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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Aagaard, L., Amarzguioui, M., Sun, G., Santos, L. C., Ehsani, A., Prydz, H. & Rossi, J. J. (2007). A Facile Lentiviral Vector System for Expression of Doxycycline-Inducible shRNAs: Knockdown of the Pre-miRNA Processing Enzyme Drosha. Molecular Therapy, 15(5), 938-945. https://doi.org/10.1038/sj.mt.6300118
Bucur, D. & Bardram, J. (2006). Resource Discovery in Activity-Based Sensor Networks. Paper presented at International Conference on Pervasive Computing Technologies for Healthcare, Austria. https://doi.org/10.1109/PCTHEALTH.2006.361663
Sætrom, P., Heale, B. S. E., Snøve, O., Aagaard, L., Alluin, J. & Rossi, J. J. (2007). Distance Constraints between microRNA Target Sites Dictate Efficacy and Cooperativity. Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkm133
Ernst, E. (2006). Family Genericity. Daimi Report Series (DAIMI PB), (PB-578). http://www.daimi.au.dk/publications/PB/578/PB-578.pdf
Bertelsen, O. W. (2006). Tertiary Artefactness at the Interface. In P. A. Fishwick (Ed.), Aesthetic Computing (1 ed.). The MIT Press.
Bertelsen, O. W. & Zander, P.-O. (2006). Towards a Value Theory of the Interface. In DHRS 2006: Proceedings of the Sixth Danish Human-Computer Interaction Research Symposium, November 15, 2006 (pp. 7-8). Datalogisk Institut, Aahus Universitet.
Mark, B., Peter, W., McCarthy, J. & Bertelsen, O. W. (2006). Workshops: Theory and method for experience centered design. In G. M. Olson & R. Jeffries (Eds.), CHI '06: extended abstracts on Human factors in computing systems CHI '06 (pp. 1691-1695). Association for Computing Machinery. https://doi.org/10.1145/1125451.1125764
Søndergaard, C. S., Maxwell, D., Hess, D., Weinheimer, C., Rosova, I., Creer, M., Piwnica-Worms, D., Pedersen, L., Kovacs, A. & Nolta, J. (2006). Human ALDH high stem cells from umbilical cord blood home to the heart after IV injection and have minimal therapeutic benefit in an immune deficient mouse model of acute myocardial infarction. Poster session presented at International Society for Stem Cell Research 4th Annual Meeting in Toronto, Toronto, Canada.
Lee, J., Deng, X. & Bogor, R. (2006). A k-Bounded Symbolic Execution for Checking Strong Heap Properties of Open Systems. In Proceedings of Conference on Automated Software Engineering: ASE'06 (pp. 157-166). IEEE Computer Society Press.
Thomsen, E. (2006). Jordens og livets historie. In Naturgeografi: Jorden og mennesket (1 ed., pp. 27-62). Geografforlaget.
Thomsen, E. & Rasmussen, T. L. (2006). Agglutinated foraminifera using coccoliths as building material: Grain handling and wall structure. In Forams 2006 - International Conference on Foraminifra Anuário do Instituto de Geoscièncias, vol.29-1.
Bech, M., Simonsen, J. B., Handke, B., Li, Z. & Møller, P. J. (2006). Copper nucleation on ZnO(1120) in the presence of sulphur. Surface Science 600, 3375-3381.
Domenichini, B., Rizzi, G. A., Krüger, P., Della Negra, M., Li, Z., Petukhov, M., Granozzi, G., Møller, P. J. & Bourgeois, S. (2006). Experimental and theoretical evidence for substitutional molybdenum atoms in the TiO2(110)subsurface. Physical Review B, 73, 245433.
Karring, H., Thøgersen, I., Klintworth, G., Møller-Pedersen, T. & Enghild, J. J. (2006). The human cornea proteome: bioinformatic analyses indicate import of plasma proteins into the cornea. Molecular Vision, (12), 451-60.
Sun, J., Mikkelsen, A., Jensen, M. F., Koroteev, Y. M., Bihlmayer, G., Chulkow, E. V., Adams, D. L., Hofmann, P. & Pohl, K. (2006). Structural determination of the Bi(110) semimetal surfaceby LEED analysis and ab initio calculations. Physical Review B, 74, 245406.
Carroll, J. M., Bødker, S. & Coughlin, J. (Eds.) (2006). Proceedings of the Conference on Designing Interactive Systems, University Park, PA, USA, June 26-28, 2006. Society for Industrial and Applied Mathematics.
Grønbæk, K. (2006). Ubiquitous hypermedia and social interaction in physical environments. In HYPERTEXT '06: Proceedings of the seventeenth conference on Hypertext and hypermedia (pp. 119-120). Association for Computing Machinery. https://doi.org/10.1145/1149941.1149965
Bardram, J., Bunde-Pedersen, J. & Søgaard, M. (2006). Support for activity-based computing in a personal computing operating system. In R. E. Grinter, T. Rodden, P. M. Aoki, E. Cutrell, R. Jeffries & G. M. Olson (Eds.), CHI '06: Proceedings of the 2006 Conference on Human Factors in Computing Systems (pp. 211-220) https://doi.org/10.1145/1124772.1124805
Georgiadis, L., Tarjan, R. E. & Werneck, R. F. F. (2006). Design of data structures for mergeable trees. In SODA ´06: Proceedings of the Seventeenth Annual ACM-SIAM Symposium on Discrete Algorithms (pp. 394-403). Association for Computing Machinery. https://doi.org/10.1145/1109557.1109602
Heljanko, K., Junttila, T. A., Keinänen, M., Lange, M. & Latvala, T. (2006). Bounded Model Checking for Weak Alternating Büchi Automata. In T. Ball & R. B. Jones (Eds.), CAV ´06: Computer Aided Verification, 18th International Conference (pp. 95-108) https://doi.org/10.1007/11817963_12
Dax, C., Hofmann, M. & Lange, M. (2006). A Proof System for the Linear Time μ-Calculus. In FSTTCS '06: Foundations of Software Technology and Theoretical Computer Science, 26th International Conference (pp. 273-284). Springer LNCS. https://doi.org/10.1007/11944836_26
Grumberg, O., Lange, M., Leucker, M. & Shoham, S. (2007). When Not Losing Is Better than Winning: Abstraction and Refinement for the Full μ-Calculus. Information and Computation, 205(8), 1130-1148. https://doi.org/10.1016/j.ic.2006.10.009
Hansen, T. R., Eriksson, E. & Lykke-Olesen, A. (2006). Use your head: Exploring face tracking for mobile interaction. In G. M. Olson & R. Jeffries (Eds.), CHI Extended Abstracts ´06: Extended Abstracts Proceedings of the 2006 Conference on Human Factors in Computing Systems Society for Industrial and Applied Mathematics. https://doi.org/10.1145/1125451.1125617
Hirt, M. & Nielsen, J. B. (2006). Robust Multiparty Computation with Linear Communication Complexity. In C. Dwork (Ed.), Advances in Cryptology - CRYPTO 2006: 26th Annual International Cryptology Conference (pp. 463-482) https://doi.org/10.1007/11818175_28
Krukow, K. K. & Nielsen, M. (2007). From Simulations to Theorems: A Position Paper on Research in the Field of Computational Trust. In T. Dimitrakos, F. Martinelli, P. Y. A. Ryan & S. Schneider (Eds.), Formal Aspects in Security and Trust: Fourth International Workshop, FAST 2006, Hamilton, Ontario, Canada, August 26-27, 2006, Revised Selected Papers (pp. 96-111). Springer. https://doi.org/10.1007/978-3-540-75227-1_7
Krukow, K. (2006). An Operational Semantics for Trust Policies. In WITS '06: 6th International Workshop on Issues in the Theory of Security (Vol. www.brics.dk/RS/05/30/). Springer.
Schaffner, C., Crépeau, C., Savvides, G. & Wullschleger, J. (2006). Information-Theoretic Conditions for Two-Party Secure Function Evaluation. In S. Vaudenay (Ed.), Advances in Cryptology - EUROCRYPT 2006: 5th Annual International Conference on the Theory and Applications of Cryptographic Techniques (pp. 538-554) https://doi.org/10.1007/11761679_32
Miltersen, P. B. & Vinodchandran, N. V. (2005). Derandomizing Arthur-Merlin Games using Hitting Sets. Computational Complexity, 14(3), 256-279. https://doi.org/10.1007/s00037-005-0197-7
Rasmussen, T. L., Hastrup, A. & Thomsen, E. (2006). Lagoon to deep-water foraminifera and ostracods from Plio-Pleistocene deposits, Rhodes, Greece. In Forams 2006, International Symposium on Foraminifera (pp. 292-293). Anuário do Instituto de Geoscièncias, vol.29-1.
Clemmensen, A. & Thomsen, E. (2006). Paleoenvironmental interpretation of the Danian-Selandian transition (Paleocene) in the North Sea Basin based on foraminifera. In Forams 2006, International Symposium on Foraminifera (pp. 482-483). Anuário do Instituto de Geoscièncias, vol.29-1.
Meerhoff, M., Fosalba, C., Bruzzone, C., Mazzeo, N., Noordoven, W. & Jeppesen, E. (2006). An experimental study of habitat choice by Daphnia: plants signal danger more than refuge in subtropical lakes. Freshwater Biology, 51, 1320-1330. https://doi.org/10.1111/j.1365-2427.2006.01574.x
Ankjærgaard, C., Murray, A. S., Denby, P. M. & Bøtter-Jensen, L. (2006). Measurement of optically and thermally stimulated electron emission from natural minerals. Radiation Measurements, 41, 780-786.
Bos, A. J. J., Wallinga, J., Johns, C., Abellon, R. D., Brouwer, J. C., Schaart, D. R. & Murray, A. S. (2006). Accurate calibration of a laboratory beta particle dose rate for dating purposes. Radiation Measurements, 41, 1020-1025.
Choi, J. H., Murray, A. S., Cheong, C.-S., Hong, D. G. & Chiang, H. W. (2006). Estimation of equivalent dose using quartz isothermal TL and the SAAR procedure. Quaternary Geochronology, 1, 101-108.
Denby, P. M., Bøtter-Jensen, L., Murray, A. S. & Moska, P. (2006). Application of pulsed OSL to the separation of the luminescence components from a mixed quartz/feldspar sample. Radiation Measurements, 41, 774-779.

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Triboun, P., Chantaranothai, P. & Larsen, K. (2002). Zingiber idae, a new name for Z. villosum Theilade (Zingiberaceae). Thai Forest Bulletin (BOT.), 30, 62-68.
Nørberg, P., Finster, K., Folkmann, F., Gunnlaugsson, H. P., Hansen, A., Kinch, K., Lomstein, B. A. & Merrison, J. P. (2002). Facility at the Mars-simulation laboratory. Paper presented at Graz, Austria, 16-19 September 2002.
Lægaard, S., Aguirre M., Z. (Ed.), Madsen, J. E. (Ed.), Cotton, E. (Ed.) & Balslev, H. (Ed.) (2002). Géneros de gramíneas en el sur de Ecuador. In Botánica Austroecuatoriana: Estudios sobre los recursos vegetales en las provincias de El Oro, Loja y Zamora-Chinchipe (pp. 257-287).
Parker, D. & Hughes, R. N. (Ed.) (2002). Geographic parthenogenesis in terrestrial invertebrates: generalist or specialist clones? In Reproductive biology of invertebrates (Vol. XI ed., pp. 93-114). Oxford.
Olesen, J. M. & Jordano, P. (2002). Geographic patterns in plant/pollinator mutualistic networks. Ekologia, 83, 2416-2424.
Jetten, M., Schmid, M., Schmidt, I., Kuenen, G., Ottosen, L. D. M. & al., E. (2002). Improved nitrogen removal by application of a new nitrogen cycle bacteria. Reviews in Environmental Science and Biotechnology, 1, 51-63.
Gollasch, S., MacDonald, E., Belson, S., Botnen, H., Christensen, J. T., Hamer, J. P., Houvenaghel, G., Jelmert, A., Lucas, I., Masson, D., McCollin, T., Olenin, S., Persson, A., Wallentius, I., Wetsteyn, L. P. M. J. & Wittling, T. (2002). Life in ballast tanks. In E. Leppäkoski, S. Gollasch & S. Olenin (Eds.), Invasive aquatic species of Europe: distribution, impacts and management. (pp. 217-231). Kluwer Academic Publishers.
Jorgensen, T. H., Degn, B., Wang, A. G., Vang, M., Gurling, H., Kalsi, G., McQuillin, A., Kruse, T. A., Mors, O. & Ewald, H. (2002). Linkage disequilibrium and demographic history of the isolated population of the Faroe Islands. European Journal of Human Genetics, 10(6), 381-387. https://doi.org/10.1038/sj.ejhg.5200816
Richardson, K. (2002). Linking plankton and fish production throughout the history of ICES. In ICES Marine Science Symposia: Growth of the theory of plankton production and links to fish recruitment (215 ed., pp. 156-163)
Øllgaard, B., Aguirre M., Z. (Ed.), Madsen, J. E. (Ed.), Cotton, E. (Ed.) & Balslev, H. (Ed.) (2002). Los helechos del sur de Ecuador. In Botánica Austroecuatoriana: Estudios sobre los recursos vegetales en las provincias de El Oro, Loja y Zamora-Chinchipe (pp. 311-338).
Balslev, H., Øllgaard, B., Aguirre, Z. (Ed.), Madsen, J. E. (Ed.), Cotton, E. (Ed.) & Balslev, H. (Ed.) (2002). Mapa de vegetación del sur de Ecuador. In Botánica Austroecuatoriana: Estudios sobre los recursos vegetales en las provincias de El Oro, Loja y Zamora-Chinchipe (pp. 51-64).
Richardson, K., Steffen, W. (Ed.), Jäger, J. (Ed.), Carson, D. J. (Ed.) & Bradshaw, C. (Ed.) (2002). Marine Biodiversity: Why we need it in earth system science. (Chapter 30 ed.) (pp. 161-163).
Michaelis, W., Seifert, R., Nauhaus, K., Treude, T., Thiel, V., Blumenberg, M., Knittel, K., Gieseke, A., Peterknecht, K., Pape, T., Boetius, A., Amann, R., Jørgensen, BB., Widdel, F., Peckmann, J., Pimenov, NV. & Gulin, MB. (2002). Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane. Science, 297(5583), 1013-1015.
Kristensen, T. N., Berg, P., Løvendahl, P. & Loeschcke, V. (2002). Molekylære chaperoner. Jordbrugsforskning, 6(6), 1-3.
Arias, C. A., Brix, H. & Johansen, N. H. (2002). Phosphorus removal from municipal wastewater in an experimental two-stage vertical flow constructed wetland system equipped with a calcite filter. Paper presented at Proceedings of the 8th international conference on wetland systems for water pollution control, Arusha, Tanzania 16-19 September 2002.
Pawlowski, J., Holzmann, M., Berney, C., Fahrni, J., Cedhagen, T. & Bowser, S. S. (2002). Phylogeny of allogromiid Foraminifera inferred from SSU rRNA gene sequences. Journal of Foraminiferal Research, 32(4), 334-343.
Gustafsson, M., Bittrich, V. & Stevens, P. F. (2002). Phylogeny of the Clusiaceae based on rbcL sequences. International Journal of Plant Sciences, 163, 1045-1054.
Olesen, J. M., Valido, A. & Dupont, Y. (2002). Polinación de plantas canarias. El Indiferente, 13, 18-29.
Olsen, R. B., Richardson, K. & Simonsen, V. (2002). Population differentiation of eelpout Zoarces viviparus in a Danish fjord. Mar. Ecol. Prog. Ser., 227, 97-107.
Stecyk, J. A. W., Farell, A. P., Overgaard, J. & Wang, T. (2002). Regulation of systemic resistance and changes in blood flow distribution in the red-eared slider (Trachemys scripta) during anoxic submergence. In Comparative Biochemistry and Physiology. SEB 2002 abstracts.Annual Main Meeting of the Society for Experimental Biology 8-12 April 2002, 132/A Suppl. 1 (pp. s24)
Cabello, A., Arias, C. A., Brix, H. & Johansen, N.-H. (2002). Removal of bacteriologic indicator organisms from municipal wastewater in an experimental two-stage vertical flow constructed wetland system. Paper presented at Proceedings of the 8th international conference on wetland systems for water pollution control. Arusha, Tanzania 16-19 September 2002.
Balslev, H. & Kirschner, J. (2002). Rostkovia, Patosia and Distichia. In in Species Plantarum, Flora of the World (pp. 2-8, 13-18)
Jorgensen, T. H., Børglum, A. D., Mors, O., Wang, A. G., Pinaud, M., Flint, T. J., Dahl, H., Vang, M., Kruse, T. A. & Ewald, H. (2002). Search for common haplotypes on chromosome 22q in patients with schizophrenia or bipolar disorder from the Faroe Islands. American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 114(2), 245-252. https://doi.org/10.1002/ajmg.10191
Nørnberg, P., Merrison, J. P., Finster, K., Folkmann, F., Gunnlaugsson, H. P., Hansen, A., Jensen, A. M., Kinch, K., Lomstein, B. A. & Mugford, R. (2002). Simulation of martian surface conditions and dust transport. Paper presented at Graz, Austria, 16-19 September (ESA SP-518,November 2002).