Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Nielsen, L., Skrydstrup, T. & Lindsay, K. (2008). Synthesis of Silanediol Peptide Mimic Precursors. Poster session presented at The 15th International Symposium on Organosilicon Chemistry, Haevichi, Jeju, Korea, Republic of.

Hansen, M. B., Toffoli, D., Christiansen, O. & Kongsted, J. (2008). Vibrational contributions to indirect spin-spin coupling constants calcualted via variational anharmoic approaches. Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory, 112, 8436-8445.

Kyhn, L. A., Tougaard, J., Madsen, P. T., Wilson, M., Miller, L., Rasmussen, M., Wahlberg, M. & Eriksen, N. (2008). Lyd i Oceanerne: Galathea3. In L. Nannested Jørgensen (Ed.), Galathea 3 2006-2007: Dansk Ekspeditionsfond (pp. 147-151). Thaning & Appel. http://130.226.56.153/rispubl/Galathea/galathea_147-151.pdf

Madsen, L. (2008). Page Styles on steroids: or, memoir makes page styling easy. PracTeX Journal, (2). http://www.tug.org/pracjourn/2008-2/madsen/

Ding, Z., Mailund, T. & Song, Y. (2008). Efficient Whole-Genome Association Mapping using Local Phylogenies for Unphased Genome Data. Bioinformatics, 2215-2221.

Vang, R. T., Lauritsen, J. V., Lægsgaard, E. & Besenbacher, F. (2008). Scanning tunneling microscopy as a tool to study catalytically relevant model systems. Chemical Society Reviews, 37, 2191-2203. https://doi.org/10.1039/b800307f

Bøttger, P. & Pedersen, L. (2006). Ven og fjende - om fosfors to ansigter. Aktuel Naturvidenskab, 6, 21-23.

Djernes, J. K., Gulmann, N. C., Ibsen, M., Foldager, L., Olesen, F. & Munk-Jørgensen, P. (2008). A follow-up of elderly depressed patients. Nordic Journal of Psychiatry, 62(3), 233-41. https://doi.org/10.1080/08039480802088296

Bøttger, P. & Pedersen, L. (2002). Two highly conserved glutamate residues critical for type III sodium-dependent phosphate transport revealed by uncoupling transport function from retroviral receptor function. Journal of Biological Chemistry, 227, 42721-42747.

Bøttger, P. & Pedersen, L. (2004). The central half of Pit2 is not required for its function as a retroviral receptor. J. Virol., 78, 9564-9567.

Bøttger, P. & Pedersen, L. (2005). Evolutionary and experimental analyses of inorganic phosphate transporter PiT family reveal two related signature sequences harboring highly conserved aspartic acids critical for sodium-dependent phosphate transport function of human PiT2. FEBS journal, 272, 3060-3074.

Bøttger, P., Tracz, Z., Pelc, M., Albertsen, M., Strandbygård, D. J., Romero-Ramos, M. & Lykke-Andersen, K. (2008). Transgenic mouse models for two inherited neuronal diseases. Poster session presented at 12th International ATPase Conference, Aarhus, Denmark.

Bøttger, P. & Pedersen, L. (2006). Cellular down-regulation of the type III sodium-dependent inorganic phosphate transporter, PiT2, in response to hyperphosphatemic conditions. Poster session presented at Ph.D. day 2006, Aarhus, Denmark.

Bøttger, P. & Pedersen, L. (2003). Cellular regulation of the type III sodium-dependent phosphate transporter, Pit2, in response to hyperphosphatemic conditions. Poster session presented at Scandinavian Congress of Physiology and Pharmacology, Odense, Denmark.

Bøttger, P. & Pedersen, L. (2002). Structural requirements for retroviral entry via type III sodium-dependent phosphate transporters. Poster session presented at The 2002 International Workshop on Retroviral Pathogenesis, Indian Wells, CA, United States.

Bøttger, P. & Pedersen, L. (2001). Two glutamates critical for NaPi transport function revealed by exploring the dual functions of Pit2. Poster session presented at Scandinavian Physiological Society meeting, Aarhus, Denmark.

Bøttger, P. & Pedersen, L. (2001). No correlation between retroviral receptor function and transport function of retroviral receptor PiT2. Poster session presented at Retroviruses, Cold Spring Harbor laboratories, NY, United States.

Piil, R. T., Nygaard, N. & Mølmer, K. (2008). Scattering and binding of different atomic species in a one-dimensional optical lattice. Physical Review A, 78(033611). https://doi.org/10.1103/PhysRevA.78.033611

Martiny, C. & Madsen, L. B. (2008). Ellipticity dependence of the validity of the saddle-point method in strong-field ionization by few-cycle laser pulses. Physical Review A, 78(043404). https://doi.org/10.1103/PhysRevA.78.043404

Brauner, E. V., Møller, P., Barregard, L., Dragsted, L. O., Glasius, M., Wåhlin, P., Vinzents, P., Raaschou-Nielsen, O. & Loft, S. (2008). Exposure to ambient concentrations of particulate air pollution does not influence vascular function or inflammatory pathways in young healthy individuals. Particle and Fibre Toxicology, 5(13), online. https://doi.org/10.1186/1743-8977-5-13

Jørgensen, N. O. & Heinemeier, J. (2008). Origin of brackish groundwater in a sandstone aquifer on Bornholm, Denmark. Hydrology Research, 39(3), 209-222.

Kjeldbjerg, A., Villesen, P., Aagaard, L. & Pedersen, F. S. (2008). Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution. BMC Evolutionary Biology, 8(1), 266. https://doi.org/10.1186/1471-2148-8-266

Nielsen, M., Engberg, U. H. & Larsen, K. S. (1988). Fully abstract models for a process language with refinement. In J. W. de Bakker, W. P. de Roever & G. Rozenberg (Eds.), REX Workshop: Linear Time, Branching Time and Partial Order in Logics and Models for Concurrency, School/Workshop (pp. 523-548). Springer. https://doi.org/10.1007/BFb0013034

Engberg, U. H. & Winskel, G. (1990). Petri Nets as Models of Linear Logic. In A. Arnold (Ed.), CAAP '90: 15th Colloquium on Trees in Algebra and Programming (pp. 147-161). Springer.

Aceto, L. & Engberg, U. H. (1991). Failures Semantics for a Simple Process Language with Refinement. In S. Biswas & K. V. Nori (Eds.), FSTTCS '91: Foundations of Software Technology and Theoretical Computer Science, 11th Conference (pp. 89-108). Springer LNCS.

Engberg, U. H. & Winskel, G. (1993). Linear Logic on Petri Nets. In J. W. de Bakker, W. P. de Roever & G. Rozenberg (Eds.), REX School/Symposium: A Decade of Concurrency, Reflections and Perspectives (pp. 176-229). Springer LNCS.

Engberg, U. H. & Winskel, G. (1993). Completeness Results for Linear Logic on Petri Nets. In A. M. Borzyszkowski & S. Sokolowski (Eds.), MFCS '93: Mathematical Foundations of Computer Science 1993, 18th International Symposium (pp. 442-452). Springer LNCS.

Engberg, U. H. & Nielsen, M. (2000). A Calculus of Communicating Systems with Label Passing – Ten Years After. In G. D. Plotkin, C. Stirling & M. Tofte (Eds.), Proof, Language, and Interaction: Essays in Honour of Robin Milner (pp. 599-622). MIT Press.

Engberg, U. H. & Nielsen, M. (1986). A Calculus of Communicating Systems with Label Passing. Aarhus Universitetsforlag. Daimi Report Series (DAIMI PB) No. 208 http://www.daimi.au.dk/PB/208/PB-208.pdf

Engberg, U. H. (1990). True Concurrency can be Traced. Daimi Report Series (DAIMI PB) No. PB-308

Engberg, U. H., Nielsen, M. & Winskel, G. (Eds.) (1991). Models, Languages and Logics for Concurrent Distributed Systems: CEDISYS Workshop (Aarhus, 1991, May 21-24). Department of Computer Science, Aarhus University. Daimi Report Series (DAIMI PB) No. 392

Engberg, U. H. & Winskel, G. (1993). Completeness Results for Linear Logic on Petri Nets. Daimi Report No. PB-435

Engberg, U. H. & Larsen, K. S. (1995). Efficient Simplification of Bisimulation Formulas. In E. Brinksma, R. Cleaveland, K. G. Larsen, T. Margaria & B. Steffen (Eds.), TACAS '95: Tools and Algorithms for Construction and Analysis of Systems, First International Workshop (pp. 111-132). Springer LNCS.

Kragh, H. (2008). Er der plads til mirakler i naturvidenskaben? In B. H. Callesen & S. Grumsen (Eds.), Mirakler (pp. 27-40). Aarhus Universitetsforlag.

Petersen, M. G., Dewilde, S. & Fago, A. (2008). Reactions of ferrous neuroglobin and cytoglobin with nitrite under anaerobic conditions. Journal of Inorganic Biochemistry, 102, 1777-1782. https://doi.org/10.1016/j.jinorgbio.2008.05.008

Lambertini, C., Frydenberg, J., Gustafsson, M. & Brix, H. (2008). Herbarium specimens as a source of DNA for AFLP fingerprinting of Phragmites (Poaceae): possibilities and limitations. Plant Systematics and Evolution, 272, 223-231.

Jantzen, J. C. (2008). Character formulae from Hermann Weyl to the present. In K. Tent (Ed.), Groups and Analysis: The legacy of Hermann Weyl (pp. 232-270). Cambridge University Press.

van Cong, N., Phuong, N. T. & Bayley, M. (2008). Brain cholinesterase response in the snakehead fish (Channa striata) after field exposure to diazinon. Ecotoxicology and Environmental Safety, 71, 314-318. https://doi.org/10.1016/j.ecoenv.2008.04.005

Overton, J. L., Bayley, M., Paulsen, H. & Wang, T. (2008). Salinity tolerance of cultured Eurasian perch, Perca fluviatilis L.: Effects on growth and on survival as a function of temperature. Aquaculture, 277, 282-286. https://doi.org/10.1016/j.aquaculture.2008.02.029

Jensen, S. J., Oliveira, C. L. P. D., Nielsen, C. J. F., Pedersen, J. S., Andersen, F. F. & Knudsen, B. R. (2008). Structure of Human Topoisomerase I in Solution. Abstract from Structure of Human Topoisomerase I in Solution, København, Denmark.

Jensen, S. J., Oliveira, C. L. P. D., Nielsen, C. J. F., Pedersen, J. S., Andersen, F. F. & Knudsen, B. R. (2008). Structure of human Topoisomerase in Solution. Poster session presented at Nanotech 2008, København, Denmark.

Matamoros, V., Arias, C. A., Brix, H. & Bayona, J. M. (2009). Preliminary screening of small-scale domestic wastewater treatment systems for removal of pharmaceutical and personal care products. Water Research, 43, 55-62.

Lassen, K. B. & van der Aalst, W. M. P. (2009). Complexity Metrics for Workflow Nets. Information and Software Technology, 51(3), 610-626.

Mans, R. S., van der Aalst, W. M. P., Molemann, A. J., Bakker, P. J. M., Lassen, K. B. & Jørgensen, J. B. (2007). From Requirements via Colored Workflow Nets to an Implementation in Several Workflow Systems. Daimi Report Series (DAIMI PB), PB-584, 187-206.

Jensen, J., Madsen, P. & Sorensen, D. A. (1992). Use of supercomputing in quantitative genetics. In Supercomputing Annual Report UNI-C, Lyngby.

Andersen, B. B., Christensen, L. G. & Pedersen, G. A. (1994). Aktuelle egenskaber i kvægavlen. In Moderne Kvægavl (2 ed., Vol. 2, pp. 39-60)

Halekoh, U. & Degens, P. O. (1994). Least squares smoothers and additive decomposition. In E. Diday, Y. Lechevallier, M. Schader, P. Bertrand, B. Burtschy & Heidelberg (Eds.), New approaches in classification and data analysis (pp. 549-555). Springer.

Kjærgaard, P. C., Bek-Thomsen, J., Grumsen, S., Hjermitslev, H. H., Jørgensen, M. E. & Skov Pedersen, R. (2008). Darwinkalenderen 2009: 200-året for Darwins fødsel og 150-året for udgivelsen af Om arternes oprindelse. Frydenlund Academic.

Cuoco, A. & Hannestad, S. (2008). Ultra-high energy Neutrinos from Centaurus A and the Auger hot spot. Physical Review D, 78(023007). https://doi.org/10.1103/PhysRevD.78.023007

Cuoco, A., Brandbyge, J., Hannestad, S., Haugbølle, T. & Miele, G. (2008). Angular Signatures of Annihilating Dark Matter in the Cosmic Gamma-Ray Background. Physical Review D, 77(123518). https://doi.org/10.1103/PhysRevD.77.123518

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