Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

Sort by: Date | Author | Title

Markfoged, R., Nielsen, L. P., Nyord, T., Ottosen, L. D. M. & Revsbech, N. P. (2009). Microbial processes and greenhouse gas emissions from injected liquid manure. Abstract from Climate Change: Global Risks, Challenges and Decisions, Denmark. https://doi.org/10.1088/1755-1307/6/4/242026

Domesle, C., Jordon-Thaden, B., Lammich, L., Förtstel, M., Hergenhahn, U., Wolf, A. & Pedersen, H. B. (2010). Photoelectron spectroscopy of O^- at 266 nm: Ratio of ground- and excited-state atomic oxygen production and channel-resolved photoelectron anisotropy parameters. Physical Review A, 82(3), 033402. https://doi.org/10.1103/PhysRevA.82.033402

Gudmundsson, M., Fischer, D., Haag, N., Johansson, H. A. B., Misra, D., Reinhed, P., Schmidt-Böcking, H., Schuch, R., Schöffler, M., Støchkel, K., Schmidt, H. T. & Cederquist, H. (2010). Angular scattering in fast ion-atom electron transfer collisions: projectile wave diffraction and Thomas mechanisms. Journal of Physics B: Atomic, Molecular and Optical Physics, 43(18), 185209-. https://doi.org/10.1088/0953-4075/43/18/185209

Gribsholt, B., Risgaard-Petersen, N., Musat, N., Vagner, T., Adam, B., Kuypers, M. & Jørgensen, B. B. (2010). Single cell ammonium and carbon assimilation in a marine sediment measured by secondary ion mass spectrometry (nanoSIMS). Abstract from 13th International Symposium on Microbial Ecology, Seattle, United States.

Schrum, H., Murray, R. & Gribsholt, B. (2010). Comparison of Rhizon sampling and whole round squeezing on the accuracy of porewater chemistry measurements in marine sediments. Limnology and Oceanography: Methods.

Rasmussen, C. (2009). På feltarbejde i Grønland: Internationalisering. HK Statbladet, (4), 34-35.

Borggaard, O. K., Dalsgaard, K., Kristiansen, S. M., Rasmussen, C., Knadel, M. & Knudsen, L. (2011). Teksturanalyse: Metoder og udfordringer. In G. H. Rubæk & P. Sørensen (Eds.), Jordanalyser - kvalitet og anvendelse (pp. 74-83).

Andersen, E. S. (2010). Prediction and design of DNA and RNA structures. New Biotechnology, 27(3), 184-193.

Andersen, E. S. & Nielsen, M. M. (2009). DNA origami design of 3D nanostructures. Nature Protocols (Online).

Rothmann, J., Søndergaard, E., Christensen, O. F. & Ladewig, J. (2010). Practical assessment of reactivity and associations to rideability and performance traits. In Book of Abstracts of the 61st Annual Meeting of the European Association for Animal Production (Vol. 16, pp. 151). Wageningen Academic Publishers.

Ruskov, R., Korotkov, A. N. & Mølmer, K. (2010). Qubit State Monitoring by Measurement of Three Complementary Observables. Physical Review Letters, 105(10), 100506. https://doi.org/10.1103/PhysRevLett.105.100506

Faurby, S. & Funch, P. (2011). Size is not everything: A meta-analysis of geographic variation in microscopic eukaryotes. Global Ecology and Biogeography, 20(3), 475-485. https://doi.org/10.1111/j.1466-8238.2010.00609.x

Agarwal, P. K., Arge, L. A., Yang, J. & Yi, K. (2003). I/O-Efficient Structures for Orthogonal Range-Max and Stabbing-Max Queries. In G. Di Battista & U. Zwick (Eds.), Algorithms - ESA 2003: 11th Annual European Symposium, Budapest, Hungary, September 16-19, 2003. Proceedings (pp. 7-18). Springer. https://doi.org/10.1007/978-3-540-39658-1_4

Procopiuc, O., Agarwal, P. K., Arge, L. A. & Vitter, J. S. (2003). Bkd-Tree: A Dynamic Scalable kd-Tree. In Advances in Spatial and Temporal Databases: 8th International Symposium, SSTD 2003 Santorini Island, Greece, July 24-27, 2003. Proceedings (pp. 46-65). Springer. https://doi.org/10.1007/978-3-540-45072-6_4

Arge, L. A. & Chatham, A. (2003). Efficient Object-Relational Interval Management and Beyond. In Advances in Spatial and Temporal Databases: 8th International Symposium, SSTD 2003 Santorini Island, Greece, July 24-27, 2003. Proceedings (pp. 66-82). Springer. https://doi.org/10.1007/978-3-540-45072-6_5

Arge, L. A., Toma, L. & Zeh, N. (2003). I/O-efficient topological sorting of planar DAGs. In Proceedings of the fifteenth annual ACM symposium on Parallel algorithms and architectures (pp. 85-93). Association for Computing Machinery. https://doi.org/10.1145/777412.777427

Agarwal, P. K., Arge, L. A., Danner, A. & Holland-Minkley, B. (2003). Cache-oblivious data structures for orthogonal range searching. In Proceedings of the nineteenth annual symposium on Computational geometry (pp. 237-245). Association for Computing Machinery. https://doi.org/10.1145/777792.777828

Govindarajan, S., Agarwal, P. K. & Arge, L. A. (2003). CRB-Tree: An Efficient Indexing Scheme for Range-Aggregate Queries. In D. Calvanese, M. Lenzerini & R. Motwani (Eds.), Database Theory - ICDT 2003: 9th International Conference Siena, Italy, January 8-10, 2003 Proceedings (pp. 143-157). Springer. https://doi.org/10.1007/3-540-36285-1_10

Arge, L. A., Procopiuc, O. & Vitter, J. S. (2002). Implementing I/O-efficient Data Structures Using TPIE. In R. Möhring & R. Raman (Eds.), Algorithms - ESA 2002: 10th Annual European Symposium Rome, Italy, September 17-21, 2002 Proceedings (pp. 161-172). Springer. https://doi.org/10.1007/3-540-45749-6_12

Kristiansen, S. M., Christensen, B. T. & Chenu, C. (2010). Density fractionation of organic matter in soil: influence of liquid density. Poster session presented at ASA, CSSA, and SSSA 2010 International Annual Meetings, Long Beach, CA, United States. http://a-c-s.confex.com/crops/2010am/

Kristiansen, S. M. (2010). Jorden og sundheden: medicinsk geologi. Geologisk Nyt, (5), 16-19.

Kristiansen, S. M., Yde, J. C., Barcena, T. G., Jakobsen, B. H., Olsen, J. & Knudsen, N. T. (2013). Geochemistry of groundwater in front of a warm-based glacier in Southeast Greenland. Geografiska Annaler: Series A, Physical Geography, 95(2), 97-108. https://doi.org/10.1111/geoa.12003

Andersen, K. K. S., Oliver, B. & Ventura, J. (2010). Reduced, tame and exotic fusion systems. arxiv.org. http://arxiv.org/abs/1009.0622

Kristiansen, S. M., Hansen, B. & Christensen, F. D. (2011). Vejsalt i grundvandet. Vand og Jord, 18(1), 4-7.

Agarwal, P. K., Arge, L. A. & Vahrenhold, J. (2001). Time Responsive External Data Structures for Moving Points. In F. Dehne, J.-R. Sack & R. Tamassia (Eds.), Algorithms and Data Structures: 7th International Workshop, WADS 2001 Providence, RI, USA, August 8-10, 2001 Proceedings (pp. 50-61). Springer. https://doi.org/10.1007/3-540-44634-6_6

Agarwal, P. K., Arge, L. A., Procopiuc, O. & Vitter, J. S. (2001). A Framework for Index Bulk Loading and Dynamization. In F. Orejas, P. G. Spirakis & J. van Leeuwen (Eds.), Automata, Languages and Programming: 28th International Colloquium, ICALP 2001 Crete, Greece, July 8-12, 2001 Proceedings (pp. 115-127). Springer. https://doi.org/10.1007/3-540-48224-5_10

Arge, L. A., Procopiuc, O., Ramaswamy, S., Suel, T., Vahrenhold, J. & Vitter, J. S. (2000). A Unified Approach for Indexed and Non-indexed Spatial Joins. In C. Zaniolo, P. C. Lockemann, M. H. Scholl & T. Grust (Eds.), Advances in Database Technology - EDBT 2000: 7th International Conference on Extending Database Technology Konstanz, Germany, March 27-31, 2000 Proceedings (pp. 413-429). Springer. https://doi.org/10.1007/3-540-46439-5_29

Arge, L. A., Samoladas, V. & Vitter, J. S. (1999). On two-dimensional indexability and optimal range search indexing. In Proceedings of the eighteenth ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems (pp. 346-357). Association for Computing Machinery. https://doi.org/10.1145/303976.304010

Rezende, J. R. D., Hubert, C., Kjeldsen, K. U., Loy, A., Müller, A., Wagner, M. & Jørgensen, B. B. (2010). Abundance and similarity of endospores of thermophilic sulfate-reducing bacteria in cold marine sediments of Aarhus Bay (56N) and Svalbard (79N). Abstract from 13th International Symposium on Microbial Ecology (ISME-13), Seattle, United States.

Müller, A., Rezende, J. R. D., Hubert, C., Kjeldsen, K. U., Wagner, M., Jørgensen, B. B. & Loy, A. (2010). Tracking heat-lovers in the cold: towards a global phylogeography of thermophilic spore-forming bacteria in marine sediments.. Poster session presented at 13th International Symposium on Microbial Ecology (ISME-13), Seattle, United States.

Agarwal, P. K., Arge, L. A., Brodal, G. S. & Vitter, J. S. (1999). I/O-efficient dynamic point location in monotone planar subdivisions. In Proceedings of the tenth annual ACM-SIAM symposium on Discrete algorithms (pp. 11-20). Association for Computing Machinery.

Arge, L. A., Procopiuc, O., Ramaswamy, S., Suel, T. & Vitter, J. S. (1998). Scalable Sweeping-Based Spatial Join. In Proceedings of 24th Annual International Conference on Very Large Databases

Arge, L. A., Procopiuc, O., Ramaswamy, S., Suel, T. & Vitter, J. S. (1998). Theory and practice of I/O-efficient algorithms for multidimensional batched searching problems. In Proceedings of the ninth annual ACM-SIAM symposium on Discrete algorithms (pp. 685-694). Association for Computing Machinery.

Kjeldsen, E., Hübner, G. M., Tordrup, D. P., Knudsen, B. R. & Andersen, F. F. (2010). Topoisomerase I Deficiency Results in Chromosomal Alterations in Cervical Cancer Cells. Anticancer Research, 30, 3257-3265.

Subramani, R., Jensen, S. J., Rotaru, A., Andersen, F. F., Gothelf, K. V., Mamdouh, W., Besenbacher, F., Dong, M. & Knudsen, B. R. (2010). A Novel Secondary DNA Binding Site in Human Topoisomerase I Unravelled by using a 2D DNA Origami Platform. A C S Nano, 4, 5969-77.

Baattrup-Pedersen, A., Dalkvist, D., Dybkjær, J. B., Riis, T., Larsen, S. E. & Kronvang, B. (2013). Species recruitment following flooding, sediment deposition and seed addition in restored riparian areas. Restoration Ecology, 21(3), 399-408.

Agarwal, P. K., Arge, L. A., Murali, T. M., Varadarajan, K. R. & Vitter, J. S. (1998). I/O-efficient algorithms for contour-line extraction and planar graph blocking. In Proceedings of the ninth annual ACM-SIAM symposium on Discrete algorithms (pp. 117-126). Association for Computing Machinery.

Petersen, K. D., Nielsen, S. B., Clausen, O. R., Stephenson, R. A. & Gerya, T. (2010). Small-Scale Mantle Convection Produces Stratigraphic Sequences in Sedimentary Basins. Science, 329(5993), 827 - 830. https://doi.org/10.1126/science.1190115

Skov, T., Buchaca, T., Amsinck, S. L., Landkildehus, F., Odgaard, B. V., Azevedo, J., Goncalves, V., Raposeiro, P. M., Andersen, T. J. & Jeppesen, E. (2010). Using invertebrate remains and pigments in the sediment to infer changes in trophic structure after fish introduction in Lake Fogo: a crater lake in the Azores. Hydrobiologia, 654, 13-25. https://doi.org/10.1007/s10750-010-0325-5

Fadista, J., Zhan, B., Hedegaard, J. & Bendixen, C. (2010). Structural variation in the pig genome using next-generation sequencing. Poster session presented at Conference of the International Society for Animal Genetics, ISAG 2010, Edinburgh, United Kingdom.

Zhan, B., Hedegaard, J., Bendixen, C. & Panitz, F. (2010). Analysis of global variation in pig: Discovery of novel SNPs by whole genome re-sequencing. Poster session presented at Conference of the International Society for Animal Genetics, ISAG 2010, Edinburgh, United Kingdom.

Nielsen, M., Hedegaard, J., Skovgaard, K., Heegaard, P. M., Bendixen, C. & Thomsen, B. (2010). Expression profiling of mRNA and microRNA in pigs infected with Actinobacillus pleuropneumoniae. Poster session presented at Conference of the International Society for Animal Genetics, ISAG 2010, Edinburgh, United Kingdom.

Hedegaard, J., Schou, K. K., Skovgaard, K., Zhan, B., Panitz, F., Hornshøj, H., Heegaard, P. M., Angen, Ø., Boye, M. & Bendixen, C. (2010). The porcine systemic response to pleuropneumonia studied by transcriptional profi ling of liver and tracheobronchial lung lymph nodes using multiplexed mRNA-Seq: P5040. Poster session presented at Conference of the International Society for Animal Genetics, ISAG 2010, Edinburgh, United Kingdom.

Arge, L. A., Ferragina, P., Grossi, R. & Vitter, J. S. (1997). On sorting strings in external memory. In Proceedings of the twenty-ninth annual ACM symposium on Theory of computing (pp. 540-548). Association for Computing Machinery. https://doi.org/10.1145/258533.258647

Hansen, M. B., Seidler, P., Gyorffy, W. & Christiansen, O. (2010). A Lanczos--chain Driven Approach for Calculating Damped Vibrational Configuration Interaction Response Functions. Journal of Chemical Physics, 133, 114102. https://doi.org/10.1063/1.3467889

Meierhenrich, U., Filippi, J.-J., Meinert, C., Bredehoft, J. H., Takahashi, J., Nahon, L., Jones, N. C. & Hoffmann, S. V. (2010). Circular Dichroism of Amino Acids in the Vacuum-Ultraviolet Region. Angewandte Chemie International Edition, 49(42), 7799-7802. https://doi.org/10.1002/anie.201003877

Andersen, T. R., Huuse, M., Jørgensen, F. & Christensen, S. (2012). Seismic investigations of buried tunnel valleys on- and offshore Denmark. Geological Society Special Publication, 368, 129-144. https://doi.org/10.1144/SP368.14

Green, O., Jørgensen, R. N., Kristensen, K., Bochtis, D. & Sørensen, C. A. G. (2010). Hjulbelastning og dæktryks påvirkning af græsudbyttet. Poster session presented at Netværksmøde om IT i landbruget, Foulum.