Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Laursen, S. F., Hansen, L. S., Bahrndorff, S., Nielsen, H. M., Sahana, G., Sørensen, J. G., Ørsted, M. & Kristensen, T. N. (2025). Genotype-by-environment interactions for mean performance and trait variation in house fly larvae reared on two diets. Entomologia Experimentalis et Applicata, 173(6), 575-589. https://doi.org/10.1111/eea.13530

Yin, M., Zhang, X., Zhu, H., Sheng, W., Wu, Y., Jiang, D., Wen, Q., Shao, H., Guo, Y., Wang, C., Ma, L., Yu, X., Brix, H., Liu, L. & Guo, W. (2024). Trade-offs between Cd bioconcentration and translocation and underlying physiological and rhizobacterial mechanisms in Phragmites australis. Journal of Environmental Management, 371, Article 123291. https://doi.org/10.1016/j.jenvman.2024.123291

Wang, K., Rasmussen, B. B., Thomsen, D., Zhang, Y., Jensen, M. M., Kristensen, K., Hoffmann, T., Glasius, M. & Bilde, M. (2024). Influence of Candle Emissions on Monoterpene Oxidation Chemistry and Secondary Organic Aerosol. Environmental Science & Technology, 58(48), 21265–21274. https://doi.org/10.1021/acs.est.4c04075

Ji, Q. Q., Xie, Z., Wu, Y., Wan, Z., Xu, C., Wu, D., Chen, T. W. & Ordonez, A. (2024). Intraspecific trait variation of carrion beetle species and communities across elevations. Insect Conservation and Diversity, 17(6), 1113-1126. https://doi.org/10.1111/icad.12772

Maraia, H., Charles-Dominique, T., Tomlinson, KW., Staver, AC., Jorge, LR., Gélin, U., Jancuchova-Laskova, J., Sam, L., Hattas, D., Freiberga, I. & Sam, K. (2024). Substantial Insect Herbivory in a South African Savanna-Forest Mosaic: A Neglected Topic. Ecology and Evolution, 14(11), Article e70466. https://doi.org/10.1002/ece3.70466

Lin, Y., Rasmussen, M. H., Christensen, M. H., Frydendahl, A., Maretty, L., Andersen, C. L. & Besenbacher, S. (2024). Evaluating Bioinformatics Processing of Somatic Variant Detection in cfDNA Using Targeted Sequencing with UMIs. International Journal of Molecular Sciences , 25(21), Article 11439. https://doi.org/10.3390/ijms252111439

Ng, K. S., Bambace, M. F., Andersen, E. B., Meyer, R. L. & Schwab, C. (2024). Environmental pH and compound structure affect the activity of short-chain carboxylic acids against planktonic growth, biofilm formation, and eradication of the food pathogen Salmonella enterica. Microbiology Spectrum, 12(11), Article e0165824. https://doi.org/10.1128/spectrum.01658-24

Bian, T., Pei, Y., Gao, S., Zhou, S., Sun, X., Dong, M. & Song, J. (2024). Xeno Nucleic Acids as Functional Materials: From Biophysical Properties to Application. Advanced Healthcare Materials, 13(28), Article 2401207. https://doi.org/10.1002/adhm.202401207

Vangoor, V. R., Giuliani, G., de Wit, M., Rangel, C. K., Venø, M. T., Schulte, J. T., Gomes-Duarte, A., Senthilkumar, K., Puhakka, N., Kjems, J., de Graan, P. N. E. & Pasterkamp, R. J. (2024). Compartment-specific small non-coding RNA changes and nucleolar defects in human mesial temporal lobe epilepsy. Acta Neuropathologica, 148(1), Article 61. https://doi.org/10.1007/s00401-024-02817-8

Sørensen, D. R., Gordon, R., Smith, A., Kantor, I. & Jørgensen, M. R. V. (2024). In Operando Evaluation of Heterogeneity Development in Fast-Cycled Single-Layer Pouch Cells. Chemistry of Materials, 36(21), 10871-10885. https://doi.org/10.1021/acs.chemmater.4c01483

Jensen, K., Thormose, S., Noer, N. K., Schou, T. M., Kargo, M., Gligorescu, A., Nørgaard, J. V., Zaalberg, R. M., Nielsen, H. M. & Kristensen, T. N. (2024). Consecutive mating of black soldier fly males to produce full- and half-sibling offspring. Abstract from EAAP Florence, Italy.

Klapproth, C., Msapato, D. & Shah, A. (2024). Idempotent Completions of n-Exangulated Categories. Applied Categorical Structures, 32(1), Article 7. https://doi.org/10.1007/s10485-023-09758-5

Bennett-Tennenhaus, R., Haugland, J., Sandøy, M. H. & Shah, A. (2024). THE CATEGORY OF EXTENSIONS AND IDEMPOTENT COMPLETION. Theory and Applications of Categories, 41, 1077-1107. Article 33.

Baudoin, F. (2024). Korevaar–Schoen–Sobolev spaces and critical exponents in metric measure spaces. Annales Fennici Mathematici, 49(2), 487-527. https://doi.org/10.54330/AFM.147513

Baudoin, F. & Chen, L. (2024). Heat kernel gradient estimates for the Vicsek set. Mathematische Nachrichten, 297(12), 4450-4477. https://doi.org/10.1002/mana.202400180

Baudoin, F. & Kuijper, T. (2024). On the law of the index of Brownian loops related to the Hopf and anti-de Sitter fibrations.

Baudoin, F., Chen, H. & Ouyang, C. (2024). Moment estimates for the stochastic heat equation on Cartan-Hadamard manifolds.

Dörnemann, N. & Dette, H. (2024). Detecting Change Points of Covariance Matrices in High Dimensions.

Borg, K. N., Shetty, A., Cheng, G., Zhu, S., Wang, T., Ho, H. P., Knudsen, B. R., Tesauro, C. & Ho, Y.-P. (2024). Hydrogel bead-based isothermal detection (BEAD-ID) for assessing the activity of DNA-modifying enzymes. iScience, 27(12), Article 111332. https://doi.org/10.1016/j.isci.2024.111332

Schulz, H.-J., Aupetit, M. & Fisher, D. (2024). Human Aspects. In J.-D. Fekete, D. Fisher & M. Sedlmair (Eds.), Progressive Data Analysis: Roadmap and Research Agenda (pp. 108-131). Eurographics Association. https://doi.org/10.2312/pda.20242707

Faghtmann, J., Pladsbjerg Andresen, S. S., Rask Østergaard, A. & Anker Jørgensen, K. (2025). Enantioselective Cascade Reactions of Aminocatalytic Dienamines and Trienamines Initiated by a Cycloaddition Reaction. Chemistry - A European Journal, 31(1), Article e202403656. https://doi.org/10.1002/chem.202403656

Christensen, E. R., Camacho-Guardin, A., Cotlet, O., Imamoglu, A., wouters, M., Bruun, G. & Carusotto, I. (2024). Microscopic theory of polariton-polariton interactions. Physical Review B, 110(19), Article 195435. https://doi.org/10.1103/PhysRevB.110.195435

Hwang, C., Feuchtner, T. & Grønbæk, K. (2025). Pseudo-Haptics for Weight Perception in VR: Controller vs. Bare Hand Interactions with Tracking Delay and Vertical Offset. In 2024 10th International Conference on Virtual Reality, ICVR 2024 (pp. 91-99) https://doi.org/10.1109/ICVR62393.2024.10868891

Parisy, B., Schmidt, N. M., Cirtwill, A. R., Villa-Galaviz, E., Tiusanen, M., Klütsch, C. F. C., Aspholm, P. E., Raundrup, K., Vesterinen, E. J., Wirta, H. & Roslin, T. (2024). Arctic plant-fungus interaction networks show major rewiring with environmental variation. Communications Earth & Environment, 5(1), Article 735. https://doi.org/10.1038/s43247-024-01902-w

Neumann, L., Guimaraes, A., Aranha, D. F. & Borin, E. (2025). Homomorphic WiSARDs: Efficient Weightless Neural Network training over encrypted data. In M. Fischlin & V. Moonsamy (Eds.), Applied Cryptography and Network Security - 23rd International Conference, ACNS 2025, Proceedings (pp. 309-338) https://doi.org/10.1007/978-3-031-95767-3_12

Han, X., Zhang, T., Biset-Peiró, M., Roldan, A., Ceccato, M., Lock, N., Pedersen, S. U., Morante, J. R., Arbiol, J. & Daasbjerg, K. (2025). Mesopore-Augmented Electrochemical CO₂ Reduction on Nitrogen-Doped Carbon. Small (Weinheim an der Bergstrasse, Germany), 21(10), Article 2406883. https://doi.org/10.1002/smll.202406883

Borg, K. N., Shetty, A., Cheng, G., Zhu, S., Wang, T., Yuan, W., Ho, H. P., Knudsen, B. R., Tesauro, C. & Ho, Y. P. (2024). Hydrogel bead-based isothermal detection (BEAD-ID) for assessing the activity of DNA-modifying enzymes. iScience, 27(12), Article 111332. https://doi.org/10.1016/j.isci.2024.111332

Chen, S. C., Chen, S., Musat, N., Kümmel, S., Ji, J., Lund, M. B., Gilbert, A., Lechtenfeld, O. J., Richnow, H. H. & Musat, F. (2024). Back flux during anaerobic oxidation of butane support archaea-mediated alkanogenesis. Nature Communications, 15(1), Article 9628. https://doi.org/10.1038/s41467-024-53932-9

Chiaramonti, D., Lotti, G., Vaccari, F. P. & Sanei, H. (2024). Assessment of long-lived Carbon permanence in agricultural soil: Unearthing 15 years-old biochar from long-term field experiment in vineyard. Biomass and Bioenergy, 191, Article 107484. https://doi.org/10.1016/j.biombioe.2024.107484

Thyrring, J., Peck, L. S., Sejr, M. K., Węsławski, J. M., Harley, C. D. G. & Menegotto, A. (2024). Shallow coverage in shallow waters: the incompleteness of intertidal species inventories in biodiversity database records. Ecography, 2024(12), Article e07006. https://doi.org/10.1111/ecog.07006

Újvári, G., Schneider, R., Stevens, T., Rinyu, L., Ilona Kiss, G., Buylaert, J. P., Sean Murray, A., Challier, A. J. M., Kurbanov, R., Khormali, F., Benedek, J., Temovski, M., Vargas, D. & Palcsu, L. (2024). Absolute ²³⁰Th/U chronologies and Δ₄₇ thermometry paleoclimate reconstruction from soil carbonates in Central Asian loess over the past 1 million years. Geochimica et Cosmochimica Acta, 386, 110-126. https://doi.org/10.1016/j.gca.2024.09.008

Livingston, J. H., Gandolfi, D., Trani, A. A., Herath, M., Barragán, O., Hatzes, A., Luque, R., Fukui, A., Nowak, G., Palle, E., Hellier, C., Fridlund, M., de Leon, J., Hirano, T., Narita, N., Albrecht, S., Dai, F., Deeg, H., Van Eylen, V. ... Tamura, M. (2024). An ultra-short-period super-Earth with an extremely high density and an outer companion. Scientific Reports, 14(1), Article 27219. https://doi.org/10.1038/s41598-024-76490-y

Kristensen, J., Barbero-Palacios, L., Barrio, I. C., Jacobsen, I. B. D., Kerby, J. T., López-Blanco, E., Malhi, Y., Le Moullec, M., Mueller, C. W., Post, E., Raundrup, K. & Macias-Fauria, M. (2024). Tree planting is no climate solution at northern high latitudes. Nature Geoscience, 17(11), 1087-1092. https://doi.org/10.1038/s41561-024-01573-4

Caragiannis, I., Filos-Ratsikas, A., Frederiksen, S. K. S., Hansen, K. A. & Tan, Z. (2024). Truthful facility assignment with resource augmentation: an exact analysis of serial dictatorship. Mathematical Programming, 203(1-2), 901-930. https://doi.org/10.1007/S10107-022-01902-8

Ashall, C., Hoeflich, P., Baron, E., Shahbandeh, M., DerKacy, J. M., Medler, K., Shappee, B. J., Tucker, M. A., Fereidouni, E., Mera, T., Andrews, J., Baade, D., Bostroem, K. A., Brown, P. J., Burns, C. R., Burrow, A., Cikota, A., de Jaeger, T., Do, A. ... Yang, Y. (2024). A JWST Medium-resolution MIRI Spectrum and Models of the Type Ia Supernova 2021aefx at +415 days. Astrophysical Journal, 975(2), Article 203. https://doi.org/10.3847/1538-4357/ad6608

Cavaletto, S. M. & Madsen, L. B. (2024). Simulating strong-field electron-hole dynamics in solids probed by attosecond transient absorption spectroscopy. Physical Review A, 110(5), Article 053111. https://doi.org/10.1103/PhysRevA.110.053111

Zhong, Z., Zhou, K. & Mottin, D. (2024). Harnessing Large Language Models as Post-hoc Correctors. In L.-W. Ku, A. Martins & V. Srikumar (Eds.), Findings of the Association for Computational Linguistics: ACL 2024 (pp. 14559-14574). Association for Computational Linguistics (ACL). https://doi.org/10.18653/v1/2024.findings-acl.867

Zhong, Z. & Mottin, D. (2024). Efficiently Predicting Mutational Effect on Homologous Proteins by Evolution Encoding. In A. Bifet, J. Davis, T. Krilavičius, M. Kull, E. Ntoutsi & I. Žliobaitė (Eds.), Machine Learning and Knowledge Discovery in Databases. Research Track: European Conference, ECML PKDD 2024, Vilnius, Lithuania, September 9–13, 2024, Proceedings, Part VII (pp. 399-415). Springer Science+Business Media. https://doi.org/10.1007/978-3-031-70368-3_24

Petsinis, P., Pavlogiannis, A., Tkadlec, J. & Karras, P. (2024). Seed Selection in the Heterogeneous Moran Process. In K. Larson (Ed.), Proceedings of the 33rd International Joint Conference on Artificial Intelligence, IJCAI 2024 (pp. 2297-2305). International Joint Conferences on Artificial Intelligence Organization. https://doi.org/10.24963/ijcai.2024/254

Petsinis, P., Zhang, K., Pavlogiannis, A., Zhou, J. & Karras, P. (2024). Robust Reward Placement under Uncertainty. In K. Larson (Ed.), Proceedings of the 33rd International Joint Conference on Artificial Intelligence, IJCAI 2024 (pp. 6770-6778). International Joint Conferences on Artificial Intelligence Organization. https://doi.org/10.24963/ijcai.2024/748

Bommakanti, A., Vonteri, H. R., Skitsas, K., Ranu, S., Mottin, D. & Karras, P. (2024). FUGAL: Feature-fortified Unrestricted Graph Alignment. Paper presented at The Thirty-eighth Annual Conference on Neural Information Processing Systems.

Shi, Z., Mathur, U. & Pavlogiannis, A. (2024). Optimistic Prediction of Synchronization-Reversal Data Races. In Proceedings - 2024 ACM/IEEE 44th International Conference on Software Engineering, ICSE 2024: Proceedings of the IEEE/ACM 46th International Conference on Software Engineering (pp. 1-13). Article 134 Association for Computing Machinery. https://doi.org/10.1145/3597503.3639099

Ma, W., Egger, M. K., Pavlogiannis, A., Li, Y. & Karras, P. (2024). Reachability-Aware Fair Influence Maximization. In W. Zhang, Z. Yang, X. Wang, A. Tung, Z. Zheng & H. Guo (Eds.), Web and Big Data - 8th International Joint Conference, APWeb-WAIM 2024, Proceedings: 8th International Joint Conference, APWeb-WAIM 2024, Jinhua, China, August 30 – September 1, 2024, Proceedings, Part III (pp. 342-359). BMJ, Springer Nature. https://doi.org/10.1007/978-981-97-7238-4_22

Mahrík, M., Šikyňa, M., Mic, V. & Zezula, P. (2025). Towards Personalized Similarity Search for Vector Databases. In E. Chávez, B. Kimia, J. Lokoč, M. Patella & J. Sedmidubsky (Eds.), Similarity Search and Applications - 17th International Conference, SISAP 2024, Proceedings (pp. 126-139). Springer. https://doi.org/10.1007/978-3-031-75823-2_11

Zhu, Y., Honnet, C., Kang, Y., Zhu, J., Zheng, A. J., Heinz, K., Tang, G., Musk, L., Wessely, M. & Mueller, S. (2024). PortaChrome: A Portable Contact Light Source for Integrated Re-Programmable Multi-Color Textures. In UIST 2024 - Proceedings of the 37th Annual ACM Symposium on User Interface Software and Technology: Proceedings of the 37th Annual ACM Symposium on User Interface Software and Technology (pp. 1-13). Article 18 Association for Computing Machinery. https://doi.org/10.1145/3654777.3676458

Høgsgaard, M. M., Larsen, K. G. & Mathiasen, M. E. (2024). The Many Faces of Optimal Weak-to-Strong Learning. https://arxiv.org/pdf/2408.17148

Moesgaard, J., Fujita, T. & Wei, S. (2025). Unveiling the boson peaks in amorphous phase-change materials. Journal of Physics: Condensed Matter, 37(2), Article 025101. https://doi.org/10.1088/1361-648X/ad80ef

Protzenko, J. & Spitters, B. (2024). Modernizing FIPS for safe languages and verified libraries. Paper presented at NIST Workshop on Formal Methods within Certification Programs (FMCP 2024), Rockville, Maryland, United States. https://www.nist.gov/system/files/documents/2024/06/11/08-ProtzenkoSpitters.pdf

Dalagnol, L. V. S., Kumar, S., Souza Barbosa, A., Akther, U. S., Jones, N. C., Hoffmann, S. V., Bettega, M. H. F. & Limao-Vieira, P. (2024). Symmetry breaking in the lowest-lying excited state of CCl₄: Valence shell spectroscopy in the 5.0 – 10.8 eV Photon Energy Range. Molecules, 29(23), Article 5619. https://doi.org/10.3390/molecules29235619

Fehr, V., Moretti, M., Pezzatti, G. B., Guidotti, G., Rasmann, S., Handa, I. T., Buitenwerf, R. & Svenning, J. C. (2024). Non-native palm affects arthropod communities and litter decomposition in an ongoing biome shift. Global Ecology and Conservation, 56, Article e03303. https://doi.org/10.1016/j.gecco.2024.e03303

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