

Czarnomska, S. D., Jedrzejewska, B., Borowik, T., Niedziałkowska, M., Stronen, A. V., Nowak, S., Mysłajek, R. W., Okarma, H., Konopiński, M., Pilot, M., Śmietana, W., Caniglia, R., Fabbri, E., Randi, E., Pertoldi, C. & Jedrzejewski, W. (2013). Concordant mitochondrial and microsatellite DNA structuring between Polish lowland and Carpathian Mountain wolves. Conservation Genetics, 14(3), 573-588. https://doi.org/10.1007/s10592-013-0446-2

Contreras, S., Meister, P., Liu, B., Prieto-Mollar, X., Hinrichs, K. U., Khalili, A., Ferdelman, T. G., Kuypers, M. M. M. & Jørgensen, B. B. (2013). Cyclic 100-ka (glacial-interglacial) migration of subseafloor redox zonation on the Peruvian shelf. Proceedings of the National Academy of Sciences (PNAS), 110(45), 18098-18103. https://doi.org/10.1073/pnas.1305981110

Steen, A. D. & Arnosti, C. (2013). Extracellular peptidase and carbohydrate hydrolase activities in an Arctic fjord (Smeerenburgfjord, Svalbard. Aquatic Microbial Ecology, 69(2), 93-99. https://doi.org/10.3354/ame01625

Reymond, A., Purcell, J., Cherix, D., Guisan, A. & Pellissier, L. (2013). Functional diversity decreases with temperature in high elevation ant fauna. Ecological Entomology, 38(4), 364-373. https://doi.org/10.1111/een.12027

Leonhardt, S. D., Rasmussen, C. & Schmitt, T. (2013). Genes versus environment: Geography and phylogenetic relationships shape the chemical profiles of stingless bees on a global scale. Proceedings of the Royal Society B: Biological Sciences, 280(1762), Article 20130680. https://doi.org/10.1098/rspb.2013.0680, https://doi.org/10.1098/rspb.2013.0680

Oguri, K., Kawamura, K., Sakaguchi, A., Toyofuku, T., Kasaya, T., Murayama, M., Fujikura, K., Glud, R. N. & Kitazato, H. (2013). Hadal disturbance in the Japan Trench induced by the 2011 Tohoku-Oki earthquake. Scientific Reports, 3, Article 1915. https://doi.org/10.1038/srep01915

Carreira, C., Larsen, M., Glud, R., Brussaard, C. P. D. & Middelboe, M. (2013). Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment. Aquatic Microbial Ecology, 69(3), 183-192. https://doi.org/10.3354/ame01639

Arribas, P., Andújar, C., Sánchez-Fernández, D., Rodenas, P. A. & Millán, A. (2013). Integrative taxonomy and conservation of cryptic beetles in the Mediterranean region (Hydrophilidae). Zoologica Scripta, 42(2), 182-200. https://doi.org/10.1111/zsc.12000

Pruitt, J. N., Grinsted, L. & Settepani, V. (2013). Linking levels of personality: Personalities of the 'average' and 'most extreme' group members predict colony-level personality. Animal Behaviour, 86(2), 391-399. https://doi.org/10.1016/j.anbehav.2013.05.030

Zhang, J., Kissling, W. D. & He, F. (2013). Local forest structure, climate and human disturbance determine regional distribution of boreal bird species richness in Alberta, Canada. Journal of Biogeography, 40(6), 1131-1142. https://doi.org/10.1111/jbi.12063

Junsongduang, A., Balslev, H., Inta, A., Jampeetong, A. & Wangpakapattanawong, P. (2013). Medicinal plants from swidden fallows and sacred forest of the Karen and the Lawa in Thailand. Journal of Ethnobiology and Ethnomedicine, 9(1). https://doi.org/10.1186/1746-4269-9-44

Damgård, I. B. & Scafuro, A. (2013). Unconditionally Secure and Universally Composable Commitments from Physical Assumptions. In K. Sako & P. Sarkar (Eds.), Advances in Cryptology - ASIACRYPT 2013: 19th International Conference on the Theory and Application of Cryptology and Information Security, Bengaluru, India, December 1-5, 2013, Proceedings, Part II (pp. 100-119 ). Springer VS. https://doi.org/10.1007/978-3-642-42045-0_6

Sorrell, B. K., Hawes, I. & Safi, K. (2013). Nitrogen and carbon limitation of planktonic primary production and phytoplankton-bacterioplankton coupling in ponds on the McMurdo Ice Shelf, Antarctica. Environmental Research Letters, 8(3), 035043. https://doi.org/10.1088/1748-9326/8/3/035043

Nemésio, A., Rasmussen, C., Aguiar, A. P., Pombal Jr., J. P. & Dubois, A. (2013). Nomenclatural issues in ornithology: the incredible controversy on the identity of a long overlooked Brazilian bird. Zootaxa, 3734(2), 241-258. https://doi.org/10.11646/zootaxa.3734.2.8

Stronen, A. V., Jedrzejewska, B., Pertoldi, C., Demontis, D., Randi, E., Niedziałkowska, M., Pilot, M., Sidorovich, V. E., Dykyy, I., Kusak, J., Tsingarska, E., Kojola, I., Karamanlidis, A. A., Ornicans, A., Lobkov, V. A., Dumenko, V. & Czarnomska, S. D. (2013). North-South Differentiation and a Region of High Diversity in European Wolves (Canis lupus). PLoS One, 8(10). https://doi.org/10.1371/journal.pone.0076454

Aguiar, A. P., Deans, A. R., Engel, M. S., Forshage, M., Huber, J. T., Jennings, J. T., Johnson, N. F., Lelej, A. S., Longino, J. T., Lohrmann, V., Mikó, I., Ohl, M., Rasmussen, C., Taeger, A. & Yu, D. S. K. (2013). Order hymenoptera. Zootaxa, 3703(1), 51-62. https://doi.org/10.11646/zootaxa.3703.1.12

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