Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Wyer, J. (2009). Tagging of protonated Ala-Tyr and Tyr-Ala by Crown Ether prevents direct Hydrogen Loss and Proton Mobility after Photoexcitation: Importance for Gas Phase Absorption Spectra, Dissociation Lifetimes and Channels. Poster session presented at Third International Workshop on Electrostatic Storage Devices, Århus, Denmark.

Stald, L. J. (2009). Spil en rolle og lær noget nyt. Kaskelot, (178), 12-16.

Stald, L. J. (2009). Rollespillet i museumsformidlingen. Danske Museer, 22(5), 12-15.

Klose, K. & Ostermann, K. (2009). A Classification Framework for Pointcut Languages in Runtime Monitoring. In Objects, Components, Models and Patterns (pp. 289-307). Springer. https://doi.org/10.1007/978-3-642-02571-6_17

Caspersen, M. E. & Kölling, M. (2009). STREAM: A First Programming Process. ACM Transactions on Computing Education, 9(1). https://doi.org/10.1145/1513593.1513597

Pedersen, H. B., Altevogt, S., Heber, O., Rappaport, M., Zajfman, D. & Wolf, A. (2003). Molecular Ion Beam Trap for Photofragmentation Experiments at the TTF VUV FEL. In HASYLAB Annual Report (pp. 845)

Pedersen, H. B., Altevogt, S., Heber, O., Rappaport, M., Schwalm, D., Urbain, X., Zajfman, D. & Wolf, A. (2004). Low-Energy Ion Beam Trap for Photodissociation Imaging of Molecular Ions at the TESLA Free Electron Laser. In MPIK Progress Report 2003/2004 (pp. 161)

Pedersen, H. B., Altevogt, S., Heber, O., Rappaport, M. L., Schwalm, D., Zajfman, D., Ullrich, J., Wolf, A., Treusch, R., Guerassimova, N., Martins, M., Hoeft, J.-T. & Wellhöfer, M. (2006). New insight into excited molecular matter: FLASH photodissociation of HeH⁺. In HASYLAB Annual Report (pp. 415-416)

Wolf, A., Kreckel, H., Motsch, M., Mikosch, J., Glosik, J., Plasil, R., Altevogt, S., Andrianarijaona, V., Buhr, H., Hoffmann, J., Lammich, L., Lestinski, M., Nevo, I., Novotny, S., Orlov, D. A., Pedersen, H. B., Sprenger, F., Terekhov, A. S., Toker, J. ... Zajfman, D. (2006). Effects of molecular rotation in low-energy electron collisions of H₃⁺. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 364, 2981-2997.

Kristensen, L. S., Wojdacz, T. K., Thestrup, B. B., Wiuf, C. H., Hager, H. & Hansen, L. L. (2009). Quality assessment of DNA derived from up to 30 years old formalin fixed paraffin embedded (FFPE) tissue for PCR-based methylation analysis using SMART-MSP and MS-HRM. B M C Cancer, 9(453), 453.

Christensen, T., Lynnerup, N. & Heinemeier, J. (2004). Kirkegården i Kongemarken. In N. Lund (Ed.), Kristendommen i Danmark før 1050 (pp. 142-152). Roskilde Museum.

Clemmensen, L. B., Murray, A. S., Heinemeier, J. & de Jong, R. (2009). Erratum to The evolution of Holocene coastal dunefields, Jutland, Denmark: A record of climate change over the past 5000 years (Geomorphology 105 (2009) 303-313). Geomorphology, 110(3-4), 236-237.

Eiríksson, J., Knudsen, K. L., Larsen, G., Olsen, J., Heinemeier, J., Jónsdóttir, H. B. B., Jiang, H., Ran, L. & Símonarson, L. A. (2011). Coupling of palaeoceanographic shifts and changes in marine reservoir ages of North Iceland through the last millennium. Palaeogeography, Palaeoclimatology, Palaeoecology, 302(1-2), 95-108. https://doi.org/10.1016/j.palaeo.2010.06.002

Eiriksson, J., Larsen, G., Knudsen, K. L., Heinemeier, J., Kristiansdóttir, S. & Jiang, H. (2009). Tephrochronology as a dating tool for North Iceland shelf sediment cores and as an independent control on AMS ¹⁴C dating of molluscs to resolve temporal changes in marine reservoir ages . Abstract from Millennium Milestone Meeting, Cala Millor, Mallorca, Spain.

Pedersen, L., Pedersen, L. E., Bøtkjær, K. A., Vestergaard, A. L., Ward, S., Andersen, L. M., Mikkelsen, J. H., Bechstein, S., Lassen, L. B., Liu, Z., Beer, C., Chen, Z., Lykke-Andersen, S., Gao, S., Sørensen, H. P., Duch, M. R., Schmitt-John, T., Andreasen, P. & Martensen, P. M. (2009). Practical course in Molecular Cell Biology. (1. ed.).

Fischer, A., Bennike, P. & Heinemeier, J. (2005). Særling fra Sejerø? Beretning fra Kalundborg og Omegns Museum.

Jørgensen, E., Kristensen, A. R., Østergaard, S. & Nielsen, L. R. (2010). Optimal Replacement Policies for Dairy Cows Based on Daily Yield Measurements. Journal of Dairy Science, 93(1), 75-92. https://doi.org/10.3168/jds.2009-2209

Jensen, L. T., Cockerell, F. E., Kristensen, T. N., Rako, L., Loeschcke, V., McKechnie, S. W. & Hoffmann, A. (2010). Adult Heat Tolerance Variation in Drosophila melanogaster is Not Related to Hsp70 Expression. Journal of Experimental Zoology. Part A: Ecological Genetics and Physiology (Print Edition), 313A(1), 35-44. https://doi.org/10.1002/jez.573

Young, J. F., Larsen, L. B., Malmendal, A., Nielsen, N. C., Straadt, I. K., Oksbjerg, N. & Bertram, H. C. (2010). Creatine-induced activation of antioxidative defence in myotube cultures revealed by explorative NMR-based metabonomics and proteomics. Journal of the international society of sports nutrition, 7(9). https://doi.org/10.1186/1550-2783-7-9

Maurer, J., Filsinger, F., Küpper, J., Meijer, G., Hansen, J. L., Nielsen, J. H., Holmegaard, L. & Stapelfeldt, H. (2009). Conformer Selection of 3-aminophenol. Poster session presented at Studies of Atoms and Molecules with "New Light Sources", Sandbjerg, Denmark.

Gehrels, R., Szkornik, K., Kirby, J., Bradley, S., Milne, G., Bartholdy, J., Pedersen, J. B. T., Heinemeier, J. & Marshall, W. (2005). Salt-marsh stratigraphy and late Holocene sea-level changes in Ho Bugt, western Denmark : implications for the ‘regional eustatic' history of the North Sea. Late Quaternary Coastal Changes 2005.

Kragh, H. (2009). Sagan, Carl. In Encyclopædia Britannica Online, http://search.eb.com/eb/article-9064728

Bertelsen, K., Jensen, B. P., Thøgersen, L., Tajkhorshid, E., Schiøtt, H. B., Skrydstrup, T., Nielsen, N. C. & Vosegaard, T. (2009). Residue-Specific Information about the Dynamics of Antimicrobial Peptides from ¹H−¹⁵N and ²H Solid-State NMR Spectroscopy. Journal of the American Chemical Society, 131(51), 18335–18342. https://doi.org/10.1021/ja908604u

Dalsgaard, K. (2009). Landskabet, bopladslag og marksystem. In M. Runge (Ed.), Nørre Hedegård: En nordjysk byhøj fra ældre jernalder (pp. 197-208). Jysk Arkæologisk Selskab.

Ebanks, B. & Stetkær, H. (2009). Continuous cocycles on locally compact groups. Aequationes Mathematicae, 78(1-2), 123-145. https://doi.org/10.1007/s00010-009-2970-1

Madsen, S. & Jensen, F. (2009). A Comparison of Algorithms for Large-Scale Constrained Optimization. Theoretical Chemistry Accounts, 123, 477-485.

Bakalova, A., Varbanov, H., Stanchev, S., Ivanov, D. & Jensen, F. (2009). DFT Study of the Structure and Spectral Behavior of new Pt(II) Complexes with 5-methyl-5(4-pyridyl)hydantoin. International Journal of Quantum Chemistry, 109, 826-836.

Jensen, F. (2010). An Atomic Counterpoise Method for Estimating Inter- and Intra-molecular Basis Set Superposition Errors. Journal of Chemical Theory and Computation, 6, 100-108.

Vissing Jensen, G., Søvsø Thomasen, L. & Skydsgaard, M. A., (2009). Rundspørge til gymnasier vedrørende brug af bogen og AT-forløbet ”Det uperfekte barn”, No. Det uperfekte barn, 16 p., Dec 01, 2009.

Mølholt, T. E., Mantovan, R., Gunnlaugsson, H. P., Bharuth-Ram, K., Fanciulli, M., Gíslason, H. P., Johnston, K., Kobayashi, Y., Langouche, G., Masenda, H., Naidoo, D., Ólafsson, S., Sielemann, R. & Weyer, G. (2009). Temperature and dose dependence of defect complex formation with ion-implanted Mn/Fe in ZnO. Physica B: Condensed Matter, 404(23-24), 4820-4822. https://doi.org/10.1016/j.physb.2009.08.187

Madsen, M. B., Goetz, W., Bertelsen, P., Binau, C. S., Folkmann, F., Gunnlaugsson, H. P., Hjøllum, J. Í., Hviid, S. F., Jensen, J., Kinch, K. M., Leer, K., Madsen, D. E., Merrison, J. P., Olsen, M., Arneson, H. M., Bell III, J. F., Gellert, R., Herkenhoff, K. E., Johnson, J. R. ... Yen, A. S. (2009). Overview of the magnetic properties experiments on the Mars Explorations Rovers. Journal of Geophysical Research: Planets, 114(E6). https://doi.org/10.1029/2008JE003098

Smedskjaer, M. M., Yue, Y., Deubener, J. & Gunnlaugsson, H. P. (2009). Correlation between Cationic Diffision and Fragility of Silicate Glasses. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 113(32), 11194-11200. https://doi.org/10.1021/jp904449t

Smith, P. H., Tamppari, L. K., Arvidson, R. E., Bass, D., Blaney, D., Boynton, W. V., Carswell, A., Catling, D. C., Clark, B. C., Duck, T., DeJong, E., Fisher, D., Goetz, W., Gunnlaugsson, H. P., Hecht, M. H., Hipkin, V., Hoffman, J., Hviid, S. F., Keller, H. U. ... Zent, A. P. (2009). H₂0 at the Phoenix Landing Site. Science, 325(5936), 58-61.

Bharuth-Ram, K., Gunnlaugsson, H. P., Weyer, G., Mantovan, R., Naidoo, D., Sielemann, R., Fanciulli, M., Langouche, G., Olafsson, S., Aigne, T. & Collaboration, ISOLDE. (2009). Mössbauer study of Fe in GaAs following ⁵⁷Mn⁺ implantation. Hyperfine Interactions, 191(1-3), 115-120. https://doi.org/10.1007/s10751-009-9961-4

Friis, H., Sylvestersen, R. L., Nebel, L. N., Poulsen, M. L. K. & Svendsen, J. B. (2010). Hydrothermally influenced cementation of sandstone: an example from deeply buried Cambrian sandstones from Bornholm, Denmark. Sedimentary Geology, 227(1-4), 11-19. https://doi.org/10.1016/j.sedgeo.2010.03.002

Jensen, J. L. (2009). A note on the linear memory Baum-Welch algorithm. Journal of Computational Biology, 16(9), 1209-1210. https://doi.org/10.1089/cmb.2008.0178

Gustafsson, M. (2009). Clusia rigida (Clusiaceae), a new xeromorphic species from the upper Marañon Valley, Peru. Arnaldoa, 16(1), 25-28.

Sosnowska, J. & Balslev, H. (2009). American palm ethnomedicine: A meta-analysis. Journal of Ethnobiology and Ethnomedicine, 5, 43. https://doi.org/10.1186/1746-4269-5-43

Moeslund, J. E., Bøcher, P. K., Svenning, J.-C., Møllehave, T. & Arge, L. (2009). Impacts of 21^stcentury sea-level rise on a Danish major city - an assessment based on fine-resolution digital topography and a new flooding algorithm. IOP Conference Series: Earth and Environment Science, 8(1), 012022. https://doi.org/10.1088/1755-1315/8/1/012022

Hjermitslev, H. H. (2009). Introduktion og læsevejledning. In A. Aissa & S. Sørensen (Eds.), Charles Darwin: Menneskets afstamning og parringsvalget: Moderniseret udgave baseret på J.P. Jacobsens oversættelse (1 ed., Vol. 1, pp. 5-8). Husets Forlag.

Pedersen, V. K., Egholm, D. L. & Nielsen, S. B. (2009). A Glacial Upper Limit to Mountain Range Elevation. Abstract from American Geophysical Union (AGU) fall meeting, San Francisco, Ca., United States.

Abreu, G. C. G. D., Labouriau, R. & Edwards, D. (2009). High-dimensional Graphical Model Search with gRapHD R Package. ArXiv. http://arxiv.org/abs/0909.1234

Balslev, H. & Borchsenius, F. (2009). Conocimiento local, uso sostenible y conservacion de las palmas - ejemplos derivados de un grupo taxonómico grande, sujeto a uso intensivo. Abstract from Congreso Nacional de Conservación de la Biodiversidad a Través de su Uso, Sucre, Bolivia, Plurinational State of.

Moeslund, J. E., Arge, L., Bøcher, P. K., Nygaard, B. & Svenning, J.-C. (2009). Konsekvenser af "coastal squeezing" for plantesamfund på strandenge i Danmark.

Lund-Hansen, L. C., Jensen, K. T. & Jørgensen, A. I. (2009). Vietnamese estuaries and climate change. Poster session presented at The Copenhagen Climate Exchange CPHCO2009, København, Denmark.

Olsen, A., Siboska, G. E., Clark, B. F. & Rattan, S. I. (1999). N(6)-Furfuryladenine, kinetin, protects against Fenton reaction-mediated oxidative damage to DNA. Biochemical and Biophysical Research Communications, 265(2), 499-502. https://doi.org/10.1006/bbrc.1999.1669

Kahn, A. & Olsen, A. (2009). Stress to the Rescue: Is Hormesis a ‘Cure’ For Aging? Dose-Response.

Cvitanich, C., Przybyłowicz, W. J., Mesjasz-Przybyłowicz, J., Blair, M. W., Østergaard, E. & Stougaard, J. (2009). Iron, zinc, and manganese distribution in mature soybean seeds. In The Proceedings of the International Plant Nutrition Colloquium XVI eBook Collection. http://escholarship.org/uc/item/6mh1d8vv

Bek, A. S., Sauer, J., Thygesen, M. B., Duus, J. Ø., Petersen, B. O., Thirup, S., James, E., Jensen, K. J., Stougaard, J. & Radutoiu, S. (2010). Improved Characterization of Nod Factors and Genetically Based Variation in LysM Receptor Domains Identify Amino Acids Expendable for Nod Factor Recognition in Lotus spp. Molecular plant-microbe interactions, 23(1), 58-66. https://doi.org/10.1094/MPMI-23-1-0058