Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Grønbæk, K., Sloth, L. & Bouvin, N. O. (2000). Open Hypermedia as User Controlled Meta Data for the Web. In Proceedings of the 9th World Wide Web Conference

Bouvin, N. O. (2000). Designing user interfaces for collaborative web-based open hypermedia. In Proceedings of the eleventh ACM on Hypertext and hypermedia (pp. 230-231). Association for Computing Machinery. https://doi.org/10.1145/336296.336389

Bouvin, N. O. (2000). Experiences with OHP and Issues for the Future. In Open Hypermedia Systems and Structural Computing: 6th International Workshop, OHS-6 2nd International Workshop, SC-2 San Antonio, Texas, USA, May 30 – June 3, 2000 Proceedings (pp. 191-206). Springer. https://doi.org/10.1007/3-540-39941-0_3

Christensen, B. G., Hansen, F. A. & Bouvin, N. O. (2003). Xspect: bridging open hypermedia and XLink. In Proceedings of the 12th international conference on World Wide Web (pp. 490-499). Association for Computing Machinery. https://doi.org/10.1145/775152.775222

Jensen, R. L., Arnbjerg, J., Birkedal, H. & Ogilby, P. R. (2011). Singlet Oxygen's Response to Protein Dynamics. Journal of the American Chemical Society, 133, 7166-7173. https://doi.org/10.1021/ja2010708

Ding, V. Z. Y., Dawson, S. S. H., Lau, L. W. Y., Lee, D. R., Galant, N. J., Setiadi, D. H., Jójárt, B., Szöri, M., Mucsi, Z., Viskolcz, B., Jensen, S. K. & Csizmadia, I. G. (2011). A computational study of glutathione and its fragments: N-acetylcisteinylglycine and γ-glutamylmethylamide. Chemical Physics Letters, 507, 168-173. https://doi.org/10.1016/j.cplett.2011.03.067

Bødker, S. & Bouvin, N. O. (1995). Deliverable 1.4.2: The EuroCODE conceptual framework: Preliminary. Department of Computer Science, Aarhus University.

Bouvin, N. O., Cole, W. & Rau, A. (1999). Hypertext'99 doctoral consortium report. S I G W E B Newsletter, 8(2), 48-50. https://doi.org/10.1145/951425.951433

Lühr, A. C., Hansen, D. C., Palmans, H. & Bassler, N. (2011). Accuracy of ion beam dosimetry: Stopping power ratios and fluence correction factors. Poster session presented at PTCOG 50, Philadelphia, PA, United States.

Bouvin, N. O. (1999). The Arakne Framework. Department of Computer Science, Aarhus University. CIT-Coconut No. 99-03.1Intermedia Working Papers No. 1

Bouvin, N. O. & Thomsen, K. S. (1999). User Guide to the COCONUT Arakne Application. Department of Computer Science, Aarhus University. CIT-Coconut No. 99-04Intermedia Working Papers No. 2

Bouvin, N. O. & Anderson, K. M. (2000). Enabling project awareness and intersubjectivity via hypermedia-enabled event trails. University of Colorado. Technical Report No. CU-CS-911-00

Kristensen, L. K. (2004). Initial orbit determination for distant objects. Astronomical Journal, 127(4), 2424-2435.

Østerby, O., Møller-Pedersen, K. & North, J. (1975). Summa Ratione Confectum. Archives Internationales d'Histoire des Sciences, 25(96), 73-81.

Kläning, U. K. & Østerby, O. (1976). Hydration and Ion Pairing of Maleinates, Malonates and Substituted Malonates in Aqueos Solution. Journal of the Chemical Society, Faraday Transactions, 72, 513-525.

Østerby, O. (1976). SOR with Non-property a Matrices. In J. Albrecht & L. Collatz (Eds.), Numerische Behandlung von Differentialgleichungen, ISNM 31 (pp. 181-190). Birkhäuser Verlag.

Østerby, O. (1976). Prime Decompositions with Minimum Sum. BIT Numerical Mathematics, 16, 451-458.

Østerby, O. (1979). Efficient Solution of Tridiagonal Linear Systems. The Computer Journal, 22(3), 283-285.

Roy, A., D'Annessa, I., Nielsen, C. J. F., Tordrup, D. P., Laursen, R. R., Andersen, F. F., Desideri, A. & Knudsen, B. R. (2011). Peptide Inhibition of Topoisomerase IB from Plasmodium falciparum. Molecular Biology International, 854626. https://doi.org/10.4061/2011/854626

Sand, J. & Østerby, O. (1979). Regions of Absolute Stability. Department of Computer Science, Aarhus University. Daimi Report Series (DAIMI PB) No. 102

Zlatev, Z. & Østerby, O. (1980). Absolute stability properties of the explicit linear 3-step formulae. Department of Computer Science, Aarhus University. Daimi Report Series (DAIMI PB) No. 124

Gear, C. W. & Østerby, O. (1984). Solving Ordinary Differential Equations with Discontinuities. A C M Transactions on Mathematical Software, 10(1), 23-44. https://doi.org/10.1145/356068.356071

Damkjær, M., Brøndum, E. T., Grøndahl, C., Bertelsen, M. F., Hasenkam, J. M., Wang, T., Candy, G. & Bie, P. (2011). Low blood volume in the giraffe (Giraffa camelopardalis). Poster session presented at Experimental Biology , Washington DC, United States.

Hørlyck, A., Petersen, K. K., Sloth, E., Baandrup, U. T., Bertelsen, M. F., Brøndum, E. T., Candy, G., Grøndahl, C., Hasenkam, J. M., Secher, N. H., Wang, T., Østergaard, K. H. & Aalkjær, C. (2011). Function of a sphincter-like structure in the median artery of the giraffe foreleg. Poster session presented at Experimental Biology, Washington DC, United States.

Berg, P., Røy, H. & Wiberg, P. L. (2007). Eddy correlation flux measurements: The sediment surface area that contributes to the flux. Limnology and Oceanography, 52(4), 1672-1684.

Omoregie, E. O., Mastalerz, V., de lange, G., Straub, K. L., Kappler, A., Røy, H., Stadnitskaia, A., Foucher, J.-P. & Boetius, A. (2008). Biogeochemistry and community composition of iron- and sulfur-precipitating microbial mats at the Chefren mud volcano (Nile Deep Sea fan, Eastern Mediterranean). Applied and Environmental Microbiology, 74(10), 3198-3215. https://doi.org/10.1128/AEM.01751-07

Billerbeck, M., Røy, H., Bosselmann, K. & Huettel, M. (2007). Benthic photosynthesis in submerged Wadden Sea intertidal flats. Estuarine, Coastal and Shelf Science, 71(3-4), 704-716. https://doi.org/10.1016/j.ecss.2006.09.019

Cook, P. L. M. & Røy, H. (2006). Advective relief of CO2 limitation in microphytobenthos in highly productive sandy sediments. Limnology and Oceanography, 51(4), 1594-1601.

Wild, C., Røy, H. & Huettel, M. (2005). Role of pelletization in mineralization of fine-grained coastal sediments. Marine Ecology Progress Series, 291, 23-33.

Røy, H., Huettel, M. & Jørgensen, BB. (2005). The influence of topography on the functional exchange surface of marine soft sediments, assessed from sediment topography measured in situ. Limnology and Oceanography, 50(1), 106-112.

Vopel, K., Thistle, D., Ott, J., Bright, M. & Røy, H. (2005). Wave-induced H2S flux sustains a chemoautotrophic symbiosis. Limnology and Oceanography, 50(1), 128-133.

Røy, H., Huettel, M. & Jørgensen, BB. (2004). Transmission of oxygen concentration fluctuations through the diffusive boundary layer overlying aquatic sediments. Limnology and Oceanography, 49(3), 686-692.

Berg, P., Røy, H., Janssen, F., Meyer, V., Jørgensen, BB., Huettel, M. & de Beer, D. (2003). Oxygen uptake by aquatic sediments measured with a novel non-invasive eddy-correlation technique. Marine Ecology Progress Series, 261, 75-83.

Østerby, O. (1985). Step Change Strategies for Multistep Methods. Department of Computer Science, Aarhus University. Daimi Report Series (DAIMI PB) No. 196

Huettel, M., Røy, H., Precht, E. & Ehrenhauss, S. (2003). Hydrodynamical impact on biogeochemical processes in aquatic sediments. Hydrobiologia, 494(1-3), 231-236.

Glud, RN., Gundersen, JK., Røy, H. & Jørgensen, BB. (2003). Seasonal dynamics of benthic O-2 uptake in a semienclosed bay: Importance of diffusion and faunal activity. Limnology and Oceanography, 48(3), 1265-1276.

Røy, H., huettel, M. & Jørgensen, BB. (2002). The role of small-scale sediment topography for oxygen flux across the diffusive boundary layer. Limnology and Oceanography, 47(3), 837-847.

Østerby, O. (1987). Estimation of Reaction Parameters in Gas Chromatograhy. In Proceedings of the Symposium on Applied Statistics. UNI-C (pp. 369-378)

Schmitz, T., Blaickner, M., Ziegner, M., Bassler, N., Grunewald, C., Kratz, J.-V., Schütz, C., Langguth, P., Sharpe, P., Palmans, H., Holzscheiter, M. H., Otto, G. & Hampel, G. (2011). Dose Determination using alanine detectors in a Mixed Neutron and Gamma Field for Boron Neutron Capture Therapy of Liver Malignancies. Acta Oncologica, 50(6), 817-822. https://doi.org/10.3109/0284186X.2011.582516

Kaiser, F.-J., Tölli, H., Bassler, N. & Jäkel, O. (2011). Initial Recombination in Air Filled Ionization Chambers. Poster session presented at ACTA Oncologica Symposium on Particle Therapy, Uppsala, Denmark.

Kaiser, F.-J., Bassler, N. & Jäkel, O. (2011). Silicon diodes as radiation detectors in carbon ion beams. Poster session presented at ACTA Oncologica Symposium on Particle Therapy, Uppsala, Denmark.

Jørgensen, P., Olsen, J., Helgaker, T. & Klopper, W. (2004). Wave Function-Based Quantum Chemistry. In P. Bultinck, H. de Winter, W. Langenaeker & J. P. Tollenaere (Eds.), Computational Medicinal Chemistry for Drug Discovery (pp. 57-88). Marcel Decker Inc.

Høst, S., Olsen, J., Jansik, B., Jørgensen, P., Reine, S., Helgaker, T., Salek, P. & Coriani, S. (2007). Towards Black-box Linear Scaling Optimization in Hartree-Fock and Kohn-Sham Theories. Lecture Series on Computer and Computational Sciences, 6, 177-189.

Coriani, S., Thorvaldsen, A. J., Kristensen, K. & Jørgensen, P. (2011). Variational Response-function Formulation of Vibrational Circular Dichroism. Physical Chemistry Chemical Physics, 13, 4224-4229. https://doi.org/10.1039/C0CP02230F

Scholz, J. C. & Greiner, M. (2011). Self-organizing weights for Internet AS-graphs and surprisingly simple routing metrics. Europhysics Letters, 94(2), 28008: p1-p6. https://doi.org/10.1209/0295-5075/94/28008

Andersen, J., Koch-Jensen, P. & Østerby, O. (1993). Corneal topography: Photokeratoscopy including the central region. Acta Ophthamologica, 71(2), 145-150. https://doi.org/10.1111/j.1755-3768.1993.tb04980.x

Andersen, J., Koch-Jensen, P. & Østerby, O. (1993). Corneal topography: Image processing and numerical analysis of keratoscopy. Acta Ophthamologica, 71(2), 151-159. https://doi.org/10.1111/j.1755-3768.1993.tb04981.x

Østerby, O. (1993). Stability of finite difference formulas for linear parabolic equations. In D. D. Bainov & V. Covachev (Eds.), Proceedings of the Second International Colloquium on Numerical Analysis (pp. 165-176)

Britz, D. & Østerby, O. (1994). Some Numerical Investigations of the Stability of Electrochemical Digital Simulation, Particularly as affected by First-Order Homogeneous Reactions. Journal of Electroanalytical Chemistry, 368(1-2), 143-147. https://doi.org/10.1016/0022-0728(93)03085-4

Bieniasz, L. K., Østerby, O. & Britz, D. (1995). Numerical stability of finite difference algorithms for electrochemical kinetic simulations. Matrix stability analysis of the classic explicit, fully implicit and Crank-Nicolson methods, extended to the 3- and 4-point gradient approximation at the electrodes. Computers & Chemistry, 19(4), 351-355. https://doi.org/10.1016/0097-8485(95)00056-X

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