Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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López-Blanco, E., Jackowicz-Korczynski, M. A., Mastepanov, M., Skov, K., Westergaard-Nielsen, A., Williams, M. & Christensen, T. R. (2020). Multi-year data-model evaluation reveals the importance of nutrient availability over climate in arctic ecosystem C dynamics. Environmental Research Letters, 15(9), Article 094007. https://doi.org/10.1088/1748-9326/ab865b

Salazar, N., Rangarajan, S., Rodríguez-Fernández, J., Mavrikakis, M. & Lauritsen, J. V. (2020). Site-dependent reactivity of MoS₂ nanoparticles in hydrodesulfurization of thiophene. Nature Communications, 11, Article 4369. https://doi.org/10.1038/s41467-020-18183-4

Li, C. H., Prokopec, S. D., Sun, R. X., Yousif, F., Schmitz, N., PCAWG Tumour Subtypes and Clinical Translation, Boutros, P. C. & PCAWG Consortium (2020). Sex differences in oncogenic mutational processes. Nature Communications, 11, Article 4330. https://doi.org/10.1038/s41467-020-17359-2

Merl, T. & Koren, K. (2020). Visualizing NH₃ emission and the local O₂ and pH microenvironment of soil upon manure application using optical sensors. Environment International, 144, Article 106080. https://doi.org/10.1016/j.envint.2020.106080

Fricke, E. C. & Svenning, J. C. (2020). Accelerating homogenization of the global plant–frugivore meta-network. Nature, 585(7823), 74-78. https://doi.org/10.1038/s41586-020-2640-y

Fapyane, D. & Revsbech, N. P. (2020). Fast Responding Amperometric CO₂ Microsensor with Ionic Liquid-Aprotic Solvent Electrolytes. ACS Sensors, 5(8), 2604-2610. https://doi.org/10.1021/acssensors.0c01071

Schneemann, A., Wan, L. F., Lipton, A. S., Liu, Y. S., Snider, J. L., Baker, A. A., Sugar, J. D., Spataru, C. D., Guo, J., Autrey, T. S., Jørgensen, M., Jensen, T. R., Wood, B. C., Allendorf, M. D. & Stavila, V. (2020). Nanoconfinement of Molecular Magnesium Borohydride Captured in a Bipyridine-Functionalized Metal-Organic Framework. ACS Nano, 14(8), 10294-10304. https://doi.org/10.1021/acsnano.0c03764

Gartman, A. & Findlay, A. J. (2020). Publisher Correction: Impacts of hydrothermal plume processes on oceanic metal cycles and transport (Nature Geoscience, (2020), 13, 6, (396-402), 10.1038/s41561-020-0579-0). Nature Geoscience, 13(9). https://doi.org/10.1038/s41561-020-0625-y

Su, W., Liu, P., Cai, C., Ma, H., Jiang, B., Xing, Y., Liang, Y., Cai, L., Xia, C., Le, Q. V., Sonne, C. & Lam, S. S. (2021). Hydrogen production and heavy metal immobilization using hyperaccumulators in supercritical water gasification. Journal of Hazardous Materials, 402, Article 123541. https://doi.org/10.1016/j.jhazmat.2020.123541

Ge, S., Yek, P. N. Y., Cheng, Y. W., Xia, C., Wan Mahari, W. A., Liew, R. K., Peng, W., Yuan, T. Q., Tabatabaei, M., Aghbashlo, M., Sonne, C. & Lam, S. S. (2021). Progress in microwave pyrolysis conversion of agricultural waste to value-added biofuels: A batch to continuous approach. Renewable and Sustainable Energy Reviews, 135, Article 110148. https://doi.org/10.1016/j.rser.2020.110148

Nehra, M., Dilbaghi, N., Marrazza, G., Kaushik, A., Sonne, C., Kim, K. H. & Kumar, S. (2021). Emerging nanobiotechnology in agriculture for the management of pesticide residues. Journal of Hazardous Materials, 401, Article 123369. https://doi.org/10.1016/j.jhazmat.2020.123369

Raza, W., Saeed, S., Saulat, H., Gul, H., Sarfraz, M., Sonne, C., Sohn, Z. H., Brown, R. J. C. & Kim, K. H. (2021). A review on the deteriorating situation of smog and its preventive measures in Pakistan. Journal of Cleaner Production, 279, Article 123676. https://doi.org/10.1016/j.jclepro.2020.123676

Wei, Z., Le, Q. V., Peng, W., Yang, Y., Yang, H. X., Gu, H., Lam, S. S. & Sonne, C. (2021). A review on phytoremediation of contaminants in air, water and soil. Journal of Hazardous Materials, 403, Article 123658. https://doi.org/10.1016/j.jhazmat.2020.123658

Rattan, S. (2020). Biological health and homeodynamic space. In Explaining Health Across the Sciences (pp. 43-51). Springer. https://doi.org/10.1007/978-3-030-52663-4_4

Cai, Y., Lou, C., Wengel, J. & Howard, K. A. (2020). Albumin-Binding Fatty Acid-Modified Gapmer Antisense Oligonucleotides for Modulation of Pharmacokinetics. In T. Yokota & R. Maruyama (Eds.), Gapmers : Methods and Protocols (pp. 163-174). Humana Press. https://doi.org/10.1007/978-1-0716-0771-8_12

Candiani, V., Dardé, J., Garde, H. & Hyvönen, N. (2020). Monotonicity-based reconstruction of extreme inclusions in electrical impedance tomography. SIAM Journal on Mathematical Analysis, 52(6), 6234–6259. https://doi.org/10.1137/19M1299219

Garde, H. & Hyvönen, N. (2021). Mimicking relative continuum measurements by electrode data in two-dimensional electrical impedance tomography. Numerische Mathematik, 147(3), 579-609. https://doi.org/10.1007/s00211-020-01170-8

Midtgaard, J. M., Wu, Z., Goldman, N. & Bruun, G. (2020). Detecting chiral pairing and topological superfluidity using circular dichroism. Physical Review Research , 2(133), Article 033385. https://doi.org/10.1103/PhysRevResearch.2.033385

Nielsen, K. H. (2020). Enacting scientific citizenship in citizen science: A closer look at the notion of scientific citizenship and the construction of citizens and science in two Danish citizen science projects. 73. Abstract from ECSA 2020 conference - Encounters in citizen science. https://www.ecsa-conference.eu/Conference_programme.pdf

Nissen, P. E., Christensen-Dalsgaard, J., Mosumgaard, J. R., Silva Aguirre, V., Spitoni, E. & Verma, K. (2020). High-precision abundances of elements in solar-type stars: Evidence of two distinct sequences in abundance-age relations. Astronomy and Astrophysics, 640, Article A81. https://doi.org/10.1051/0004-6361/202038300

McLoughlin, C. K., Kotroni, E., Bregnhøj, M., Rotas, G., Vougioukalakis, G. C. & Ogilby, P. R. (2020). Oxygen- and pH-Dependent Photophysics of Fluorinated Fluorescein Derivatives: Non-Symmetrical vs. Symmetrical Fluorination. Sensors, 20(18), 1-19. Article 5172. https://doi.org/10.3390/s20185172

McLeod, D., Cherubini-Celli, A., Sivasothirajah, N., McCulley, C. H., Christensen, M. L. & Jørgensen, K. A. (2020). Enantioselective 1,3-Dipolar [6+4] Cycloaddition of Pyrylium Ions and Fulvenes towards Cyclooctanoids. Chemistry - A European Journal, 26(50), 11417-11422. https://doi.org/10.1002/chem.202001369

Tiusanen, M., Kankaanpää, T., Schmidt, N. M. & Roslin, T. (2020). Heated rivalries: Phenological variation modifies competition for pollinators among arctic plants. Global Change Biology, 26(11), 6313-6325. https://doi.org/10.1111/gcb.15303

Schmitz, G., Klinting, E. L. & Christiansen, O. (2020). A Gaussian process regression adaptive density guided approach for potential energy surface construction. Journal of Chemical Physics, 153(6), Article 064105. https://doi.org/10.1063/5.0015344

Wimmer, S., Herbreteau, F. & van de Pol, J. (2020). Certifying Emptiness of Timed Büchi Automata. In N. Bertrand & N. Jansen (Eds.), Formal Modeling and Analysis of Timed Systems : 18th International Conference, FORMATS 2020 (pp. 58-75). Springer. https://doi.org/10.1007/978-3-030-57628-8_4

Giarrusso, P. G., Stefanesco, L., Timany, A., Birkedal, L. & Krebbers, R. (2020). Scala step-by-step: Soundness for DOT with step-indexed logical relations in Iris. Proceedings of the ACM on Programming Languages , 4(ICFP), Article 114. https://doi.org/10.1145/3408996

Mohammad-Beigi, H., Hayashi, Y., Zeuthen, C. M., Eskandari, H., Scavenius, C., Juul-Madsen, K., Vorup-Jensen, T., Enghild, J. J. & Sutherland, D. S. (2020). Mapping and identification of soft corona proteins at nanoparticles and their impact on cellular association. Nature Communications, 11(1), Article 4535. https://doi.org/10.1038/s41467-020-18237-7

Evangelista Belo, J. M., Feit, A. M., Feuchtner, T. & Grønbæk, K. (2021). XRgonomics: Facilitating the Creation of Ergonomic 3D Interfaces. In CHI 2021 - Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems: Making Waves, Combining Strengths (pp. 1-11). Article 290 Association for Computing Machinery. https://doi.org/10.1145/3411764.3445349

Thomsen, P. T., Capion, N. & Foldager, L. (2020). Higher odds of abortion in dairy cows hoof trimmed late in gestation. Research in Veterinary Science, 133, 1-3. https://doi.org/10.1016/j.rvsc.2020.08.016

Butler, P. G., Fraser, N. M., Scourse, J. D., Richardson, C. A., Bryant, C. & Heinemeier, J. (2020). Is there a reliable taphonomic clock in the temperate North Atlantic? An example from a North Sea population of the mollusc Arctica islandica. Palaeogeography, Palaeoclimatology, Palaeoecology, 560, Article 109975. https://doi.org/10.1016/j.palaeo.2020.109975

Aminzadeh, A., Tiwari, M. K., Mamah Mustapha, S. S., Navarrete, S. J., Henriksen, A. B., Møller, I. M., Krogfelt, K. A., Bjerrum, M. J. & Jørgensen, R. (2020). Detoxification of toxin A and toxin B by copper ion-catalyzed oxidation in production of a toxoid-based vaccine against Clostridioides difficile. Free Radical Biology and Medicine, 160, 433-446. https://doi.org/10.1016/j.freeradbiomed.2020.08.021

Vidas, L., Schick, D., Martinez, E., Perez-Salinas, D., Ramos-Alvarez, A., Cichy, S., Batlle-Porro, S., Johnson, A. S., Hallman, K. A., Haglund, R. F. & Wall, S. (2020). Does VO₂Host a Transient Monoclinic Metallic Phase? Physical Review X, 10(3), Article 031047. https://doi.org/10.1103/PhysRevX.10.031047

Meadows, J., Heron, C., Hüls, M., Philippsen, B. & Weber, M. J. (2018). Datierung der verlorenen Pfeilschäfte aus Stellmoor (Schleswig-Holstein, Deutschland). Quartar International Yearbook for Ice Age and Stone Age Research, 65, 105-114. https://doi.org/10.7485/QU65_5

Winsløw, L. B., Schack Pedersen, S. A., Boldreel, L. O. & Nørmark, E. (2020). Wrench-fault structures superimposed by glaciotectonic complexes, interpreted from high-resolution reflection-seismic sections and boreholes along the Western Bank of Esrum Sø, North-East Sjælland, Denmark. Bulletin of the Geological Society of Denmark, 68, 171-194. https://doi.org/10.37570/bgsd-2020-68-08s1

Shi, G., Zhou, J., Li, Z., Sun, Y., Kantorovich, L. N., Fang, Q., Besenbacher, F. & Yu, M. (2020). Graphene-Like Covalent Organic Framework with a Wide Band Gap Synthesized On Surface via Stepwise Reactions. Angewandte Chemie - International Edition, 59(37), 15958-15962. https://doi.org/10.1002/anie.202006176

Ames, A. E., Beedholm, K. & Madsen, P. T. (2020). Lateralized sound production in the beluga whale (Delphinapterus leucas). Journal of Experimental Biology, 223(17), Article jeb226316. https://doi.org/10.1242/jeb.226316

Ferguson, S., Major, A. S., Sullivan, J. T., Bourke, S. D., Kelly, S. J., Perry, B. J. & Ronson, C. W. (2020). Rhizobium leguminosarum bv. trifolii NodD2 Enhances Competitive Nodule Colonization in the Clover-Rhizobium Symbiosis. Applied and Environmental Microbiology, 86(18), Article e01268. https://doi.org/10.1128/AEM.01268-20

Karovicova, I., White, T. R., Nordlander, T., Casagrande, L., Ireland, M., Huber, D. & Jofré, P. (2020). Fundamental stellar parameters of benchmark stars from CHARA interferometry: I. Metal-poor stars. Astronomy and Astrophysics, 640, Article 202037590. https://doi.org/10.1051/0004-6361/202037590

Yu, J., Bedding, T. R., Stello, D., Huber, D., Compton, D. L., Gizon, L. & Hekker, S. (2020). Asteroseismology of luminous red giants with Kepler I: Long-period variables with radial and non-radial modes. Monthly Notices of the Royal Astronomical Society, 493(1), 1388-1403. https://doi.org/10.1093/mnras/staa300

Uhd, J., Miotke, L., Ji, H. P., Dunaeva, M., Pruijn, G. J. M., Jørgensen, C. D., Kristoffersen, E. L., Birkedal, V., Yde, C. W., Nielsen, F. C., Hansen, J. & Astakhova, K. (2020). Ultra-fast detection and quantification of nucleic acids by amplification-free fluorescence assay. Analyst, 145(17), 5836-5844. https://doi.org/10.1039/d0an00676a

Dass, R., Mulder, F. A. A. & Nielsen, J. T. (2020). ODiNPred: comprehensive prediction of protein order and disorder. Scientific Reports, 10(1), Article 14780. https://doi.org/10.1038/s41598-020-71716-1

Rahman, M. S., Biswas, C., Biswas, P. K., Kader, M. A., Nur Alam, S. M., Sonne, C. & Kim, K. H. (2020). In Silico analysis of the antigenic properties of iron-regulated proteins against Neisseria meningitidis. Applied Sciences (Switzerland), 10(17), Article 6113. https://doi.org/10.3390/app10176113

Keshavarz, M., Debroye, E., Ottesen, M., Martin, C., Zhang, H., Fron, E., Küchler, R., Steele, J. A., Bremholm, M., Van de Vondel, J., Wang, H. I., Bonn, M., Roeffaers, M. B. J., Wiedmann, S. & Hofkens, J. (2020). Tuning the Structural and Optoelectronic Properties of Cs₂AgBiBr₆ Double-Perovskite Single Crystals through Alkali-Metal Substitution. Advanced Materials, 32(40), Article 2001878. https://doi.org/10.1002/adma.202001878

Arge, L., Rav, M., Revsbæk, M., Shin, Y. & Yang, J. (2020). Sea-rise flooding on massive dynamic terrains. In S. Albers (Ed.), 17th Scandinavian Symposium and Workshops on Algorithm Theory, SWAT 2020 (pp. 6:1-6:19). Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.SWAT.2020.6

Pedersen, B. P., Kropp, K., Dalsgaard, P. & Dimke, H. (2020). Debat: Der er akut behov for en hjælpepakke til unge forskere. Altinget. https://www.altinget.dk/forskning/artikel/debat-der-er-akut-behov-for-en-hjaelpepakke-til-unge-forskere

Bjørk, R., Dalsgaard, P., Dimke, H., Jauffred, L., Kropp, K., Laustsen, A. H., Pedersen, B. P., Sørensen, T. J. & Vallgårda, K. A. A. (2020). Nej, Ane Halsboe-Jørgensen, forskningsmidler skal ikke bruges på erhvervsstøtte. Information, Article e7e2a869. https://www.information.dk/debat/2020/09/nej-ane-halsboe-joergensen-forskningsmidler-bruges-paa-erhvervsstoette

Kapun, M., Barrón, M. G., Staubach, F., Obbard, D. J., Wiberg, R. A. W., Vieira, J., Goubert, C., Rota-Stabelli, O., Kankare, M., Bogaerts-Márquez, M., Haudry, A., Waidele, L., Kozeretska, I., Pasyukova, E. G., Loeschcke, V., Pascual, M., Vieira, C. P., Serga, S., Montchamp-Moreau, C. ... González, J. (2020). Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses. Molecular Biology and Evolution, 37(9), 2661-2678. https://doi.org/10.1093/molbev/msaa120

Larsen, K. G., Mitzenmacher, M. & Tsourakakis, C. E. (2020). Optimal Learning of Joint Alignments with a Faulty Oracle. In 2020 IEEE International Symposium on Information Theory, ISIT 2020 (pp. 2492-2497). IEEE. https://doi.org/10.1109/ISIT44484.2020.9174310

Zhang, K., Zhou, J., Tao, D., Karras, P., Li, Q. & Xiong, H. (2020). Geodemographic Influence Maximization. In KDD '20: Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining (pp. 2764-2774). Association for Computing Machinery. https://doi.org/10.1145/3394486.3403327

Olivier, F., Gaillard, B., Thébault, J., Meziane, T., Tremblay, R., Dumont, D., Bélanger, S., Gosselin, M., Jolivet, A., Chauvaud, L., Martel, A. L., Rysgaard, S., Olivier, A. H., Pettré, J., Mars, J., Gerber, S. & Archambault, P. (2020). Shells of the bivalve Astarte moerchi give new evidence of a strong pelagic-benthic coupling shift occurring since the late 1970s in the North Water polynya. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 378(2181), Article 20190353. https://doi.org/10.1098/rsta.2019.0353

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