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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Ribeiro, M., Tolêdo , T., Winther, J., Brabrand, C. & Borba, P. (2012). Emergo : a tool for improving maintainability of preprocessor-based product lines. In Proceedings of the 11th annual international conference on Aspect-oriented Software Development Companion, AOSD Companion '12 (pp. 23-26 ). Association for Computing Machinery. https://doi.org/10.1145/2162110.2162128

Kölker, J. (2012). Selected Slither Link Variants are NP-complete. Journal of Information Processing, 20(3), 709-712 . https://doi.org/10.2197/ipsjjip.20.709

Kejlberg-Rasmussen, C., Tsakalidis, K. & Tsichlas, K. (2012). I/O-Efficient Dynamic Planar Range Skyline Queries. arxiv.org. http://arxiv.org/abs/1207.2341

Hazay, C. & Nissim , K. (2012). Efficient Set Operations in the Presence of Malicious Adversaries. Journal of Cryptology, 25(3), 383-433 . https://doi.org/10.1007/s00145-011-9098-x

Akavia, A., Goldwasser, S. & Hazay, C. (2012). Distributed public key schemes secure against continual leakage. In Proceedings of the 2012 ACM symposium on Principles of Distributed Computing, PODC (pp. 155-164 ). Association for Computing Machinery. https://doi.org/10.1145/2332432.2332462

Damgård, I. B. (2011). Quantum Communication Attacks on Classical Cryptographic Protocols. Abstract from 5th International Conference on Information Theoretic Security, Amsterdam, Netherlands. https://doi.org/10.1007/978-3-642-20728-0_16

Hansen, H. G., Schmidt, J. D., Søltoft, C. L., Ramming, T., Geertz-Hansen, H. M., Christensen, B., Sørensen, E. S., Juncker, A. S., Appenzeller-Herzog, C. & Ellgaard, L. (2012). Hyperactivity of the Ero1α oxidase elicits endoplasmic reticulum stress but no broad antioxidant response. Journal of Biological Chemistry, 287(47), 39513-39523. https://doi.org/10.1074/jbc.M112.405050

Branzei, S., Michalak, T., Rahwan, T., Larson, K. & Jennings, N. R. (2012). Matching Games with Additive Externalities. http://arxiv.org/abs/1207.3682

Ackerman, M. & Branzei, S. (2012). Research Quality, Fairness, and Authorship Order. http://arxiv.org/abs/1208.3391

Schindler, S. (2013). Mechanistic Explanation: asymmetry lost. In V. Karakostas & D. Dieks (Eds.), EPSA11 Perspectives and Foundational Problems in Philosophy of Science Springer.

Kristiansen, S. M., Murphy, M. W., Thorup Nielsen, M., Gomes, S. I. L., Amorim, M. J. B. & Scott-Fordsmand, J. J. (2012). XAS analysis of copper in a soil matrix (II). In DESY Annual report http://photon-science.desy.de/annual_report/files/2011/20111921.pdf

Houmøller, J., Kaufman, S. H., Støchkel, K., Tribedi, L. C., Brøndsted Nielsen, S. & Weber, J. M. (2013). On the Photoabsorption by Permanganate Ions in Vacuo and the Role of a Single Water Molecule. New Experimental Benchmarks for Electronic Structure Theory. ChemPhysChem, 14(6), 1133-1137. https://doi.org/10.1002/cphc.201300019

Steffensen, S., Madsen, N. D. & Jensen, H. M. (2013). Numerical estimation of fracture toughness from indentation-induced circumferential cracking in thin films on ductile substrates. International Journal of Solids and Structures, 50(20-21), 3406–3417. http://www.sciencedirect.com/science/article/pii/S0020768313002503

Hansen, K. A., Koucky, M., Lauritzen, N., Miltersen, P. B. & Tsigaridas, E. (2012). Exact Algorithms for Solving Stochastic Games. http://arxiv.org/abs/1202.3898

Rossi, L. & Magnani, M. (2012). Multi-Stratum Networks: toward a unified model of on-line identities. http://arxiv.org/abs/1211.0169

Borchsenius, F., Surez, L. S. S. & Prince, L. M. (2012). Molecular phylogeny and redefined generic limits of Calathea (Marantaceae). Systematic Botany, 37(3), 620-635. https://doi.org/10.1600/036364412X648571

Dupont, Y. L. & Olesen, J. M. (2012). Stability of modular structure in temporal cumulative plant-flower-visitor networks. Ecological Complexity: An International Journal on Biocomplexity in the Environment and Theoretical Ecology, 11, 84-90. https://doi.org/10.1016/j.ecocom.2012.03.004

Faurby, S. & Barber, P. H. (2012). Theoretical limits to the correlation between pelagic larval duration and population genetic structure. Molecular Ecology, 21(14), 3419-3432. https://doi.org/10.1111/j.1365-294X.2012.05609.x

Yue, W., Larsen-Olsen, T. T., Hu, X., Shi, M., Chen, H., Hinge, M., Fojan, P., Krebs, F. C. & Yu, D. (2013). Synthesis and photovoltaic properties from inverted geometry cells and roll-to-roll coated large area cells from dithienopyrrole-based donor–acceptor polymers. Journal of Materials Chemistry, 5(1), 1785-1793. https://doi.org/10.1039/C2TA00695B

Kragh, H. (2013). Science and ideology: The case of cosmology in the Soviet Union, 1947-1963. Acta Baltica Historiae et Philosophiae Scientiarum, 1(1), 35-58. https://doi.org/10.11590/abhps.2013.1.02

Edwards, K. J., Wheat, C. G., Orcutt, B., Hulme, S., Becker, K., Jannasch, H., Haddad, A., Pettigrew, T., Rhinehart, W., Grigar, K., Bach, W., Kirkwood, W. & Klaus, A. (2012). Design and deployment of borehole observatories and experiments during IODP Expedition 336, Mid-Atlantic Ridge flank at North Pond1. Integrated Ocean Drilling Program. Proceedings. Expedition Reports, 336, 109-109. https://doi.org/10.2204/iodp.proc.336.109.2012

Orcutt, B., Barco, R. A., Joye, S. B. & Edwards, K. J. (2012). Summary of carbon, nitrogen, and iron leaching characteristics and fluorescence properties of materials considered for subseafloor observatory assembly1. Integrated Ocean Drilling Program. Proceedings. Expedition Reports, 336, 1-11. https://doi.org/10.2204/iodp.proc.336.108.2012

Byrne, S., Paina, C., Studer, B., Panitz, F., Bendixen, C., Hentrup, S., Jensen, C. & Asp, T. (2013). Application of Genome Wide SNP Markers to Estimate the Extent of Linkage Disequilibrium in a Collection of Perennial Ryegrass Genotypes. In Plant Biotech Denmark Annual meeting 2013 (pp. 107) http://www.plant-biotech.dk/Annual_meeting.aspx

Islam, M. S., Studer, B., Byrne, S., Farrell, J. D., Panitz, F., Bendixen, C., Møller, I. M. & Asp, T. (2013). The genome and transcriptome of perennial ryegrass mitochondria. In Plant Biotech Denmark Annual meeting 2013 (pp. 108) http://www.plant-biotech.dk/Annual_meeting.aspx

Šljivančanin, Ž., Balog, R. & Hornekær, L. (2012). Magnetism in graphene induced by hydrogen adsorbates. Chemical Physics Letters, 541, 70-74. https://doi.org/10.1016/j.cplett.2012.05.043

Ibsen-Jensen, R. & Chatterjee , K. (2013). Strategy Complexity of Finite-Horizon Markov Decision Processes and Simple Stochastic Games. In A. Kučera , T. A. Henzinger, J. Nešetřil, T. Vojnar & D. Antoš (Eds.), Mathematical and Engineering Methods in Computer Science: 8th International Doctoral Workshop, MEMICS 2012, Znojmo, Czech Republic, October 25-28, 2012, Revised Selected Papers (pp. 106-117). Springer VS. https://doi.org/10.1007/978-3-642-36046-6_11

Kelly, S., Muszyński, A., Kawaharada, Y., Hubber, A. M., Sullivan, J. T., Sandal, N., Carlson, R. W., Stougaard, J. & Ronson, C. W. (2013). Conditional requirement for exopolysaccharide in the mesorhizobium-lotus symbiosis. Molecular plant-microbe interactions, 26(3), 319-329. https://doi.org/10.1094/MPMI-09-12-0227-R

Heilmann-Clausen, C. (2012). Koralrev og lerhav (ekskl. Danien). In K. Sand-Jensen & G. Larsen (Eds.), Naturen i Danmark: Geologien (2. ed., Vol. Bd. 2, pp. 181-186 & 191-226). Gyldendal.

Dalby, R. B., Elfving, B., Poulsen, P. H. P., Foldager, L., Frandsen, J., Videbech, P. & Rosenberg, R. (2013). Plasma brain-derived neurotrophic factor and prefrontal white matter integrity in late-onset depression and normal aging. Acta Psychiatrica Scandinavica, 128(5), 387-396. https://doi.org/10.1111/acps.12085

Sandel, B. S., Arge, L., Dalsgaard, B., Davies, R. G., Gaston, K. J., Sutherland, W. J. & Svenning, J.-C. (2012). Response - Global Endemism Needs Spatial Integration Response. Science, 335(6066), 285-286. https://doi.org/10.1126/science.335.6066.285-a

Lenoir, J., Virtanen, R., Oksanen, J., Oksanen, L., Luoto, M., Grytnes, J.-A. & Svenning, J.-C. (2012). Dispersal ability links to cross-scale species diversity patterns across the Eurasian Arctic tundra. Global Ecology and Biogeography, 21(8), 851-860. https://doi.org/10.1111/j.1466-8238.2011.00733.x

Jala, R. C. R., Guo, Z. & Xu, X. (2012). Fractionation of Trans from Partially Hydrogenated Soybean Oil Fatty Acids. Journal of Food Research, 1(1), 157-164. https://doi.org/10.5539/jfr.v1n1p157

Guareschi, S., Gutiérrez-Cánovas, C., Picazo, F., Sánchez-Fernández, D., Rodenas, P. A., Velasco, J. & Millán, A. (2012). Aquatic macroinvertebrate biodiversity: patterns and surrogates in mountainous Spanish national parks. Aquatic Conservation, 22(5), 598-615. https://doi.org/10.1002/aqc.2256

Brandt Hedegaard, G., Christensen, J. H., Geels, C., Gross, A., Hansen, K. M., May, W., Zare, A. & Brandt, J. (2012). Effects of changed climate conditions on tropospheric ozone over three centuries. Atmospheric and Climate Science, 2(4), 546-561. https://doi.org/10.4236/acs.2012.24050

Schindler, S. (2013). The Kuhnian mode of HPS. Synthese, 190(18), 4137-4154. https://doi.org/10.1007/s11229-013-0252-x

Guo, W.-Y., Lambertini, C., Li, X. & Brix, H. (2012). Potential distribution of the cryptic, invasive Haplotype M of common reed Phragmites australis in North America under present and future climate change. Poster session presented at Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.

Toner, B. M., Lesniewski, R. A., Marlow, J. J., Briscoe, L. J., Santelli, C. M., Bach, W., Orcutt, B. & Edwards, K. J. (2013). Mineralogy Drives Bacterial Biogeography of Hydrothermally Inactive Seafloor Sulfide Deposits. Geomicrobiology Journal, 30, 313-326. https://doi.org/10.1080/01490451.2012.688925

Magnussen, R., Hansen, S. D., Grønbæk, K., Mølmer, K. & Sherson, J. F. (2012). Game-based Research Collaboration applied to Science Education. Games+Learning+Society Conference Proceedings, 431-436.

Bulánek, J., Koucky, M. & Saks, M. (2012). Tight lower bounds for the online labeling problem. In Proceedings of the 2012 ACM Symposium on Theory of Computing, STOC’12 (pp. 1185-1198). Association for Computing Machinery. https://doi.org/10.1145/2213977.2214083

Mischuck, B. E., Merkel , S. T. & Deutsch, I. H. (2012). Control of inhomogeneous atomic ensembles of hyperfine qudits. Physical Review A, 85(2), 022302. https://doi.org/10.1103/PhysRevA.85.022302

Storms, J. E. A., de Winter, I. L., Overeem, I., Drijkoningen, G. G. & Lykke-Andersen, H. (2012). The Holocene sedimentary history of the Kangerlussuaq Fjord-valley fill, West Greenland. Quaternary Science Reviews, 35, 29-50. https://doi.org/10.1016/j.quascirev.2011.12.014

Bentsen, I. B., Nielsen, I., Lisby, M., Nielsen, H. B. N., Sen Gupta, S., Mundbjerg, K., Andersen, A. H. & Bjergbæk, L. (2013). MRX protects fork integrity at protein–DNA barriers, and its absence causes checkpoint activation dependent on chromatin context. Nucleic Acids Research, 41(5), 3173-3189. https://doi.org/10.1093/nar/gkt051

Quinones, J. P., Gothelf, K. V., Kjems, J., Heras, A., Schmidt, C. & Peniche, C. (2013). Novel Self-Assembled Nanoparticles of Testosterone-Modified Glycol Chitosan and Fructose Chitosan for Controlled Release. Journal of Biomaterials and Tissue Engineering, 3(1), 164-172. https://doi.org/10.1166/jbt.2013.1071

Sükösd, Z., Knudsen, B., Anderson, J. WJ., Novák, A., Kjems, J. & Pedersen, C. N. S. (2013). Characterising RNA secondary structure space using information entropy. B M C Bioinformatics, 14 (Suppl 2), 1-9. Article S22. https://doi.org/10.1186/1471-2105-14-S2-S22

Temkiv, T. S., Finster, K., Hansen, B. M., Pasic, L. & Gosewinkel, U. B. (2013). Viable methanotrophic bacteria enriched from air and rain can oxidize methane at cloud-like conditions. Aerobiologia, 29(3), 373-384. https://doi.org/10.1007/s10453-013-9287-1

Hossfeld, S., Nolte, A., Hartmann, H., Recke, M., Schaller, M., Walker, T., Kjems, J., Schlosshauer, B., Stoll, D., Wendel, H.-P. & Krastev, R. (2013). Bioactive coronary stent coating based on layer-by-layer technology for siRNA release. Acta Biomaterialia, 9(5), 6741-6752. https://doi.org/10.1016/j.actbio.2013.01.013

Fausto, R., Mernild, S., Hasholt, B., Ahlstrøm, A. & Knudsen, N. T. (2012). Modeling suspended sediment concentration and transport, Mittivakkat glacier, southeast Greenland. Arctic, Antarctic, and Alpine Research, 44(3), 306-318. https://doi.org/10.1657/1938-4246-44.3.306

Versteegh, E. A. A., Blicher, M. E., Mortensen, J., Rysgaard, S., Als, T. D. & Wanamaker Jr., A. D. (2012). Oxygen isotope ratios in the shell of Mytilus edulis: Archives of glacier meltwater in Greenland? Biogeosciences, 9(12), 5231-5241. https://doi.org/10.5194/bg-9-5231-2012

Hedeholm, R., Grønkjær, P. & Rysgaard, S. (2012). Feeding ecology of capelin (Mallotus villosus Müller) in West Greenland waters. Polar Biology, 35(10), 1533-1543. https://doi.org/10.1007/s00300-012-1193-4

Rysgaard, S., Glud, R. N., Lennert, K., Cooper, M., Halden, N., Leakey, R. J. G., Hawthorne, F. C. & Barber, D. (2012). Ikaite crystals in melting sea ice - Implications for pCO 2 and pH levels in Arctic surface waters. Cryosphere, 6(4), 901-908. https://doi.org/10.5194/tc-6-901-2012

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Anne Kirstine Mehlsen