Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Lyman, J. D., Taddia, F., Stritzinger, M. D., Galbany, L., Leloudas, G., Anderson, J. P., Eldridge, J. J., James, P. A., Kruehler, T., Levan, A. J., Pignata, G. & Stanway, E. R. (2018). Investigating the diversity of supernovae type Iax: a MUSE and NOT spectroscopic study of their environments. Royal Astronomical Society. Monthly Notices, 473(1), 1359-1387. https://doi.org/10.1093/mnras/stx2414

Bertl, J. (2017). The whole-genome panorama of cancer drivers. https://doi.org/10.1101/190330

Ferapontova, E. (2017). Basic concepts and recent advances in electrochemical analysis of nucleic acids. Current Opinion in Electrochemistry, 5(1), 218-225. https://doi.org/10.1016/j.coelec.2017.09.026

Mollion, M., Ehlers, B., Figuet, E., Santoni, S., Lenormand, T., Maurice, S., Galtier, N. & Bataillon, T. (2018). Patterns of genome-wide nucleotide diversity in the gynodioecious plant Thymus vulgaris are compatible with recent sweeps of cytoplasmic genes. Genome Biology and Evolution, 10(1), 239-248. https://doi.org/10.1093/gbe/evx272

Andersen, L. L., Terczyńska-Dyla, E., Mørk, N., Scavenius, C., Enghild, J. J., Höning, K., Hornung, V., Christiansen, M., Mogensen, T. H. & Hartmann, R. (2019). Frequently used bioinformatics tools overestimate the damaging effect of allelic variants. Genes and Immunity, 20(1), 10-22. https://doi.org/10.1038/s41435-017-0002-z

Stromsheim, M. D., Svenum, I.-H., Farstad, M. H., Li, Z., Gavrilovic, L., Guo, X., Lervold, S., Borg, A. & Venvik, H. J. (2018). Effects of K adsorption on the CO-induced restructuring of Co(11-20). Catalysis Today, 299, 37-46. https://doi.org/10.1016/j.cattod.2017.05.086

Alnor, T., Kristiansen, S. M., Graeber, D. & Kronvang, B. (2017). Dyrkning sender fortidens kulstof fra jord til fjord. Vand & Jord, 24(4), 132-136.

Hefner, M., Labouriau, R., Nørremark, M., de Visser, R., Bay, P. & Kristensen, H. L. (2017). Flere rødder og højere udbytte i faste kørespor i økologisk grønsagsdyrkning. Poster session presented at Økologikongres 2017, Kolding, Denmark.

Andreasen, E., Gong, L., Møller, A., Pradel, M., Selakovic, M., Sen, K. & Staicu, C.-A. (2017). A Survey of Dynamic Analysis and Test Generation for JavaScript. A C M Computing Surveys, 50(5), 66:1-66:36. Article 66. https://doi.org/10.1145/3106739

Andreasen, E. S., Møller, A. & Nielsen, B. B. (2017). Systematic Approaches for Increasing Soundness and Precision of Static Analyzers. In K. Ali & C. Cifuentes (Eds.), SOAP 2017 - Proceedings of the 6th ACM SIGPLAN International Workshop on State of the Art in Program Analysis, co-located with PLDI 2017 (pp. 31-36). Association for Computing Machinery. https://doi.org/10.1145/3088515.3088521

Bruun, H. H., Ejrnæs, R., Rahbek, C., Svenning, J.-C., D.D. Hansen, M., Strandberg, B. & Geldmann, J. (2017). Topforskere: Her er fakta i debatten om bier. Altinget. https://www.altinget.dk/miljoe/artikel/topforskere-her-er-fakta-i-debatten-om-bier

Glusman, G., Rose, P. W., Prlić, A., Dougherty, J., Duarte, J. M., Hoffman, A. S., Barton, G. J., Bendixen, E., Bergquist, T., Bock, C., Brunk, E., Buljan, M., Burley, S. K., Cai, B., Carter, H., Gao, J. J., Godzik, A., Heuer, M., Hicks, M. ... Deutsch, E. W. (2017). Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: A proposed framework. Genome Medicine, 9(1), Article 113. https://doi.org/10.1186/s13073-017-0509-y

Autzen, H. E., Myasnikov, A. G., Campbell, M. G., Asarnow, D., Julius, D. & Cheng, Y. (2018). Structure of the human TRPM4 ion channel in a lipid nanodisc. Science, 359(6372), 228-232. https://doi.org/10.1126/science.aar4510

Skibsted, E. & Herbst, I. (2017). Decay of eigenfunctions of elliptic PDE's. RIMS Kokyuroku, RIMS Kokyuroku (2023), 35-39.

Adamsen, C. Q., Møller, A., Karim, R., Sridharan, M., Tip, F. & Sen, K. (2017). Repairing Event Race Errors by Controlling Nondeterminism. In Proceedings - 2017 IEEE/ACM 39th International Conference on Software Engineering, ICSE 2017 (pp. 289-299). Article 7985670 IEEE Press. https://doi.org/10.1109/ICSE.2017.34

Kristensen, E. K. & Møller, A. (2017). Inference and Evolution of TypeScript Declaration Files. In M. Huisman & J. Rubin (Eds.), Fundamental Approaches to Software Engineering - 20th International Conference, FASE 2017 Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2017, Proceedings: 20th International Conference, FASE 2017, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2017, Uppsala, Sweden, April 22-29, 2017, Proceedings (Vol. 10202, pp. 99-115). Springer VS. https://doi.org/10.1007/978-3-662-54494-5_6

Barbato, S., Marrocco, E., Intartaglia, D., Pizzo, M., Asteriti, S., Naso, F., Falanga, D., Bhat, R. S., Meola, N., Carissimo, A., Karali, M., Prosser, H. M., Cangiano, L., Surace, E. M., Banfi, S. & Conte, I. (2017). MiR-211 is essential for adult cone photoreceptor maintenance and visual function. Scientific Reports, 7(1), Article 17004. https://doi.org/10.1038/s41598-017-17331-z

Tholey, A., Taylor, N. L., Heazlewood, J. L. & Bendixen, E. (2017). We Are Not Alone: The iMOP Initiative and Its Roles in a Biology- and Disease-Driven Human Proteome Project. Journal of Proteome Research, 16(12), 4273-4280. https://doi.org/10.1021/acs.jproteome.7b00408

Spencer, B., Benedikt, M., Møller, A. & Breugel, F. V. (2017). ArtForm: A Tool for Exploring the Codebase of Form-based Websites. In K. Sen & T. Bultan (Eds.), ISSTA 2017 - Proceedings of the 26th ACM SIGSOFT International Symposium on Software Testing and Analysis (pp. 380-383). Association for Computing Machinery. https://doi.org/10.1145/3092703.3098226

Valsted, F. M., Nielsen, C. V. H., Jensen, J. Q., Sonne, T. & Jensen, M. M. (2017). Strive: Exploring Assistive Haptic Feedback on the Run. In M. Brereton, D. Vyas, A. Soro, B. Ploderer, J. Waycott & A. Morrison (Eds.), Proceedings of the 29th Australian Computer-Human Interaction Conference: Human-Nature, OzCHI 2017 (pp. 275-284). Association for Computing Machinery. https://doi.org/10.1145/3152771.3152801

Höök, K., Hummels, C., Isbister, K., Marti, P., Márquez Segura, E., Jonsson, M., Mueller, F. F., Sanches, P. A. N., Schiphorst, T., Ståhl, A., Svanaes, D., Trotto, A., Petersen, M. G. & Lim, Y. (2017). Soma-Based Design Theory. In CHI 2017 Extended Abstracts - Proceedings of the 2017 ACM SIGCHI Conference on Human Factors in Computing Systems: Explore, Innovate, Inspire (pp. 550-557). Association for Computing Machinery. https://doi.org/10.1145/3027063.3027082

Fender, A. R., Benko, H. & Wilson, A. (2017). MeetAlive: Room-Scale Omni-Directional Display System for Multi-User Content and Control Sharing. In Proceedings of the 2017 ACM International Conference on Interactive Surfaces and Spaces, ISS 2017 (pp. 106-115). Association for Computing Machinery. https://doi.org/10.1145/3132272.3134117

Fender, A., Lindlbauer, D., Herholz, P., Alexa, M. & Müller, J. (2017). HeatSpace: Automatic Placement of Displays by Empirical Analysis of User Behavior. In UIST 2017 - Proceedings of the 30th Annual ACM Symposium on User Interface Software and Technology (pp. 611-621). Association for Computing Machinery. https://doi.org/10.1145/3126594.3126621

Nielsen, C. K., Subbiahdoss, G., Zeng, G., Salmi, Z., Kjems, J., Mygind, T., Snabe, T. & Meyer, R. L. (2018). Antibacterial isoeugenol coating on stainless steel and polyethylene surfaces prevents biofilm growth. Journal of Applied Microbiology, 124(1), 179-187. https://doi.org/10.1111/jam.13634

Findsen, A., Crossley, D. A. & Wang, T. (2018). Feeding alters blood flow patterns in the American alligator (Alligator mississippiensis). Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 215, 1-5. https://doi.org/10.1016/j.cbpa.2017.09.001

Cock, M. D., Dowsley, R., Horst, C., Katti, R., Nascimento, A., Poon, W. S. & Truex, S. (2019). Efficient and Private Scoring of Decision Trees, Support Vector Machines and Logistic Regression Models based on Pre-Computation. IEEE Transactions on Dependable and Secure Computing, 16(2), 217-230. Article 7873244. https://doi.org/10.1109/TDSC.2017.2679189

Dowsley, R., Michalas, A., Nagel, M. & Paladi, N. (2017). A survey on design and implementation of protected searchable data in the cloud. Computer Science Review, 26(Supplement C), 17 - 30. https://doi.org/10.1016/j.cosrev.2017.08.001

Rasmussen, M. K., Scavenius, C. & Enghild, J. J. (2017). Expression profile of cytochrome p450 in hepatic microsomes from Göttingen mini pigs - a proteomics study. Poster session presented at 20th International Conference on Cytochrome P450, Düsseldorf, Germany.

Rasmussen, M. K., Scavenius, C. & Enghild, J. J. (2017). Expression profile of cytochrome p450 in hepatic microsomes from Göttingen mini pigs - a proteomics study. Abstract from 20th International Conference on Cytochrome P450, Düsseldorf, Germany.

Miglio, A., Chiappini, C., Mosser, B., Davies, G. R., Freeman, K., Girardi, L., Jofre, P., Kawata, D., Rendle, B. M., Valentini, M., Casagrande, L., Chaplin, W. J., Gilmore, G., Hawkins, K., Holl, B., Appourchaux, T., Belkacem, K., Bossini, D., Brogaard, K. ... Worley, C. C. (2017). PLATO as it is: A legacy mission for Galactic archaeology. Astronomische Nachrichten, 338(6), 644-661. https://doi.org/10.1002/asna.201713385

De Cock . M., Dowsley, R., Horst, C., Katti, R., Nascimento, A. C. A., Poon , W.-S. & Truex, S. (2017). Efficient Privacy-Preserving Scoring of Decision Trees, SVM and Logistic Regression Models. https://sites.google.com/view/psml/program

Philippsen, B., Larsen, J. S., Skriver, C., Astrup, P. M., Borup, P., Olsen, J. & Mannino, M. (2017). From oysters to cockles at Hjarnø: chronology and economy on a Mesolithic kitchenmidden site. Abstract from Radiocarbon and Diet, Aarhus, Denmark. http://conferences.au.dk/fileadmin/conferences/2017/RadiocarbonAndDiet/RadiocarbonAndDiet2017_BookOfAbstracts.pdf#AbstractBook___.indd%3A.32885%3A5322

Dendzik, M., Fusté, A. B., Michiardi, M., Ngankeu, A. S., Bianchi, M., Miwa, J., Hammer, B., Hofmann, P. & Sanders, C. (2017). Substrate-induced semiconductor-to-metal transition in monolayer WS₂. Physical Review B, 96(23), Article 235440. https://doi.org/10.1103/PhysRevB.96.235440

Helt Nielsen, N., Philippsen, B., Jensen, L. V., Kanstrup, M. & Olsen, J. (2017). Diet of Tollund Man. Stable isotope analyses of an Iron Age bog body from Denmark. Abstract from Radiocarbon and Diet, Aarhus, Denmark. http://conferences.au.dk/fileadmin/conferences/2017/RadiocarbonAndDiet/RadiocarbonAndDiet2017_BookOfAbstracts.pdf#AbstractBook___.indd%3A.33139%3A5385

Vybornov, A. A., Kulkova, M. A., Kosintsev, P. & Philippsen, B. (2017). Diet and chronology of the neolithic cultures in the low povolzhye. Abstract from Radiocarbon and Diet, Aarhus, Denmark. http://conferences.au.dk/fileadmin/conferences/2017/RadiocarbonAndDiet/RadiocarbonAndDiet2017_BookOfAbstracts.pdf#AbstractBook___.indd%3A.33304%3A5425

Arena, F., Mannino, M., Philippsen, B., Kanstrup, M., Olsen, J. & Gualdi-Russo, E. (2017). Agro-pastoral diets in southern Italy from the Neolithic to the Bronze Age. Abstract from Radiocarbon and Diet, Aarhus, Denmark. http://conferences.au.dk/fileadmin/conferences/2017/RadiocarbonAndDiet/RadiocarbonAndDiet2017_BookOfAbstracts.pdf#AbstractBook___.indd%3A.33396%3A5448

Philippsen, B., Pleuger, S. & Makarewicz, C. (2017). Multi-scalar insights into hunter-gatherer-farmer-fisher subsistence and diet: Isotopic and zooarchaeological insights from Neolithic Djursland, Denmark. Abstract from Radiocarbon and Diet, Aarhus, Denmark. http://conferences.au.dk/fileadmin/conferences/2017/RadiocarbonAndDiet/RadiocarbonAndDiet2017_BookOfAbstracts.pdf#AbstractBook___.indd%3A.33507%3A5475

Philippsen, B. (2017). Multi-scalar insights into hunter-gatherer-farmer-fisher subsistence and diet: Isotopic and zooarchaeological insights from Neolithic Djursland, Denmark. Poster session presented at Radiocarbon and Diet, Aarhus, Denmark.

Philippsen, B. (2018). Reservoir effects in a Stone Age fjord on Lolland, Denmark. Radiocarbon: An International Journal of Cosmogenic Isotope Research, 60(2), 653-665. https://doi.org/10.1017/RDC.2018.6

Ivanovaite, L., Bjørnevad, M., Philippsen, B., Hoggard, C. S., Enghild, J. J., Scavenius, C., Vasiliauskaite, A., Dručkuvienė, G., Jensen, P., Maring, R., Dodd, J. A., Serwatka, K. & Riede, F. (2018). Making silent bones speak: The analysis of orphaned osseous tools illustrated with Mesolithic stray finds. Archaeologia Baltica, 25, 53-70. https://doi.org/10.15181/ab.v25i0.1830

Midzi, N., Mduluza, T., Mudenge, B., Foldager, L. & Leutscher, P. D. C. (2017). Decrease in Seminal HIV-1 RNA Load After Praziquantel Treatment of Urogenital Schistosomiasis Coinfection in HIV-Positive Men—An Observational Study. Open Forum Infectious Diseases, 4(4), Article ofx199. https://doi.org/10.1093/ofid/ofx199

Foldager, L. & GplusE Consortium (2017). Random forests prediction of blood metabolic clusters by milk metabolites and enzymes in dairy cows. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (pp. 402-402). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Salavati, M. & GplusE Consortium (2017). Exploratory classification of multiparous dairy cows based on fertility related phenotypes. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (pp. 402-402). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Grelet, C., Vanlierde, A., Dehareng, F., Froidmont, E. & GplusE Consortium (2017). Prediction of energy status of dairy cows using MIR milk spectra. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (Vol. 23, pp. 403-403). Wageningen Academic Publishers.

Hammami, H., Colinet, F. G., Bastin, C., Grelet, C., Vanlierde, A., Dehareng, F., Gengler, N. & GplusE Consortium (2017). Genetic analysis of milk MIR predicted blood and milk biomarkers linked to the physiological status. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (pp. 403-403). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Sørensen, M. T. & GplusE Consortium (2017). Use of metabolic clusters predicted by milk metabolites and enzymes to identify potential risk cows. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (pp. 404-404). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Salavati, M. & GplusE Consortium (2017). Investigating metabolic phenotypes in multiparous dairy cows by component analysis and clustering. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (pp. 404-404). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Konrad, C. M., Dupuis, A., Gero, S. & Frasier, T. (2017). A Sexing Technique for Highly Degraded Cetacean DNA. Aquatic Mammals, 43(6), 655-660. https://doi.org/10.1578/AM.43.6.2017.655

Kristensen, L. S., Okholm, T. L. H., Venø, M. T. & Kjems, J. (2018). Circular RNAs are abundantly expressed and upregulated during human epidermal stem cell differentiation. RNA Biology, 15(2), 1-12. https://doi.org/10.1080/15476286.2017.1409931

Dimopoulos, K., Søgaard Helbo, A., Fibiger Munch-Petersen, H., Sjö, L., Christensen, J., Sommer Kristensen, L., Asmar, F., Hermansen, N. E. U., O'Connel, C., Gimsing, P., Liang, G. & Grønbaek, K. (2018). Dual inhibition of DNMTs and EZH2 can overcome both intrinsic and acquired resistance of myeloma cells to IMiDs in a cereblon-independent manner. Molecular Oncology, 12(2), 180-195. https://doi.org/10.1002/1878-0261.12157

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