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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Schneider, B. I. & Nygaard, N. (2002). Orthogonal functions, discrete variable representation, and generalized gauss quadratures. Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory, 106, 10773.
Nygaard, N., Bruun, G. M., Schneider, B. I., Clark, C. W. & Feder, D. L. (2004). Vortex line in a neutral finite-temperature superfluid Fermi gas. Physical Review A, 69, 053622.
Williams, J. E., Nygaard, N. & Clark, C. W. (2004). Phase diagrams for an ideal gas mixture of fermionic atoms and bosonic molecules. New J. Phys., 6, 123.
Williams, J. E., Nikuni, T., Nygaard, N. & Clark, C. W. (2004). Atom-molecule equilibration in a degenerate Fermi gas with resonant interactions. Journal of Physics B: Atomic, Molecular and Optical Physics, L351.
Schneider, B. I. & Nygaard, N. (2004). Discrete variable representation for singular Hamiltonians. Physical Review E, 70, 056706.
Morales, M. A., Nygaard, N., Williams, J. E. & Clark, C. W. (2005). Ultracold fermion cooling cycle using heteronuclear Feshbach resonances. New J. Phys., 7, 87.
Kistner, C., Winzer, T., Pizschke, A., Mulder, L., Sati, S., Kaneko, T., Tabata, S., Sandal, N. N., Stougaard, J., Webb, K. J., Szczyglowski, K. & Parniske, M. (2005). Seven Lotus japonicus genes required for transcriptional reprogramming of the root during fungal and bacterial symbiosis. Plant Cell, 17, 1-13.
Oblak, D., Petrov, P. G., Garrido Alzar, C. L., Tittel, W., Vershovski, A. K., Mikkelsen, J. K., Sørensen, J. L. & Polzik, E. S. (2005). Quantum-noise-limited interferometric measurement of atomic noise: Towards spin squeezing on the Cs clock transition. Physical Review A, 71, 043807.
Williams, J. E., Nygaard, N. & Clark, C. W. (2006). Theory of Feshbach molecule formation in a dilute gas during a magnetic field ramp. New Journal of Physics, 8(150).
Nygaard, N., Schneider, B. I. & Julienne, P. S. (2006). A two-channel R-matrix analysis of magnetic field induced Feshbach resonances. Physical Review A, 74, 042705.
Nygaard, N. (2005). Bose-Einstein Kondensation: Når atomer synger i kor. Kvant: Tidsskrift for Fysik og Astronomi, 1, 29.
Nygaard, N. (1999). Fysikkens varme emne. Berlingske Tidende.
Nygaard, N. (2001). Verdens mindste ekplosion. Berlingske Tidende.
Nygaard, N. (2001). Smukt eksperiment – Nobelpris. Berlingske Tidende.
Bødker, S. & Andersen, P. B. (2005). Complex Mediation. Journal of Human Computer Interaction, 20(4), 353-402.
Bødker, S. & Christiansen, E. (2006). Computer support for social awareness in flexible work. Computer Supported Cooperative Work (CSCW): The Journal of Collaborative Computing and Work Practices, 15(1), 1-28.
Bødker, S. & Petersen, A. B. (2005). Mediating the co-production of complex media products. Poster session presented at International ACM SIGGROUP Conference on Supporting Group Work, Sanibel Island, United States.
Biernacka, M., Danvy, O. & Sørensen, K. S. (2005). Extracting Evaluators from Proofs of Weak Head Normalization. In Electronic Notes in Theoretical Computer Science Elsevier Science Publishers.
Brodal, G. S., Demaine, E. D. & Munro, J. I. (2005). Fast Allocation and Deallocation with an Improved Buddy System. Acta Informatica, 41(4-5), 273-291. https://doi.org/10.1007/s00236-004-0159-6
Brodal, G. S., Fagerberg, R. & Moruz, G. (2005). On the Adaptiveness of Quicksort. In ALENEX05 (pp. 130-140). Society for Industrial and Applied Mathematics.
Arge, L., Brodal, G. S., Fagerberg, R. & Laustsen, M. (2005). Cache-Oblivious Planar Orthogonal Range Searching and Counting. In Proceedings of the twenty-first annual symposium on Computational geometry (pp. 160-169). Association for Computing Machinery. https://doi.org/10.1145/1064092.1064119
Brodal, G. S., Fagerberg, R. & Moruz, G. (2005). Cache-Aware and Cache-Oblivious Adaptive Sorting. In L. Caires, G. F. Italiano, L. Monteiro, C. Palamidessi & M. Yung (Eds.), Automata, Languages and Programming: 32nd International Colloquium, ICALP 2005, Lisbon, Portugal, July 11-15, 2005. Proceedings (pp. 576-588). Springer. https://doi.org/10.1007/11523468_47
Brodal, G. S. & Moruz, G. (2005). Tradeoffs Between Branch Mispredictions and Comparisons for Sorting Algorithms. In F. Dehne, A. Lopez-Ortiz & J.-R. Sack (Eds.), Algorithms and Data Structures: 9th International Workshop, WADS 2005, Waterloo, Canada, August 15-17, 2005. Proceedings (pp. 385-395). Springer. https://doi.org/10.1007/11534273_34
Brodal, G. S. & Fagerberg, R. (2006). Cache-oblivious String Dictionaries. In SODA '06 Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm (pp. 581-590). Association for Computing Machinery. https://doi.org/10.1145/1109557.1109621
Brodal, G. S. (2005). Finger Search Trees. In D. Mehta & S. Sahni (Eds.), Handbook of Data Structures and Applications CRC Press.
Arge, L., Brodal, G. S. & Fagerberg, R. (2005). Cache-Oblivious Data Structures. In D. Mehta & S. Sahni (Eds.), Handbook of Data Structures and Applications CRC Press.
Brodal, G. S. & Leonardi, S. (Eds.) (2005). ESA 2005: 13th Annual European Symposium: Springer LNCS.
Møller, A. & Schwartzbach, M. I. (2005). The Design Space of Type Checkers for XML Transformation Languages. In Database Theory - ICDT 2005: 10th International Conference, Edinburgh, UK, January 5-7, 2005. Proceedings (pp. 17-36). Springer. https://doi.org/10.1007/978-3-540-30570-5_2
Kristoffersen, T. K. (2006). Deviation measure in two-stage stochastic linear programming. Mathematical Methods of Operations Research, 62(2), 255-274.
Svenning, J.-C., Sanjines A., A., Normand, S., Vormisto, J. & Balslev, H. (2005). Environmental and spatial controls of palm (Arecaceae) species distributions at local to regional scales in neotropical forests. Poster session presented at The Palms - An International Symposium on the Biology of the Palm Family, The Linnean Society and The Royal Botanic Gardens, London and Kew, United Kingdom.
Bjorholm, S. W., Svenning, J.-C., Skov, F. & Balslev, H. (2006). Which factors control the distribution of palms in the Americas?. Poster session presented at ISOBIS Annual Meeting, 2006, Copenhagen, Denmark.
Knudsen, H. (2003). Til Nationens Dygtiggørelse: - den tekniske forskning mellem stat, industri og privat filantropi 1916-1937. Erhvervshistorisk årbog: meddelelser fra Erhvervsarkivet, 52, 48-97.
Knudsen, H. (2006). Politik, penge og forskningsvilkår. In Videnskab uden grænser: Dansk Naturvidenskabs Historie, Bind 4 (Vol. 4, pp. 262-279). Aarhus Universitetsforlag.
Knudsen, H. & Nielsen, K. H. (2006). Forskning uden for universiteterne. In H. Nielsen & K. Hvidtfelt Nielsen (Eds.), Viden uden grænser 1920-1970: Dansk Naturvidenskabs Historie, Bind 4 (Vol. 4, pp. 259-79). Aarhus Universitetsforlag.
Knudsen, H. (1999). Pandoras Æske: Anmeldelse af "Verden om tænkningen", Philosophia årg. 25, 3-4. Slagmark: tidsskrift for idéhistorie , (28-29), 191-194.
Bardram, J. E., Kjær, R. E. & Pedersen, M. Ø. (2003). Context-Aware User Authentication - Supporting Proximity-Based Login in Pervasive Computing. In Proceedings of Ubicomp 2003: Ubiquitous Computing (2864 ed., pp. 107-123). Springer.
Bahner, K. (2005). Design of a High Precision Control System. In Design of a High Precision Control System McMaster University.
Bahner, K. (2005). Report to SNEAP 2004. In Report to SNEAP 2004 McMaster Univeristy.
Bødker, S. & Nielsen, M. M. (2004). Desktop Computing. Australian Journal of Information Systems, 88-101.

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Senty, P., Guzinski, R., Grogan, K., Buitenwerf, R., Ardö, J., Eklundh, L., Koukos, A., Tagesson, T. & Munk, M. (2024). Fast Fusion of Sentinel-2 and Sentinel-3 Time Series over Rangelands. Remote Sensing, 16(11), Article 1833. https://doi.org/10.3390/rs16111833
Marciszak, A., Mackiewicz, P., Borówka, R. K., Capalbo, C., Chibowski, P., Gąsiorowski, M., Hercman, H., Cedro, B., Kropczyk, A., Gornig, W., Moska, P., Nowakowski, D., Ratajczak-Skrzatek, U., Sobczyk, A., Sykut, M. T., Zarzecka-Szubińska, K., Kovalchuk, O., Barkaszi, Z., Stefaniak, K. & Mazza, P. P. A. (2024). Fate and preservation of the late pleistocene cave bears from Niedźwiedzia Cave in Poland, through taphonomy, pathology, and geochemistry. Scientific Reports, 14(1), Article 9775. https://doi.org/10.1038/s41598-024-60222-3
Brodnicke, O. B., Jensen, M. R., Thomsen, P. F., Brorly, T., Andersen, B. L., Knudsen, S. W., Præbel, K., Brandl, S. J., Sweet, M. J., Møller, P. R. & Worsaae, K. (2024). Field collections and environmental DNA surveys reveal topographic complexity of coral reefs as a predictor of cryptobenthic biodiversity across small spatial scales. Environmental DNA, 6(3), Article e545. https://doi.org/10.1002/edn3.545
Olsen, B. E., Svenning, J.-C., Normand, S., Rahbek, C., Niels, M., Kragh, T., Strange, N., Kaae, B. C. & Timmermann, K. (2024). Finansiering af Danmarks biodiversitetsindsats: Perspektiver på den offentlige og private sektors rolle og bidrag. Biodiversitetsrådet.
Vera-Puerto, I. L., Sarkar, S., Moris, G., Valdés, H., Quiroz, M., López, J., Encina, F., Molle, P. & Arias, C. A. (2024). First report of components responsible for odor sensation from a vertical flow constructed wetland treating combined sewer overflow. Environmental Science: Water Research and Technology, 10(9), 2013-2019. https://doi.org/10.1039/d4ew00303a
He, F., Svenning, J. C., Chen, X., Tockner, K., Kuemmerle, T., le Roux, E., Moleón, M., Gessner, J. & Jähnig, S. C. (2024). Freshwater megafauna shape ecosystems and facilitate restoration. Biological Reviews, 99(4), 1141-1163. https://doi.org/10.1111/brv.13062
Montana, J., Heger, T., Kelz, R., Bischoff, A., Buitenwerf, R., Eser, U., Kung, K., Sattler, J., Schweiger, A. H., Searle, A., Teixeira, L. H., Travassos-Britto, B. & Higgs, E. (2024). From novel ecosystems to novel natures. GAIA: Ecological Perspectives for Science and Society, 33(1), 146-151. https://doi.org/10.14512/gaia.33.1.6
Villalva, P., Arroyo-Correa, B., Calvo, G., Homet, P., Isla, J., Mendoza, I., Moracho, E., Quintero, E., Rodríguez-Sánchez, F. & Jordano, P. (2024). FRUGIVORY CAMTRAP: A dataset of plant–animal interactions recorded with camera traps. Ecology, 105(11), Article e4424. https://doi.org/10.1002/ecy.4424
Wooster, EI. F., Lundgren, EJ., Balisi, M., Lemoine, RT., Sandom, CJ., Svenning, J. C., Rowan, J., Jolly, CJ., Linley, GD., Cowan, M. A., Wright, N., Westaway, D., Nimmo, D., Nichols, H. & Middleton, OS. (2024). Functional Traits of the World's Late Quaternary Terrestrial Mammalian Predators. Global Ecology and Biogeography, 33(12), Article e13909. https://doi.org/10.1111/geb.13909
Davoli, M. & Svenning, J. C. (2024). Future changes in society and climate may strongly shape wild large-herbivore faunas across Europe. Philosophical Transactions of the Royal Society B: Biological Sciences, 379(1902), Article 20230334. https://doi.org/10.1098/rstb.2023.0334
Joyce, W., He, K., Zhang, M., Ogunsola, S., Wu, X., Joseph, K. T., Bogomolny, D., Yu, W., Springer, M. S., Xie, J., Signore, A. V. & Campbell, K. L. (2024). Genetic excision of the regulatory cardiac troponin I extension in high-heart rate mammal clades. Science (New York, N.Y.), 385(6716), 1466-1471. https://doi.org/10.1126/science.adi8146
Georgalas, M. D., Hansen, L. S., Laursen, S. F., Bahrndorff, S., Sørensen, J. G., Kargo, M., Kristensen, T. N., Guldbrandtsen, B. & Nielsen, H. M. (2024). Genetic parameters for house fly larval performance in two dietary environments. In Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (pp. 634-634). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf
Vogel, A. L., Thompson, K. J., Straub, D., Musat, F., Gutierrez, T. & Kleindienst, S. (2024). Genetic redundancy in the naphthalene-degradation pathway of Cycloclasticus pugetii strain PS-1 enables response to varying substrate concentrations. FEMS Microbiology Ecology, 100(6), Article fiae060. https://doi.org/10.1093/femsec/fiae060
Méndez, L., Barratt, C. D., Durka, W., Kissling, W. D., Eiserhardt, W. L., Baker, W. J., Randrianasolo, V. & Onstein, R. E. (2024). Genomic signatures of past megafrugivore-mediated dispersal in Malagasy palms. Journal of Ecology, 112(7), 1583-1598. https://doi.org/10.1111/1365-2745.14340
Luize, B. G., Bauman, D., ter Steege, H., Palma-Silva, C., do Amaral, I. L., de Souza Coelho, L., de Almeida Matos, F. D., de Andrade Lima Filho, D., Salomão, R. P., Wittmann, F., Castilho, C. V., de Jesus Veiga Carim, M., Guevara, J. E., Phillips, O. L., Magnusson, W. E., Sabatier, D., Revilla, J. D. C., Molino, J. F., Irume, M. V. ... Dexter, K. G. (2024). Geography and ecology shape the phylogenetic composition of Amazonian tree communities. Journal of Biogeography, 51(7), 1163-1184. https://doi.org/10.1111/jbi.14816
Fang, Z., Zhang, W., Wang, L., Schurgers, G., Ciais, P., Peñuelas, J., Brandt, M., Yang, H., Huang, K., Shen, Q. & Rasmus, F. (2024). Global increase in the optimal temperature for the productivity of terrestrial ecosystems. Communications Earth and Environment, 5(1), Article 466. https://doi.org/10.1038/s43247-024-01636-9
Li, Y., Svenning, J. C., Zhou, W., Zhu, K., Abrams, J. F., Lenton, T. M., Ripple, W. J., Yu, Z., Teng, S. N., Dunn, R. R. & Xu, C. (2024). Green spaces provide substantial but unequal urban cooling globally. Nature Communications, 15, Article 7108. https://doi.org/10.1038/s41467-024-51355-0
Schultz, E. D., Thom, G., Zuquim, G., Hickerson, M. J., Tuomisto, H. & Ribas, C. C. (2024). Habitat specialization predicts demographic response and vulnerability of floodplain birds in Amazonia. Molecular Ecology, 33(3), Article e17221. https://doi.org/10.1111/mec.17221
Findlay, C. R., Coomber, F. G., Dudley, R., Bland, L., Calderan, S. V., Hartny-Mills, L., Leaper, R., Tougaard, J., Merchant, N. D., Risch, D. & Wilson, B. (2024). Harbour porpoises respond to chronic acoustic deterrent device noise from aquaculture. Biological Conservation, 293, Article 110569. https://doi.org/10.1016/j.biocon.2024.110569
Barbero-Palacios, L., Barrio, I. C., García Criado, M., Kater, I., Petit Bon, M., Kolari, T. H. M., Bjørkås, R., Trepel, J., Lundgren, E., Björnsdóttir, K., Hwang, B. C., Bartra-Cabré, L., Defourneaux, M., Ramsay, J., Lameris, T. K., Leffler, A. J., Lock, J. G., Kuoppamaa, M. S., Kristensen, J. A. ... Soininen, E. M. (2024). Herbivore diversity effects on Arctic tundra ecosystems: a systematic review. Environmental Evidence, 13(1), Article 6. https://doi.org/10.1186/s13750-024-00330-9
Svensson, E. I., Schou, M. F., Melgar, J., Waller, J., Engelbrecht, A., Brand, Z., Cloete, S. & Cornwallis, C. K. (2024). Heritable variation in thermal profiles is associated with reproductive success in the world’s largest bird. Evolution Letters, 8(2), 200-211. Article qrad049. https://doi.org/10.1093/evlett/qrad049
Pascual, A., Álvarez, J. A., de la Varga, D., Arias, C. A., Van Oirschot, D., Kilian, R. & Soto, M. (2024). Horizontal flow aerated constructed wetlands for municipal wastewater treatment: The influence of bed depth. Science of the Total Environment, 908, Article 168257. https://doi.org/10.1016/j.scitotenv.2023.168257
Schnitzler, J. G., De Soto, N. A., André, M., Von Benda-Beckmann, S., Caro, P. P., Findlay, C. R., Frankish, C. K., Johnson, M. P., De Jong, C., Madsen, P. T., Marin, O., Nabe-Nielsen, J., Nachtsheim, D. A., Rojano-Doñate, L., Rubio, C., Slabbekoorn, H., Solé, M., Teilmann, J., Tougaard, J. ... Siebert, U. (2024). How SATURN is studying the impact of ship noise on the behaviour, health, energetics, and populations of aquatic organisms. In 53rd International Congress and Exposition on Noise Control Engineering, Internoise 2024 (pp. 5287-5295). Societe Francaise d'Acoustique. https://doi.org/10.3397/in_2024_3568
Ferreira, A. S. A., Langangen, Ø., Yaragina, N. A., Prokopchuk, I. P. & Durant, J. M. (2024). How the spatio-temporal overlap of cod, haddock, and capelin larvae affects their recruitment in the Norwegian–Barents Sea system. Marine Ecology Progress Series, 734, 79-90. https://doi.org/10.3354/meps14564
Villalva Aguilar, P. (2024). Human activities change ecological interaction rules among carnivores. Poster session presented at Biology Annual Conference Aarhus University, Aarhus, Denmark.
Nikulina, A., MacDonald, K., Zapolska, A., Serge, M. A., Roche, D. M., Mazier, F., Davoli, M., Svenning, J. C., van Wees, D., Pearce, E. A., Fyfe, R., Roebroeks, W. & Scherjon, F. (2024). Hunter-gatherer impact on European interglacial vegetation: A modelling approach. Quaternary Science Reviews, 324, Article 108439. https://doi.org/10.1016/j.quascirev.2023.108439
Schrøder, T. S. O., Gonçalves, F., Vollstädt, M. G. R., Zhang, T., Jensen, R. D., Tarazona-Tubens, F. L., Kim, S., Galetti, M., Simmons, B. I., Kaiser-Bunbury, C. N., Temeles, E. J. & Dalsgaard, B. (2024). Hurricane-induced pollinator shifts in a tightly coadapted plant–hummingbird mutualism. New Phytologist, 244(1), 16-20. https://doi.org/10.1111/nph.19938
He, F., Zarfl, C., Tockner, K., Olden, J. D., Campos, Z., Muniz, F., Svenning, J. C. & Jähnig, S. C. (2024). Hydropower impacts on riverine biodiversity. Nature Reviews Earth and Environment, 5(11), 755-772. https://doi.org/10.1038/s43017-024-00596-0
Acosta, A. C., Arias, C. A., Biller, P., Wittig, N. K., Baragau, I. A., Alhnidi, M. J., Ravenni, G., Sárossy, Z., Benedini, L., Abramiuc, L. E., Popescu, D. G., Negassa, W., Marulanda, V. F., Müller-Stöver, D. S. & Brix, H. (2024). Hydrothermal carbonization and pyrolysis in wetland engineering: Carbon sequestration, phosphorus recovery, and structural characterization of willow-based chars with X-ray μ-computed tomography. Chemical Engineering Journal, 492, Article 151916. https://doi.org/10.1016/j.cej.2024.151916