Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Kyhn, L. A. & Tougaard, J. (2021). Kattegat south: Assessment of impact from pre-project surveys. Aarhus University, DCE - Danish Centre for Environment and Energy. Scientific Report from DCE - Danish Centre for Environment and Energy No. 423 http://dce2.au.dk/pub/SR423.pdf

Claes, N., Paige, G. B., Gordon, B. L., Parsekian, A. D. & Miller, S. N. (2021). Hydrologic modeling of reach scale fluxes from flood irrigated fields. Journal of Hydrology, 598, Article 126254. https://doi.org/10.1016/j.jhydrol.2021.126254

Christensen, H. B. (2021). Flexible, Reliable Software, 2nd Edition, Part II: The Programming Process.

Christensen, H. B. (2021). Flexible, Reliable Software, 2nd Edition, Part I: Basic Terminology.

Christensen, H. B. (2021). MiniDraw: A teaching oriented 2D graphics, direct manipulation, framework: Release 2.0. Computer programme, mvnrepository.com.

Rasmussen, C., Dupont, Y. L., Madsen, H. B., Bogusch, P., Goulson, D., Herbertsson, L., Maia, K. P., Nielsen, A., Olesen, J. M., Potts, S. G., Roberts, S. P. M., Sydenham, M. A. K. & Kryger, P. (2021). Evaluation competition for forage plants between honey bees and wild bees in Denmark. PLoS One, 16(4), Article e0250056. https://doi.org/10.1371/journal.pone.0250056

Bocková, J., Jones, N. C., Meierhenrich, U. J., Hoffmann, S. V. & Meinert, C. (2021). Chiroptical activity of hydroxycarboxylic acids: implications for the origin of biological homochirality. Communications Chemistry, 4(1), Article 86. https://doi.org/10.1038/s42004-021-00524-z

Bennike, O., Jensen, J. B., Nørgaard-Pedersen, N., Andresen, K. J., Seidenkrantz, M. S., Moros, M. & Wagner, B. (2021). When were the straits between the Baltic Sea and the Kattegat inundated by the sea during the Holocene? Boreas, 50(4), 1079-1094. https://doi.org/10.1111/bor.12525

Cockell, C. S., Santomartino, R., Finster, K., Waajen, A. C., Nicholson, N., Loudon, C. M., Eades, L. J., Moeller, R., Rettberg, P., Fuchs, F. M., Van Houdt, R., Leys, N., Coninx, I., Hatton, J., Parmitano, L., Krause, J., Koehler, A., Caplin, N., Zuijderduijn, L. ... Demets, R. (2021). Microbially-Enhanced Vanadium Mining and Bioremediation Under Micro- and Mars Gravity on the International Space Station. Frontiers in Microbiology, 12, Article 641387. https://doi.org/10.3389/fmicb.2021.641387

Shlimon, A. G., Mansurbeg, H., Othman, R., Head, I., Kjeldsen, K. U. & Finster, K. (2021). Identity and hydrocarbon degradation activity of enriched microorganisms from natural oil and asphalt seeps in the Kurdistan Region of Iraq (KRI). Biodegradation, 32(3), 251-271. https://doi.org/10.1007/s10532-021-09931-4

Zhu, Z., Difford, G., Noel, S. J., Lassen, J., Løvendahl, P. & Hojberg, O. (2021). Stability Assessment of the Rumen Bacterial and Archaeal Communities in Dairy Cows Within a Single Lactation and Its Association With Host Phenotype. Frontiers in Microbiology, 12, Article 636223. https://doi.org/10.3389/fmicb.2021.636223

Wan Mahari, W. A., Azwar, E., Foong, S. Y., Ahmed, A., Peng, W., Tabatabaei, M., Aghbashlo, M., Park, Y. K., Sonne, C. & Lam, S. S. (2021). Valorization of municipal wastes using co-pyrolysis for green energy production, energy security, and environmental sustainability: A review. Chemical Engineering Journal, 421(Part 1), Article 129749. https://doi.org/10.1016/j.cej.2021.129749

Pedersen, B. H., Malte, H., Finster, K. & Ramløv, H. (2021). Respiration Measurements of Individual Tardigrades of the Species Richtersius cf coronifer as a Function of Temperature and Salinity and Termination of Anhydrobiosis. Astrobiology, 21(7), 853-865. https://doi.org/10.1089/ast.2020.2371

Vera-Puerto, I., Valdes, H., Correa, C., Perez, V., Gomez, R., Alarcon, E. & Arias, C. A. (2021). Evaluation of Bed Depth Reduction, Media Change, and Partial Saturation as Combined Strategies to Modify in Vertical Treatment Wetlands. International Journal of Environmental Research and Public Health, 18(9), Article 4842. https://doi.org/10.3390/ijerph18094842

Garde, H. & Hyvönen, N. (2022). Series reversion in Calderón's problem. Mathematics of Computation, 91(336), 1925-1953. https://doi.org/10.1090/mcom/3729

Laursen, S. F., Hansen, L. S., Bahrndorff, S., Nielsen, H. M., Noer, N. K., Renault, D., Sahana, G., Sørensen, J. G. & Kristensen, T. N. (2021). Contrasting Manual and Automated Assessment of Thermal Stress Responses and Larval Body Size in Black Soldier Flies and Houseflies. Insects, 12(5), Article 380. https://doi.org/10.3390/insects12050380

Andersen, L. E. & Wray, K. B. (2023). Rethinking the Value of Author Contribution Statements in Light of How Research Teams Respond to Retractions. Episteme, 20(2), 265-280. https://doi.org/10.1017/epi.2021.25

Koren, K. & Zieger, S. E. (2021). Optode Based Chemical Imaging-Possibilities, Challenges, and New Avenues in Multidimensional Optical Sensing. ACS Sensors, 6(5), 1671-1680. https://doi.org/10.1021/acssensors.1c00480

Musliner, K. L., Andersen, K. K., Agerbo, E., Albiñana, C., Vilhjalmsson, B. J., Rajagopal, V. M., Bybjerg-Grauholm, J., Bækved-Hansen, M., Pedersen, C. B., Pedersen, M. G., Munk-Olsen, T., Benros, M. E., Als, T. D., Grove, J., Werge, T., Børglum, A. D., Hougaard, D. M., Mors, O., Nordentoft, M. ... Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2023). Polygenic liability, stressful life events and risk for secondary-treated depression in early life: a nationwide register-based case-cohort study. Psychological Medicine, 53(1), 217-226. https://doi.org/10.1017/S0033291721001410

Albiñana, C., Grove, J., McGrath, J. J., Agerbo, E., Wray, N. R., Bulik, C. M., Nordentoft, M., Hougaard, D. M., Werge, T., Børglum, A. D., Mortensen, P. B., Privé, F. & Vilhjálmsson, B. J. (2021). Leveraging both individual-level genetic data and GWAS summary statistics increases polygenic prediction. American Journal of Human Genetics, 108(6), 1001-1011. https://doi.org/10.1016/j.ajhg.2021.04.014

Nielsen, M. M. & Pedersen, J. S. (2021). miRNA activity inferred from single cell mRNA expression. Scientific Reports, 11(1), Article 9170. https://doi.org/10.1038/s41598-021-88480-5

Munch, T. N., Hedley, P. L., Hagen, C. M., Bækvad-Hansen, M., Bybjerg-Grauholm, J., Grove, J., Nordentoft, M., Børglum, A. D., Mortensen, P. B., Werge, T. M., Melbye, M., Hougaard, D. M. & Christiansen, M. (2021). Co-occurring hydrocephalus in autism spectrum disorder: a Danish population-based cohort study. Journal of Neurodevelopmental Disorders, 13(1), 19. Article 19. https://doi.org/10.1186/s11689-021-09367-0

Bulik, C. M., Thornton, L. M., Parker, R., Kennedy, H., Baker, J. H., MacDermod, C., Guintivano, J., Cleland, L., Miller, A. L., Harper, L., Larsen, J. T., Yilmaz, Z., Grove, J., Sullivan, P. F., Petersen, L. V., Jordan, J., Kennedy, M. A. & Martin, N. G. (2021). The Eating Disorders Genetics Initiative (EDGI): study protocol. BMC Psychiatry, 21(1), Article 234. https://doi.org/10.1186/s12888-021-03212-3

Demontis, D., Walters, R. K., Rajagopal, V. M., Waldman, I. D., Grove, J., Als, T. D., Dalsgaard, S., Ribasés, M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Werge, T., Nordentoft, M., Mors, O., Mortensen, P. B., ADHD Working Group of the Psychiatric Genomics Consortium (PGC), Cormand, B., Hougaard, D. M., Neale, B. M., Franke, B. ... Børglum, A. D. (2021). Author Correction: Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder (Nature communications (2021) 12 1 (576)). Nature Communications, 12, Article 1166. https://doi.org/10.1038/s41467-021-21566-w

Christensen-Dalsgaard, J. (2021). Solar structure and evolution. Living Reviews in Solar Physics, 18(1), Article 2. https://doi.org/10.1007/s41116-020-00028-3

Scholz, V. V., Martin, B. C., Meyer, R., Schramm, A., Fraser, M. W., Nielsen, L. P., Kendrick, G. A., Risgaard-Petersen, N., Burdorf, L. D. W. & Marshall, I. P. G. (2021). Cable bacteria at oxygen-releasing roots of aquatic plants: a widespread and diverse plant-microbe association. New Phytologist, 232(5), 2138-2151. https://doi.org/10.1111/nph.17415

Spitoni, E., Calura, F., Silva Aguirre, V. & Gilli, R. (2021). The G-dwarf distribution in star-forming galaxies: A tug of war between infall and outflow. Astronomy and Astrophysics, 648, Article L5. https://doi.org/10.1051/0004-6361/202140836

Spitoni, E., Verma, K., Silva Aguirre, V., Vincenzo, F., Matteucci, F., Vaičekauskaitė, B., Palla, M., Grisoni, V. & Calura, F. (2021). APOGEE DR16: A multi-zone chemical evolution model for the Galactic disc based on MCMC methods. Astronomy and Astrophysics, 647, Article A73. https://doi.org/10.1051/0004-6361/202039864

Debnath, K., Kiilerich, A. H. & Mølmer, K. (2021). Ancilla-mediated qubit readout and heralded entanglement between rare-earth dopant ions in crystals. Physical Review A, 103(4), Article 043705. https://doi.org/10.1103/PhysRevA.103.043705

Larsen, J. J., Pedersen, S. S., Foged, N. & Auken, E. (2021). Suppression of very low frequency radio noise in transient electromagnetic data with semi-tapered gates. Geoscientific Instrumentation, Methods and Data Systems, 10(1), 81-90. Article 8. https://doi.org/10.5194/gi-10-81-2021

Dam, A.-S., Marshall, I. P. G., Risgaard-Petersen, N., Burdorf, L. D. W. & Marzocchi, U. (2021). Effect of salinity on cable bacteria species composition and diversity. Environmental Microbiology, 23(5), 2605-2616. https://doi.org/10.1111/1462-2920.15484

Ferreira, N., Gram, H., Sorrentino, Z. A., Gregersen, E., Schmidt, S. I., Reimer, L., Betzer, C., Perez-Gozalbo, C., Beltoja, M., Nagaraj, M., Wang, J., Nowak, J. S., Dong, M., Willén, K., Cholak, E., Bjerregaard-Andersen, K., Mendez, N., Rabadia, P., Shahnawaz, M. ... Jensen, P. H. (2021). Multiple system atrophy-associated oligodendroglial protein p25α stimulates formation of novel α-synuclein strain with enhanced neurodegenerative potential. Acta Neuropathologica, 142, 87-115. https://doi.org/10.1007/s00401-021-02316-0

Geary, C., Grossi, G., McRae, E. K. S., Rothemund, P. W. K. & Andersen, E. S. (2021). RNA origami design tools enable cotranscriptional folding of kilobase-sized nanoscaffolds. Nature Chemistry, 13(6), 549-558. https://doi.org/10.1038/s41557-021-00679-1

Denofrio, M. P., Villarruel, F. D., Erra-Balsells, R., Ogilby, P. R., Wolcan, E. & Cabrerizo, F. M. (2021). Spectroscopic and quantum chemical characterization of the ground and lowest electronically excited singlet and triplet states of halo- and nitro-harmines in aqueous media. Physical Chemistry Chemical Physics, 23(18), 11039-11051. https://doi.org/10.1039/d1cp00901j

Kumar, S., Duflot, D., Hoffmann, S. V., Jones, N. C., Bolognesi, P., Carlini, L., Richter, R., Avaldi, L., Brunger, M. J. & Limao-Vieira, P. (2021). A combined experimental and theoretical study of the lowest-lying valence, Rydberg and ionic electronic states of 2,4,6-trichloroanisole. Journal of Quantitative Spectroscopy & Radiative Transfer, 271, Article 107751. https://doi.org/10.1016/j.jqsrt.2021.107751

Kong, J., Liu, J., Marlton, F. P., Jørgensen, M. R. V. & Pramanick, A. (2021). Local structural mechanism for phase transition and ferroelectric polarization in the mixed oxide K_0.5Na_0.5NbO₃. Physical Review B, 103(18), Article 184104. https://doi.org/10.1103/PhysRevB.103.184104

Sandahl, A. F., Nguyen, T. J. D., Hansen, R. A., Johansen, M. B., Skrydstrup, T. & Gothelf, K. V. (2021). On-demand synthesis of phosphoramidites. Nature Communications, 12, Article 2760. https://doi.org/10.1038/s41467-021-22945-z

Prevéy, J., Elmendorf, S., Bjorkman, A., Alatalo, J., Ashton, I., Assmann, J., Björk, R. G., Björkman, M. P., Cannone, N., Carbognani, M., Chisholm, C., Clark, K., Collins, C., Cooper, E. J., Elberling, B., Frei, E., Henry, G. H. R., Hollister, R. D., Høye, T. ... Yang, Y. (2022). The tundra phenology database: More than two decades of tundra phenology responses to climate change. Arctic Science, 8(3), 1026–1039. https://doi.org/10.1139/AS-2020-0041

Szewczyk, M., Nowak, C., Hulva, P., Mergeay, J., Stronen, A. V., Bolfíková, B. Č., Czarnomska, S. D., Diserens, T. A., Fenchuk, V., Figura, M., de Groot, A., Haidt, A., Hansen, M. M., Jansman, H., Kluth, G., Kwiatkowska, I., Lubińska, K., Michaux, J. R., Niedźwiecka, N. ... Mysłajek, R. W. (2021). Genetic support for the current discrete conservation unit of the Central European wolf population. Wildlife Biology, 2021(2), Article wlb.00809. https://doi.org/10.2981/wlb.00809

Naikoo, M. I., Khan, F. A., Noureldeen, A., Rinklebe, J., Sonne, C., Rajakaruna, N. & Ahmad, P. (2021). Biotransfer, bioaccumulation and detoxification of nickel along the soil - faba bean - aphid - ladybird food chain. Science of the Total Environment, 785, Article 147226. https://doi.org/10.1016/j.scitotenv.2021.147226

Kolbinger, B., Amsler, C., Cuendis, S. A., Breuker, H., Capon, A., Costantini, G., Dupre, P., Fleck, M., Gligorova, A., Higaki, H., Kanai, Y., Kletzl, V., Kuroda, N., Lanz, A., Leali, M., Mackel, V., Malbrunot, C., Mascagna, V., Massiczek, O. ... Zmeskal, J. (2021). Measurement of the principal quantum number distribution in a beam of antihydrogen atoms. European Physical Journal D, 75(3), Article 91. https://doi.org/10.1140/epjd/s10053-021-00101-y

Gómez, A. L. R., Ulrich, T. & Rubinstein, N. A. (2021). The magmatic–hydrothermal evolution of the San Pedro porphyry Cu-(Mo) deposit: Implications for the metallogenesis of the Permian magmatism in the western margin of Gondwana. Resource Geology, 71(2), 93-104. https://doi.org/10.1111/rge.12251

Wathes, D. C., Cheng, Z., Salavati, M., Buggiotti, L., Takeda, H., Tang, L., Becker, F., Ingvartsen, K. L., Ferris, C. P., Hostens, M., Crowe, M. A. & GplusE Consortium (2021). Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation. Journal of Dairy Science, 104(3), 3596-3616. https://doi.org/10.3168/jds.2020-19165

Wathes, D. C., Cheng, Z., Salavati, M., Buggiotti, L., Takeda, H., Tang, L., Becker, F., Ferris, C. P., Hostens, M., Crowe, M. A. & GplusE Consortium (2021). Corrigendum to "Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation" (J. Dairy Sci. 104: 3596-3616). Journal of Dairy Science, 104(5), 6327. https://doi.org/10.3168/jds.2021-104-5-6327

Avdic, M., Marquardt, N., Rogers, Y. & Vermeulen, J. (2021). Machine Body Language: Expressing a Smart Speaker's Activity with Intelligible Physical Motion. In W. Ju, L. Oehlberg, S. Follmer, S. Fox & S. Kuznetsov (Eds.), DIS 2021 - Proceedings of the 2021 ACM Designing Interactive Systems Conference: Nowhere and Everywhere (pp. 1403-1418). Association for Computing Machinery. https://doi.org/10.1145/3461778.3462031

Meyer, R. L., Skovdal, S. M., Marshall, I. P. G., Schreiber, L., Nørskov-Lauritsen, N. & Jørgensen, N. P. (2021). Genome sequence of staphylococcus epidermidis AUH4567, a clinical isolate from an infected central venous catheter. Microbiology Resource Announcements, 10(12), Article e01254-20. https://doi.org/10.1128/MRA.01254-20

Wang, X., Svenning, J. C., Liu, J., Zhao, Z., Zhang, Z., Feng, G., Si, X. & Zhang, J. (2021). Regional effects of plant diversity and biotic homogenization in urban greenspace – The case of university campuses across China. Urban Forestry and Urban Greening, 62, Article 127170. https://doi.org/10.1016/j.ufug.2021.127170

Wagner, V., Večeřa, M., Jiménez-Alfaro, B., Pergl, J., Lenoir, J., Svenning, J. C., Pyšek, P., Agrillo, E., Biurrun, I., Campos, J. A., Ewald, J., Fernández-González, F., Jandt, U., Rašomavičius, V., Šilc, U., Škvorc, Ž., Vassilev, K., Wohlgemuth, T. & Chytrý, M. (2021). Alien plant invasion hotspots and invasion debt in European woodlands. Journal of Vegetation Science, 32(2), Article e13014. https://doi.org/10.1111/jvs.13014

Ellis, E. C., Gauthier, N., Goldewijk, K. K., Bird, R. B., Boivin, N., Díaz, S., Fuller, D. Q., Gill, J. L., Kaplan, J. O., Kingston, N., Locke, H., McMichael, C. N. H., Ranco, D., Rick, T. C., Rebecca Shaw, M., Stephens, L., Svenning, J. C. & Watson, J. E. M. (2021). People have shaped most of terrestrial nature for at least 12,000 years. Proceedings of the National Academy of Sciences (PNAS), 118(17), Article e2023483118. https://doi.org/10.1073/pnas.2023483118