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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Schneider, B. I. & Nygaard, N. (2002). Orthogonal functions, discrete variable representation, and generalized gauss quadratures. Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory, 106, 10773.
Nygaard, N., Bruun, G. M., Schneider, B. I., Clark, C. W. & Feder, D. L. (2004). Vortex line in a neutral finite-temperature superfluid Fermi gas. Physical Review A, 69, 053622.
Williams, J. E., Nygaard, N. & Clark, C. W. (2004). Phase diagrams for an ideal gas mixture of fermionic atoms and bosonic molecules. New J. Phys., 6, 123.
Williams, J. E., Nikuni, T., Nygaard, N. & Clark, C. W. (2004). Atom-molecule equilibration in a degenerate Fermi gas with resonant interactions. Journal of Physics B: Atomic, Molecular and Optical Physics, L351.
Schneider, B. I. & Nygaard, N. (2004). Discrete variable representation for singular Hamiltonians. Physical Review E, 70, 056706.
Morales, M. A., Nygaard, N., Williams, J. E. & Clark, C. W. (2005). Ultracold fermion cooling cycle using heteronuclear Feshbach resonances. New J. Phys., 7, 87.
Kistner, C., Winzer, T., Pizschke, A., Mulder, L., Sati, S., Kaneko, T., Tabata, S., Sandal, N. N., Stougaard, J., Webb, K. J., Szczyglowski, K. & Parniske, M. (2005). Seven Lotus japonicus genes required for transcriptional reprogramming of the root during fungal and bacterial symbiosis. Plant Cell, 17, 1-13.
Oblak, D., Petrov, P. G., Garrido Alzar, C. L., Tittel, W., Vershovski, A. K., Mikkelsen, J. K., Sørensen, J. L. & Polzik, E. S. (2005). Quantum-noise-limited interferometric measurement of atomic noise: Towards spin squeezing on the Cs clock transition. Physical Review A, 71, 043807.
Williams, J. E., Nygaard, N. & Clark, C. W. (2006). Theory of Feshbach molecule formation in a dilute gas during a magnetic field ramp. New Journal of Physics, 8(150).
Nygaard, N., Schneider, B. I. & Julienne, P. S. (2006). A two-channel R-matrix analysis of magnetic field induced Feshbach resonances. Physical Review A, 74, 042705.
Nygaard, N. (2005). Bose-Einstein Kondensation: Når atomer synger i kor. Kvant: Tidsskrift for Fysik og Astronomi, 1, 29.
Nygaard, N. (1999). Fysikkens varme emne. Berlingske Tidende.
Nygaard, N. (2001). Verdens mindste ekplosion. Berlingske Tidende.
Nygaard, N. (2001). Smukt eksperiment – Nobelpris. Berlingske Tidende.
Bødker, S. & Andersen, P. B. (2005). Complex Mediation. Journal of Human Computer Interaction, 20(4), 353-402.
Bødker, S. & Christiansen, E. (2006). Computer support for social awareness in flexible work. Computer Supported Cooperative Work (CSCW): The Journal of Collaborative Computing and Work Practices, 15(1), 1-28.
Bødker, S. & Petersen, A. B. (2005). Mediating the co-production of complex media products. Poster session presented at International ACM SIGGROUP Conference on Supporting Group Work, Sanibel Island, United States.
Biernacka, M., Danvy, O. & Sørensen, K. S. (2005). Extracting Evaluators from Proofs of Weak Head Normalization. In Electronic Notes in Theoretical Computer Science Elsevier Science Publishers.
Brodal, G. S., Demaine, E. D. & Munro, J. I. (2005). Fast Allocation and Deallocation with an Improved Buddy System. Acta Informatica, 41(4-5), 273-291. https://doi.org/10.1007/s00236-004-0159-6
Brodal, G. S., Fagerberg, R. & Moruz, G. (2005). On the Adaptiveness of Quicksort. In ALENEX05 (pp. 130-140). Society for Industrial and Applied Mathematics.
Arge, L., Brodal, G. S., Fagerberg, R. & Laustsen, M. (2005). Cache-Oblivious Planar Orthogonal Range Searching and Counting. In Proceedings of the twenty-first annual symposium on Computational geometry (pp. 160-169). Association for Computing Machinery. https://doi.org/10.1145/1064092.1064119
Brodal, G. S., Fagerberg, R. & Moruz, G. (2005). Cache-Aware and Cache-Oblivious Adaptive Sorting. In L. Caires, G. F. Italiano, L. Monteiro, C. Palamidessi & M. Yung (Eds.), Automata, Languages and Programming: 32nd International Colloquium, ICALP 2005, Lisbon, Portugal, July 11-15, 2005. Proceedings (pp. 576-588). Springer. https://doi.org/10.1007/11523468_47
Brodal, G. S. & Moruz, G. (2005). Tradeoffs Between Branch Mispredictions and Comparisons for Sorting Algorithms. In F. Dehne, A. Lopez-Ortiz & J.-R. Sack (Eds.), Algorithms and Data Structures: 9th International Workshop, WADS 2005, Waterloo, Canada, August 15-17, 2005. Proceedings (pp. 385-395). Springer. https://doi.org/10.1007/11534273_34
Brodal, G. S. & Fagerberg, R. (2006). Cache-oblivious String Dictionaries. In SODA '06 Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm (pp. 581-590). Association for Computing Machinery. https://doi.org/10.1145/1109557.1109621
Brodal, G. S. (2005). Finger Search Trees. In D. Mehta & S. Sahni (Eds.), Handbook of Data Structures and Applications CRC Press.
Arge, L., Brodal, G. S. & Fagerberg, R. (2005). Cache-Oblivious Data Structures. In D. Mehta & S. Sahni (Eds.), Handbook of Data Structures and Applications CRC Press.
Brodal, G. S. & Leonardi, S. (Eds.) (2005). ESA 2005: 13th Annual European Symposium: Springer LNCS.
Møller, A. & Schwartzbach, M. I. (2005). The Design Space of Type Checkers for XML Transformation Languages. In Database Theory - ICDT 2005: 10th International Conference, Edinburgh, UK, January 5-7, 2005. Proceedings (pp. 17-36). Springer. https://doi.org/10.1007/978-3-540-30570-5_2
Kristoffersen, T. K. (2006). Deviation measure in two-stage stochastic linear programming. Mathematical Methods of Operations Research, 62(2), 255-274.
Svenning, J.-C., Sanjines A., A., Normand, S., Vormisto, J. & Balslev, H. (2005). Environmental and spatial controls of palm (Arecaceae) species distributions at local to regional scales in neotropical forests. Poster session presented at The Palms - An International Symposium on the Biology of the Palm Family, The Linnean Society and The Royal Botanic Gardens, London and Kew, United Kingdom.
Bjorholm, S. W., Svenning, J.-C., Skov, F. & Balslev, H. (2006). Which factors control the distribution of palms in the Americas?. Poster session presented at ISOBIS Annual Meeting, 2006, Copenhagen, Denmark.
Knudsen, H. (2003). Til Nationens Dygtiggørelse: - den tekniske forskning mellem stat, industri og privat filantropi 1916-1937. Erhvervshistorisk årbog: meddelelser fra Erhvervsarkivet, 52, 48-97.
Knudsen, H. (2006). Politik, penge og forskningsvilkår. In Videnskab uden grænser: Dansk Naturvidenskabs Historie, Bind 4 (Vol. 4, pp. 262-279). Aarhus Universitetsforlag.
Knudsen, H. & Nielsen, K. H. (2006). Forskning uden for universiteterne. In H. Nielsen & K. Hvidtfelt Nielsen (Eds.), Viden uden grænser 1920-1970: Dansk Naturvidenskabs Historie, Bind 4 (Vol. 4, pp. 259-79). Aarhus Universitetsforlag.
Knudsen, H. (1999). Pandoras Æske: Anmeldelse af "Verden om tænkningen", Philosophia årg. 25, 3-4. Slagmark: tidsskrift for idéhistorie , (28-29), 191-194.
Bardram, J. E., Kjær, R. E. & Pedersen, M. Ø. (2003). Context-Aware User Authentication - Supporting Proximity-Based Login in Pervasive Computing. In Proceedings of Ubicomp 2003: Ubiquitous Computing (2864 ed., pp. 107-123). Springer.
Bahner, K. (2005). Design of a High Precision Control System. In Design of a High Precision Control System McMaster University.
Bahner, K. (2005). Report to SNEAP 2004. In Report to SNEAP 2004 McMaster Univeristy.
Bødker, S. & Nielsen, M. M. (2004). Desktop Computing. Australian Journal of Information Systems, 88-101.

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Vogl, C., Karapetiants, M., Yıldırım, B., Kjartansdóttir, H., Kosiol, C., Bergman, J., Majka, M. & Mikula, L. C. (2024). Inference of genomic landscapes using ordered Hidden Markov Models with emission densities (oHMMed). BMC Bioinformatics, 25(1), Article 151. https://doi.org/10.1186/s12859-024-05751-4
Vieira Macêdo, W., Poulsen, J. S., Vargas, S. R., Zaiat, M. & Nielsen, J. J. L. (2024). Integrated proteomic analysis reveals physiological changes during cometabolic degradation of Tetrabromobisphenol A (TBBPA) by Enterobacter cloacae strain ECsp1. International Biodeterioration and Biodegradation, 193, Article 105860. https://doi.org/10.1016/j.ibiod.2024.105860
Dechant, B., Kattge, J., Pavlick, R., Schneider, F. D., Sabatini, F. M., Moreno-Martínez, Á., Butler, E. E., van Bodegom, P. M., Vallicrosa, H., Kattenborn, T., Boonman, C. C. F., Madani, N., Wright, I. J., Dong, N., Feilhauer, H., Peñuelas, J., Sardans, J., Aguirre-Gutiérrez, J., Reich, P. B. ... Townsend, P. A. (2024). Intercomparison of global foliar trait maps reveals fundamental differences and limitations of upscaling approaches. Remote Sensing of Environment, 311, Article 114276. https://doi.org/10.1016/j.rse.2024.114276
Ji, Q. Q., Xie, Z., Wu, Y., Wan, Z., Xu, C., Wu, D., Chen, T. W. & Ordonez, A. (2024). Intraspecific trait variation of carrion beetle species and communities across elevations. Insect Conservation and Diversity, 17(6), 1113-1126. https://doi.org/10.1111/icad.12772
Digel, L. (2024). Investigation of Electron Conduction in Cable Bacteria. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Dalgaard, T., Butterbach-Bahl, K., Ambus, P., Normand, S., Hasler, B., Hutchings, N., Graversgaard, M., Thorsøe, M. H., Nielsen, H. O., Durand, P., Hansen, B., Skiba, U. M. & Sutton, M. A. (2024). Landscape Scale Guidance for Integrated Sustainable Nitrogen Management. 207. Abstract from The 9th International Nitrogen Conference, Delhi, India.
Mantoani, M. C., Guerra, L. C. C., Andrade, M. F., Dias, M. A. F. S., Dias, P. L. S., Rodrigues, F., Silva, D. M. C., Filho, V. B. D., Rudke, A. P., Martins, J. A., Martins, L. D., Torezan, J. M. D., Brancalion, P. H. S., Guillemot, J., Campoe, O. C., Phillips, V., Carotenuto, F., Šantl-Temkiv, T., Morris, C. E. & Gonçalves, F. L. T. (2024). Land-use patterns and fungal bioaerosols in the Brazilian Atlantic Forest biome. Discover Environment, 2(1), Article 19. https://doi.org/10.1007/s44274-024-00049-x
Lenoir, J., Svenning, J. C. & Sheffer, M. M. (2024). Latitudinal and Elevational Range Shifts Under Contemporary Climate Change. In Encyclopedia of Biodiversity: Volume 3 (3 ed., Vol. 3, pp. 690-709). Academic Press. https://doi.org/10.1016/B978-0-12-822562-2.00386-8
Mose Jørgensen, K.-E. (2024). Life history in a complex sea: Ichthyoplankton phenology in the Kattegat. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Rowan, J., Du, A., Lundgren, E. J., Faith, J. T., Beaudrot, L., Campisano, C. J., Joordens, J. C., Lazagabaster, I. A., Locke, E. M., Smail, I. E., Reed, K. E. & Kamilar, J. M. (2024). Long-term biotic homogenization in the East African Rift System over the last 6 million years of hominin evolution. Nature Ecology and Evolution, 8(9), 1751-1759. https://doi.org/10.1038/s41559-024-02462-0
Chen, S. C., Musat, F., Richnow, H. H. & Krüger, M. (2024). Microbial diversity and oil biodegradation potential of northern Barents Sea sediments. Journal of Environmental Sciences, 146, 283-297. https://doi.org/10.1016/j.jes.2023.12.010
Kemppinen, J., Lembrechts, J. J., Van Meerbeek, K., Carnicer, J., Chardon, N. I., Kardol, P., Lenoir, J., Liu, D., Maclean, I., Pergl, J., Saccone, P., Senior, R. A., Shen, T., Słowińska, S., Vandvik, V., von Oppen, J., Aalto, J., Ayalew, B., Bates, O. ... De Frenne, P. (2024). Microclimate, an important part of ecology and biogeography. Global Ecology and Biogeography, 33(6), Article e13834. https://doi.org/10.1111/geb.13834
Harðardóttir, S., Haile, J. S., Ray, J. L., Limoges, A., Van Nieuwenhove, N., Lalande, C., Grondin, P. L., Jackson, R., Skaar, K. S., Heikkilä, M., Berge, J., Lundholm, N., Massé, G., Rysgaard, S., Seidenkrantz, M. S., De Schepper, S., Lorenzen, E. D., Lovejoy, C. & Ribeiro, S. (2024). Millennial-scale variations in Arctic sea ice are recorded in sedimentary ancient DNA of the microalga Polarella glacialis. Communications Earth & Environment, 5, Article 25. https://doi.org/10.1038/s43247-023-01179-5
Aaskov, M. L., Ishimatsu, A., Nyengaard, J. R., Malte, H., Lauridsen, H., Ha, N. T. K., Do Thi, T. H. & Bayley, M. (2024). Modulation of gill surface area does not correlate with oxygen loss in Chitala ornata. Proceedings of the Royal Society B: Biological Sciences, 291(2033), Article 20241884. https://doi.org/10.1098/rspb.2024.1884
Ejaz, U., Khan, S. M., Jehangir, S., Ahmad, Z., Abdullah, A., Iqbal, M., Khalid, N., Nazir, A. & Svenning, J. C. (2024). Monitoring the Industrial waste polluted stream - Integrated analytics and machine learning for water quality index assessment. Journal of Cleaner Production, 450, Article 141877. https://doi.org/10.1016/j.jclepro.2024.141877
Chen, Y., Myers, J. A., Ordonez, A., Yu, J., Ye, J., Lin, F., Fang, S., Mao, Z. & Wang, X. (2024). Multiple processes jointly determine ecological uniqueness across forest plant life-forms in Northeast China. Journal of Biogeography, 51(7), 1133-1147. https://doi.org/10.1111/jbi.14817
Laidre, K. L., Zahn, M. J., Simon, M., Ladegaard, M., Stafford, K. M., Phillips, E., Moon, T., Stern, H. L. & Cohen, B. (2024). Narwhal (Monodon monoceros) associations with Greenland summer meltwater release. Ecosphere, 15(10), Article e70024. https://doi.org/10.1002/ecs2.70024
Groß, J., Franco-Santos, R. M., Virtue, P., Nichols, P. D., Totterdell, J., Marcondes, M. C. C., Garrigue, C., Botero-Acosta, N., Christiansen, F., Castrillon, J., Caballero, S. J., Friedlaender, A. S., Kawaguchi, S., Double, M. C., Bell, E. M., Makabe, R., Moteki, M., Hoem, N., Fry, B. ... Bengtson Nash, S. (2024). No distinct local cuisines among humpback whales: A population diet comparison in the Southern Hemisphere. Science of the Total Environment, 931, Article 172939. https://doi.org/10.1016/j.scitotenv.2024.172939
Fehr, V., Moretti, M., Pezzatti, G. B., Guidotti, G., Rasmann, S., Handa, I. T., Buitenwerf, R. & Svenning, J. C. (2024). Non-native palm affects arthropod communities and litter decomposition in an ongoing biome shift. Global Ecology and Conservation, 56, Article e03303. https://doi.org/10.1016/j.gecco.2024.e03303
Olsen, B. E., Normand, S., Svenning, J.-C., Rahbek, C., Kragh, T., Strange, N., Niels, M., Timmermann, K. & Kaae, B. C. (2024). Notat: Anvendelse af bundslæbende fiskeredskaber i beskyttede havområder - effekten på den marine biodiversitet. Biodiversitetsrådet.