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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Schultz, U. P., Burgaard, K., Christensen, F. G. & Knudsen, J. L. (2003). Compiling Java for low-end embedded systems. In Proceedings of the 2003 ACM SIGPLAN conference on Languages, compilers, and tools for embedded systems (pp. 42-50). Association for Computing Machinery.
Schultz, U. P., Lawall, J. L. & Consel, C. (2003). Automatic program specialization for Java. ACM Transactions on Programming Languages and Systems, 25(4), 452-499.
Schwartzbach, M. I. (2003). Rapport om datalogi i gymnasiet. Undervisningsministeriet.
Srba, J., Guldstrand Larsen, K. (Ed.) & Nielsen, M. (Ed.) (2001). On the Power of Labels in Transition Systems. In Lecture Notes in Computer Science: Proceedings of the 12th International Conference on Concurrency Theory (2154 of Lecture Notes in Computer Science ed., Vol. 2154/2001, pp. 277-291). Springer.
Brodal, G. S., Fagerberg, R., Pedersen, C. N. S., Östlin, A., Orejas, F. (Ed.), Spirakis, P. G. (Ed.) & Leeuwen, J. V. (Ed.) (2001). The Complexity of Constructing Evolutionary Trees Using Experiments. In Lecture Notes In Computer Science; Vol. 2076: Proceedings of the 28th International Colloquium on Automata, Languages and Programming (2076 of Lecture Notes in Computer Science ed., Vol. 2076/2001, pp. 140-151). Springer.
Thomsen, R., Guervós, J. J. M. (Ed.), Adamidis, P. (Ed.), Beyer, H.-G. (Ed.), Fernández-Villacañas, J. L. (Ed.) & Schwefel, H.-P. (Ed.) (2002). Evolving the Topology of Hidden Markov Models using Evolutionary Algorithms. In Proceedings of the 7th International Conference on Parallel Problem Solving from Nature: Parallel Problem Solving from Nature --- PPSN VII (Lecture Notes in Computer Science ed., Vol. 2439/2002, pp. 861-870). Springer.
Thomsen, R. (2003). Flexible Ligand Docking Using Differential Evolution. In R. Sarker, R. Reynolds, H. Abbass, K. Chen Tan, B. McKay, D. Essam & T. Gedeon (Eds.), The 2003 Congress on Evolutionary Computation, CEC '03 (Vol. 4, pp. 2354-2361). IEEE Press.
Thomsen, R., Boomsma, W., Raidl, G. R. (Ed.), Cagnoni, S. (Ed.), Branke, J. (Ed.), Corne, D. (Ed.), Drechsler, R. (Ed.), Jin, Y. (Ed.), Johnson, C. G. (Ed.), Machado, P. (Ed.), Marchiori, E. (Ed.), Rothlauf, F. (Ed.), Smith, G. D. (Ed.) & Squillero, G. (Ed.) (2004). Multiple Sequence Alignment Using SAGA: Investigating the Effects of Operator Scheduling, Population Seeding, and Crossover Operators. In Applications of Evolutionary Computing (3005 i Lecture Notes in Computer Science ed., pp. 113-122). Springer.
Thomsen, R., Fogel, G. B., Krink, T., Fogel, D. B. (Ed.), Yao, X. (Ed.), Greenwood, G. (Ed.), Iba, H. (Ed.), Marrow, P. (Ed.) & Shackleton, M. (Ed.) (2002). A Clustal Alignment Improver Using Evolutionary Algorithms. In Proceedings of the 2002 Congress on evolutionary Computation, 2002. CEC '02 (Vol. 1, pp. 121-126). IEEE Press.
Thomsen, R., Fogel, G. B. & Krink, T. (2003). Improvement of Clustal-Derived Sequence Alignments with Evolutionary Algorithms. In 2003 Congress on Evolutionary Computation (pp. 1499-1507). IEEE Press.
Thomsen, R., Krink, T., Guervós, J. J. M. (Ed.), Adamidis, P. (Ed.), Beyer, H.-G. (Ed.), Fernández-Villacañas, J.-L. (Ed.) & Schwefel, H.-P. (Ed.) (2002). Self-Adaptive Operator Scheduling using the Religion-Based EA. In Lecture Notes in Computer Science: Parallel Problem Solving from Nature - PPSN VII (2439 of Lecture Notes in Computer Science ed., Vol. 2439/-1 / 2002, pp. 214-223). Springer.
Torgersen, M. (2002). Inheritance is Specialisation. In A. P. Black, E. Ernst, P. Grogono & M. Sakkinen (Eds.), Object-oriented Technology ECOOP 2002 Workshop Reader (Vol. 12, pp. 95-101). Springer LNCS.
Torgersen, M. & Odersky, M. (Ed.) (2004). The Expression Problem Revisited - Four New Solutions using Generics. In Proceedings of the 18th European Conference on Object-Oriented Programming (ECOOP'04) (3086 i Lecture Notes in Computer Science ed., pp. 123-146). Springer.
Torgersen, M. (2001). Unifying Abstractions. (DAIMI PhD Dissertation PD-01-2 ed.) Department of Computer Science.
Ursem, R. K., Filipic, B. & Krink, T. (2002). Exploring the Performance of an Evolutionary Algorithm for Greenhouse Control. Journal of Computing and Information Technology, 10(3), 195-201.
Ursem, R. K., Krink, T., Fogel, D. B. (Ed.), Yao, X. (Ed.), Greenwood, G. (Ed.), Iba, H. (Ed.), Marrow, P. (Ed.) & Shackleton, M. (Ed.) (2002). Genetic Programming with Smooth Operators for Arithmetic Expressions: Diviplication and Subdition. In Proceedings of the Evolutionary on Computation 2002.: CEC'02 (Vol. 2, pp. 1372-1377). IEEE Computer Society Press.
Ursem, R. K., Krink, T. & Filipic, B. (2002). A Numerical Simulator for a Crop-Producing Greenhouse. EVALife Technical Report, (2002-01).
Ursem, R. K., Krink, T., Jensen, M. T. & Michalewicz, Z. (2002). Analysis and Modeling of Control Tasks in Dynamic Systems. I E E E Transactions on Evolutionary Computation, 6(4), 378-389.
Varacca, D., Völzer, H., Winskel, G., Gardner, P. (Ed.) & Yoshida, N. (Ed.) (2004). Probabilistic Event Structures and Domains. In Ikke angivet (3170 i Lecture Notes in Computer Science ed., pp. 481-496). Springer.
Vesterstrøm, J. S. (2003). Physical Mapping Using Simulated Annealing and Evolutionary Algorithms. In Proceedings of the IEEE Congress on Evolutionary Computation, CEC 2003, 8 -12 December 2003, Canberra, Australien (Vol. 1, pp. 327- 334). IEEE Press.
Vesterstrøm, J. S. & Riget, J. (2002). A Diversity-Guided Particle Swarm Optimizer - the ARPSO. EVALife Technical Report, (2002-02).
Vesterstrøm, J. S., Riget, J., Krink, T., Fogel, D. B. (Ed.), Yao, X. (Ed.), Greenwood, G. (Ed.), Iba, H. (Ed.), Marrow, P. (Ed.) & Shackleton, M. (Ed.) (2002). Division of Labor in Particle Swarm Optimisation. In Ikke angivet (pp. 1570-1575). IEEE Press.
Wagealla, W., Carbone, M., English, C., Terzis, S., Lowe, H., Nixon, P., Dimitrakos, T. (Ed.) & Martinelli, F. (Ed.) (2004). A Formal Model for Trust Lifecycle Management. In Proceedings of IEEE International Conference on Software Engineering and Formal Methods (SEFM '03), 2003. (pp. 181-192). IIT-CNR.
Wells, L. M., Boukerche, A. (Ed.), Das, S. K. (Ed.) & Majumdar, S. (Ed.) (2002). Performance Analysis Using Coloured Petri Nets. In Proceedings, 10th IEEE International Symposium on Modeling, Analysis and Simulation of Computer and Telecommunications Systems, 2002 (pp. 217-221). IEEE Computer Society Press.
Wells, L., Christensen, S., Kristensen, L. M., Mortensen, K. H., German, R. (Ed.) & Haverkort, B. (Ed.) (2001). Simulation Based Performance Analysis of Web Servers. In Proceedings of 9th International Workshop on Petri Nets and Performance Models (pp. 59-68). IEEE Computer Society Press.
Westergaard, M. & Kindler, E. (Ed.) (2004). Towards a High-level Petri Net Type Type Definition. In Proceeding of the Workshop on the Definition, Implementation and Application of a Standard Interchange Format for Petri Nets
Winskel, G., Ésik, Z. (Ed.) & Ingólfsdóttir, A. (Ed.) (2002). Calculus for Categories. In Fixed Points in Computer Science (NS-02-2 of Notes Series ed., pp. 20-21).
Winskel, G., Ehrhard, T. (Ed.), Girard, J. (Ed.), Ruet, P. (Ed.) & Scot, P. (Ed.) (2004). Linearity and Nonlinearity in Distributed Computation. In Linear Logic in Computer Science (316 of London Math. Soc. Lecture Note Series ed., pp. 151-188). Cambridge University Press.
Winskel, G. (2003). Presheaf models for CCS-like languages. Theoretical Computer Science, 300(1-3), 47-89.
Winskel, G., Zappa Nardelli, F., Lévy, J. (Ed.), Mayr, E. (Ed.) & Mitchell, J. (Ed.) (2004). New-HOPLA: A Higher-Order Process Language with Name Generation. In Ikke angivet (pp. 521-534). Kluwer Academic Publishers.
Mogensen, P. H. (Ed.) (2004). Documentation of Appliances & Interaction Devices: Deliverable 16. In EU,IST, FET, DC project, Workspace: Distributed Work support through component based SPAtial Computing Environments (Deliverable 16 ed., Vol. WS-UAA-20, pp. 1-22). Datalogisk Institut, Aarhus Universitet. http://www.daimi.au.dk/workspace/Deliverables/WS-D16-v1-0.pdf
Workspace & Mogensen, P. H. (Ed.) (2003). Documentation of Infrastructure. In EU,IST, FET, DC project, Workspace: Distributed Work support through component based SPAtial Computing Environments  IST-2000-25290 (17 - WS-UAA-21 ed., Vol. WS-D17-v1-0, pp. 1-28). Datalogisk Institut. http://www.daimi.au.dk/workspace/Deliverables/WS-D17-v1-0.pdf
Workspace & Mogensen, P. H. (Ed.) (2003). Final Demonstrator Status: Deliverable 5: Status report, month 36. In EU,IST, FET, DC project, Workspace: IST-2000-25290:Distributed Work support through component based SPAtial Computing Environments (Deliverable 5 ed., Vol. WS-D5-v1, pp. 1-46). Datalogisk Institut. http://www.daimi.au.dk/workspace/Deliverables/WS-D5-v1.0.pdf
Workspace & Mogensen, P. H. (Ed.) (2003). Final Evaluations: Deliverable 18; In EU,IST, FET, DC project, Workspace: Distributed Work support through component based SPAtial Computing Environments (Deliverable 18 ed., Vol. WS-UAA-22, pp. 1-29). Datalogisk Institut. http://www.daimi.au.dk/workspace/Deliverables/WS-D18-v1-0.pdf
Workspace & Mogensen, P. H. (Ed.) (2003). Final Project Report. In EU,IST, FET, DC project, Workspace: Distributed Work support through component based SPAtial Computing Environments (Final Report ed., Vol. WS-UAA-23, pp. 1-7). Datalogisk Institut. http://www.daimi.au.dk/workspace/Deliverables/WS-FinalReportV1-0.pdf
Zellweger, P. T., Bouvin, N. O., Jehøj, H. & Mackinlay, J. D. (2001). Fluid Annotations in a Open World. In K. Grønbæk, H. Davis & Y. Douglas (Eds.), Proceedings of the twelfth ACM conference on Hypertext and Hypermedia (pp. 9-18). Association for Computing Machinery. https://doi.org/10.1145/504216.504224
Zimmer, P. (2004). Using Ambients to Control Resources. International Journal of Information Security, 2(3-4), 126-144.
van den Brand, M., Iversen, J., Mosses, P. D., Hedin, G. (Ed.) & Van Wyk, E. (Ed.) (2004). An Action Environment. In Proceedings of the Fourth Workshop on Language Descriptions, Tools, and Applications (Vol. 110, pp. 149-168). Elsevier.
van den Brand, M., Iversen, J., Mosses, P. D., Hedin, G. (Ed.) & Van Wyk, E. (Ed.) (2004). The Action Environment: Tool Demonstration. In Ikke angivet (pp. 177-180). Elsevier.
Ackermann, M. D., Pedersen, T. M., Henriksen, B. L. M., Robach, O., Bobaru, S. C., Popa, I., Quiros, C., Kim, H., Hammer, B., Ferrer, S. & Frenken, J. W. M. (2005). Structure and reactivity of surface oxides on Pt(110) during catalytic CO Oxidation. Physical Review Letters, 95.
Aerts, C., Baglin, A., Christensen-Dalsgaard, J., Goupil, M., Houdek, G., Kjeldsen, H., Kollath, Z., Kurtz, D., Lebreton, Y., Maceroni, C., Noels, A., Schwarzenberg-Czerny, A., Skoda, P., Solano, E. & Thompson, M. J. (2004). "ENEAS": the European Network of Excellence in AsteroSeismology. In Second Eddington Workshop: Stellar structure and habitable planet finding. 9.-11. april 2003 (pp. 247-250)
Aerts, C., Handler, G., Arentoft, T., Vandenbussche, B., Medupe, R. & Sterken, C. (2002). The delta Scuti star XX Pyx as an ellipsoidal variable. Royal Astronomical Society. Monthly Notices, 333, 35-39.
Aerts, C. M., Strange, P., Horne, M., Temmerman, W. M., Szotek, Z. & Svane, A. (2004). Half-metallic to insulating behavior of rare-earth nitrides. Physical Review B, 69, 045115-1.
Africh, C., Esch, F., Li, W. X., Corso, M., Hammer, B., Rosei, R. & Comelli, G. (2004). Two-step reaction on a strained, nanoscale segmented surface. Physical Review Letters, 93(12), 126104. http://www.phys.au.dk/~hammer/77.pdf
Afrosimov, V. V., Basalaev, A. A., Fastrup, B., Horsdal, E., Panov, M. N., Tulub, A. V. & Yakovlev, D. S. (2003). Ionization and fragmentation of Freon-12 molecules in collisions with protons. J. Phys. B: At. Mol. Opt. Phys., 36, 1991-2000.

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Izadi, S., Aguilar de Soto, N., Constantine, R. & Johnson, M. (2022). Feeding tactics of resident Bryde's whales in New Zealand. Marine Mammal Science, 38(3), 1104-1117. https://doi.org/10.1111/mms.12918
Christiansen, F., Uhart, M. M., Bejder, L., Clapham, P., Ivashchenko, Y., Tormosov, D., Lewin, N. & Sironi, M. (2022). Fetal growth, birth size and energetic cost of gestation in southern right whales. Journal of Physiology, 600(9), 2245-2266. https://doi.org/10.1113/JP282351
Thomsen, E. M., Sonne, A., Bertelsen, M., Vermeulen, E., Ganswindt, A., Wang, T. & Ochala, J. (2022). Fine-regulation of myosin relaxed states in vertebrate muscle. The FASEB Journal, 36(S1). https://doi.org/10.1096/fasebj.2022.36.S1.R4611
Menail, H. A., Cormier, S. B., Ben Youssef, M., Jørgensen, L. B., Vickruck, J. L., Morin, P., Boudreau, L. H. & Pichaud, N. (2022). Flexible Thermal Sensitivity of Mitochondrial Oxygen Consumption and Substrate Oxidation in Flying Insect Species. Frontiers in Physiology, 13, Article 897174. https://doi.org/10.3389/fphys.2022.897174
Mikkelsen, P. S. (2022). Gael Hamke Bugt - Young Sund. (1 ed.) Xsirius Books.
Ivy, C. M., Wearing, O. H., Natarajan, C., Schweizer, R. M., Gutiérrez-Pinto, N., Velotta, J. P., Campbell-Staton, S. C., Petersen, E. E., Fago, A., Cheviron, Z. A., Storz, J. F. & Scott, G. R. (2022). Genetic variation in haemoglobin is associated with evolved changes in breathing in high-altitude deer mice. Journal of Experimental Biology, 225(2), Article jeb243595. https://doi.org/10.1242/jeb.243595
Liu, S., Tengstedt, A. N. B., Jacobsen, M. W., Pujolar, J. M., Jónsson, B., Lobón-Cervià, J., Bernatchez, L. & Hansen, M. M. (2022). Genome-wide methylation in the panmictic European eel (Anguilla anguilla). Molecular Ecology, 31(16), 4286-4306. https://doi.org/10.1111/mec.16586
Lembrechts, J. J., van den Hoogen, J., Aalto, J., Ashcroft, M. B., De Frenne, P., Kemppinen, J., Kopecký, M., Luoto, M., Maclean, I. M. D., Crowther, T. W., Bailey, J. J., Haesen, S., Klinges, D. H., Niittynen, P., Scheffers, B. R., Van Meerbeek, K., Aartsma, P., Abdalaze, O., Abedi, M. ... Lenoir, J. (2022). Global maps of soil temperature. Global Change Biology, 28(9), 3110-3144. https://doi.org/10.1111/gcb.16060
Tietje, M., Antonelli, A., Baker, W. J., Govaerts, R., Smith, S. A. & Eiserhardt, W. L. (2022). Global variation in diversification rate and species richness are unlinked in plants. Proceedings of the National Academy of Sciences (PNAS), 119(27), Article e2120662119. https://doi.org/10.1073/pnas.2120662119
Vuorinen, K. E. M., Austrheim, G., Tremblay, J. P., Myers-Smith, I. H., Hortman, H. I., Frank, P., Barrio, I. C., Dalerum, F., Björkman, M. P., Björk, R. G., Ehrich, D., Sokolov, A., Sokolova, N., Ropars, P., Boudreau, S., Normand, S., Prendin, A. L., Schmidt, N. M., Pacheco-Solana, A. ... Speed, J. D. M. (2022). Growth rings show limited evidence for ungulates' potential to suppress shrubs across the Arctic. Environmental Research Letters, 17(3), Article 034013. https://doi.org/10.1088/1748-9326/ac5207
Guo, W. Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T., de Frutos, A., Dias, A. S. ... Svenning, J. C. (2022). High exposure of global tree diversity to human pressure. Proceedings of the National Academy of Sciences (PNAS), 119(25), Article e2026733119. https://doi.org/10.1073/pnas.2026733119
Vickaryous, M., Williams, C., Willan, G., Kirby, A., Herrel, A., Kever, L., Moazen, M., Marghoub, A., Rai, S., Abzhanov, A. & Evans, S. (2022). Histological Diversity And Evolution Of Lizard Osteoderms. The FASEB Journal, 36(S1). https://doi.org/10.1096/fasebj.2022.36.S1.R3199
Nguanchoo, V., Wangpakapattanawong, P., Balslev, H. & Inta, A. (2022). Hmong Medicinal Plant Knowledge Transmission and Retention in Social Modernity. Human Ecology, 50(3), 419-433. https://doi.org/10.1007/s10745-022-00326-4
Parthasarathy, B., Müller, M., Bilde, T. & Schneider, J. M. (2022). Hunger state and not personality determines task participation in a spider society. Animal Behaviour, 190, 143-152. https://doi.org/10.1016/j.anbehav.2022.06.002
Dugal, L., Thomas, L., Jensen, M. R., Sigsgaard, E. E., Simpson, T., Jarman, S., Thomsen, P. F. & Meekan, M. (2022). Individual haplotyping of whale sharks from seawater environmental DNA. Molecular Ecology Resources, 22(1), 56-65. https://doi.org/10.1111/1755-0998.13451
Prendin, A. L., Normand, S., Carrer, M., Bjerregaard Pedersen, N., Matthiesen, H., Westergaard‐Nielsen, A., Elberling, B., Treier, U. A. & Hollesen, J. (2022). Influences of summer warming and nutrient availability on Salix glauca L. growth in Greenland along an ice to sea gradient. Scientific Reports, 12(1), Article 3077. https://doi.org/10.1038/s41598-022-05322-8
Hirtle, N. O., Stepanuk, J. E. F., Heywood, E. I., Christiansen, F. & Thorne, L. H. (2022). Integrating 3D models with morphometric measurements to improve volumetric estimates in marine mammals. Methods in Ecology and Evolution, 13(11), 2478-2490. https://doi.org/10.1111/2041-210X.13962
Guasch, H., Bernal, S., Bruno, D., Almroth, B. C., Cochero, J., Corcoll, N., Cornejo, D., Gacia, E., Kroll, A., Lavoie, I., Ledesma, J. L. J., Lupon, A., Margenat, H., Morin, S., Navarro, E., Ribot, M., Riis, T., Schmitt-Jansen, M., Tlili, A. & Martí, E. (2022). Interactions between microplastics and benthic biofilms in fluvial ecosystems: Knowledge gaps and future trends. Freshwater Science, 41(3), 442-458. https://doi.org/10.1086/721472
Counsell, C. W. W., Coleman, R. R., Lal, S. S., Bowen, B. W., Franklin, E. C., Neuheimer, A. B., Powell, B. S., Toonen, R. J., Donahue, M. J., Hixon, M. A. & McManus, M. A. (2022). Interdisciplinary analysis of larval dispersal for a coral reef fish: opening the black box. Marine Ecology Progress Series, 684, 117-132. https://doi.org/10.3354/meps13971
Noer, N. K., Ørsted, M., Schiffer, M., Hoffmann, A. A., Bahrndorff, S. & Kristensen, T. N. (2022). Into the wild - a field study on the evolutionary and ecological importance of thermal plasticity in ectotherms across temperate and tropical regions. Philosophical Transactions of the Royal Society B: Biological Sciences, 377(1846), Article 20210004. https://doi.org/10.1098/rstb.2021.0004
Stief, P., Schauberger, C., Lund, M. B., Greve, A., Abed, R. M. M., Al-Najjar, M. A. A., Attard, K., Bonaglia, S., Deutzmann, J. S., Franco-Cisterna, B., García-Robledo, E., Holtappels, M., John, U., Maciute, A., Magee, M. J., Pors, R., Santl-Temkiv, T., Scherwass, A., Sevilgen, D. S. ... Kamp, A. (2022). Intracellular nitrate storage by diatoms can be an important nitrogen pool in freshwater and marine ecosystems. Communications Earth & Environment, 3(1), Article 154. https://doi.org/10.1038/s43247-022-00485-8
Houstin, A., Zitterbart, D. P., Heerah, K., Eisen, O., Planas-Bielsa, V., Fabry, B. & Le Bohec, C. (2022). Juvenile emperor penguin range calls for extended conservation measures in the Southern Ocean. Royal Society Open Science, 9(8), Article 211708. https://doi.org/10.1098/rsos.211708
Weber, P. L., Pesch, C., Hermansen, C., Møldrup, P., Greve, M. H., Arthur, E., Norgaard, T. & de Jonge, L. W. (2022). Kan gletsjermel forbedre grønlandsk landbrugsjord?. Poster session presented at Grønne Sammen – Den Grønne Festival, Viborg, Denmark.
McHuron, E. A., Adamczak, S., Arnould, J. P. Y., Ashe, E., Booth, C., Don Bowen, W., Christiansen, F., Chudzinska, M., Costa, D. P., Fahlman, A., Farmer, N. A., Fortune, S. M. E., Gallagher, C. A., Keen, K. A., Madsen, P. T., McMahon, C. R., Nabe-Nielsen, J., Noren, D. P., Noren, S. R. ... Williams, R. (2022). Key questions in marine mammal bioenergetics. Conservation Physiology, 10(1), Article coac055. https://doi.org/10.1093/conphys/coac055