Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Juul, K. O. R., Støckler, K. A. H. & Iversen, B. B. (2025). Benchmarking 3D-ΔPDF analysis using in-house X-ray sources. Acta Crystallographica Section A: Foundations and Advances, 81(Pt 4), 254-268. https://doi.org/10.1107/S2053273325003389

Jensen, R. W. M. & Skibsted, J. (2025). Aqueous Carbonation of Calcium Silicates With Different Ca/Si Ratios Studied by Solid-State NMR Spectroscopy. Magnetic Resonance in Chemistry, 63(7), 476-494. https://doi.org/10.1002/mrc.5528

Shao, J., Wang, M., Huang, J., Wang, Y., Zhao, J., Wang, R., Xu, Z. P., Jiang, J. & Zhang, L. (2025). Biomimetic Nanomedicines Deliver Naringin for Enhanced Acute Liver Failure Therapy via Balanced Regulation of Hepatocyte Oxidative Stress and Kupffer Cell Inflammation. Advanced Functional Materials, n/a(n/a), 2502801. Advance online publication. https://doi.org/10.1002/adfm.202502801

de Haro Reyes, B., Palmé, A., Fitzgerald, H., Göransson, M., Lyytikäinen, V., Madsen, B., Normand, S., Thorbjörnsson, H., Treier, U. A. & Hagenblad, J. (2025). An east–west distribution of genetic diversity in Nordic populations of caraway (Carum carvi L.) and its consequences for conservation prioritisation. Conservation Genetics, Article e0244666. Advance online publication. https://doi.org/10.1007/s10592-025-01702-5

Sølvsten, S. & van de Pol, J. (2025). Symbolic Model Checking in External Memory. ArXiv. https://doi.org/10.48550/arXiv.2505.11229

Raina, P., Mungi, N. A., Kumar, U., Rathi, A. D., Khan, N. H., Patel, D. A., Bhasin, A., Bisht, S., Hiby, L., Pandav, B., Sultan, M. S., Takpa, J. J. & Jhala, Y. V. (2025). Comprehensive assessment of snow leopard distribution and population in the Indian Trans-Himalaya, Ladakh: Standardizing methods for evidence-based conservation. PLOS ONE, 20(5), Article e0322136. https://doi.org/10.1371/journal.pone.0322136

Jalaluddin, F. M., Ahmerkamp, S., Marchant, H. K., Meyer, V., Koren, K. & Kuypers, M. M. M. (2025). Microenvironments on individual sand grains enhance nitrogen loss in coastal sediments. Scientific Reports, 15(1), Article 16384. https://doi.org/10.1038/s41598-025-00755-3

Simpson, L., Cantrill, D. J., Byrne, M., Allnutt, T. R., King, G. J., Lum, M., Al Bkhetan, Z., Andrew, R. L., Baker, W. J., Barrett, M. D., Batley, J., Berry, O., Binks, R. M., Bragg, J., Broadhurst, L., Brown, G., Bruhl, J. J., Edwards, R. J., Ferguson, S. ... Crayn, D. M. (2025). The Genomics for Australian Plants (GAP) framework initiative - developing genomic resources for understanding the evolution and conservation of the Australian flora. Australian Systematic Botany, 38(3), Article SB24022. https://doi.org/10.1071/SB24022

Thomsen, R. M., Nie, S., Lothenbach, B., Jensen, L. R., Nielsen, A. H., Skibsted, J. & Yue, Y. (2025). A connection between structure and reactivity in alkali-modified calcium aluminosilicate glasses for sustainable cements. Journal of Non-Crystalline Solids, 665, Article 123606. https://doi.org/10.1016/j.jnoncrysol.2025.123606

Christiansen, M. P. V. & Hammer, B. (2025). Δ-model correction of foundation model based on the model’s own understanding. Journal of Chemical Physics, 162(18), Article 184701. https://doi.org/10.1063/5.0268264

Mifsud, D. V., Kaňuchová, Z., Auriacombe, O., Herczku, P., Qasim, D., Kovács, S. T. S., Rácz, R., Sulik, B., Juhász, Z., Rajta, I., Vajda, I., Biri, S., McCullough, R. W., Ioppolo, S., Raut, U. & Mason, N. J. (2025). Cosmic Ray Irradiation of Interstellar Ices on Sulfur-Rich Grains: A Possible Source of Sulfur-Bearing Molecules. ACS Earth and Space Chemistry, 9(5), 1227-1242. https://doi.org/10.1021/acsearthspacechem.5c00036

Hirsch, C. & Petráková, M. (2025). Large-Deviation Analysis for Canonical Gibbs Measures. Journal of Statistical Physics, 192(5), Article 71. https://doi.org/10.1007/s10955-025-03451-8

Evans, D. C. S., Kristensen, M. F., Minero, G. A. S., Palmén, L. G., Knap, I., Tiwari, M. K., Schlafer, S. & Meyer, R. L. (2025). Dental biofilms contain DNase I-resistant Z-DNA and G-quadruplexes but alternative DNase overcomes this resistance. npj Biofilms and Microbiomes, 11(1), Article 80. https://doi.org/10.1038/s41522-025-00694-x

Spaeth, D., Reffert, S., Trifonov, T., Kaminski, A., Albrecht, S., Grundahl, F., Andersen, M. F., Quirrenbach, A. & Pallé, P. L. (2025). Precise radial velocities of giant stars XVII: Distinguishing planets from intrinsically induced radial velocity signals in evolved stars. Astronomy and Astrophysics, 697, Article A32. https://doi.org/10.1051/0004-6361/202453500

Yang, Y., Liu, X., Wu, J., Svenning, J. C., Liu, J. & Shrestha, N. (2025). A comprehensive county-level distribution database of alien and invasive plants in China. Ecology, 106(5), Article e70084. https://doi.org/10.1002/ecy.70084

Sveegaard, S., Nabe-Nielsen, J., Cordier, A. J. R., van Beest, F., Galatius, A., Tougaard, J., Griffiths, E. T., Marcolin, C., Zeleznik, J., Ladegaard, M. & Kyhn, L. A. (2024). Marine Mammal surveys – pre-investigations for offshore wind farms in the area North Sea I. National Environmental Research Institute, Aarhus University. https://dce.au.dk/fileadmin/dce.au.dk/Udgivelser/Eksterne_udgivelser/2024/Marine_Mammal_surveys.pdf

Stepanenko, S., Nardino, E., Frumin, D., Timany, A. & Birkedal, L. (2025). Context-Dependent Effects in Guarded Interaction Trees. In V. Vafeiadis (Ed.), Programming Languages and Systems - 34th European Symposium on Programming, ESOP 2025, Held as Part of the International Joint Conferences on Theory and Practice of Software, ETAPS 2025, Proceedings (Vol. Part II, pp. 286-313). Springer. https://doi.org/10.1007/978-3-031-91121-7_12

Gratzer, D., Møller, M. A. & Birkedal, L. (2025). Idempotent Resources in Separation Logic: The Heart of core in Iris. In P. A. Abdulla & D. Kesner (Eds.), Foundations of Software Science and Computation Structures - 28th International Conference, FoSSaCS 2025, Held as Part of the International Joint Conferences on Theory and Practice of Software: ETAPS 2025, Proceedings (pp. 45-66). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-031-90897-2_3

Januzelli, J., Roy, L. & Xu, J. (2025). Under What Conditions Is Encrypted Key Exchange Actually Secure? In S. Fehr & P.-A. Fouque (Eds.), Advances in Cryptology – EUROCRYPT 2025 - 44th Annual International Conference on the Theory and Applications of Cryptographic Techniques: Proceedings (pp. 451-481). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-031-91124-8_16

Che, H. C., Zhang, X. Y., Wang, Y. Q., Zhang, L., Shen, X. J., Zhang, Y. W., Ma, Q. L., Sun, J. Y., Zhang, Y. W. & Wang, T. T. (2016). Characterization and parameterization of aerosol cloud condensation nuclei activation under different pollution conditions. Scientific Reports, 6, Article 24497. https://doi.org/10.1038/srep24497

Andreasen, M. D., Souza, P. C. T., Schiøtt, B. & Zuzic, L. (2025). Creating Coarse-Grained Systems with COBY: Toward Higher Accuracy of Complex Biological Systems. Journal of Chemical Information and Modeling, 65(10), 4760-4766. https://doi.org/10.1021/acs.jcim.5c00069

Poulsen, E. T., Nielsen, N. S. & Enghild, J. J. (2025). The role of the extracellular matrix in TGFBI-related corneal dystrophy development. In E. K. Kim & R. D. Stulting (Eds.), TGFBI-related Corneal Dystrophies: Clinical Findings, Cell Biology, and Genetics (pp. 77-94). Springer. https://doi.org/10.1007/978-981-96-0131-8_9

Quatela, A.-S., Cangren, P., De Lima Ferreira, P., Woudstra, Y., Zsoldos-Skahjem, A., Bacon, C. D., de Boer, H. J. & Oxelman, B. (2025). Phylogenetic relationships and the identification of allopolyploidy in circumpolar Silene sect. Physolychnis. American Journal of Botany, 112(6), Article e70051. https://doi.org/10.1002/ajb2.70051

Zheng, X., Sanei, H., Jiang, F., Luo, Q., Wang, Y., Nedzweckas, J. L., Valentine, B. J., Stokes, M. R., Cao, L. & Hackley, P. C. (2025). Relating systematic molecular and textural properties of graptolite pyrolyzed via gold tube hydrous pyrolysis: Implications for thermal proxies in lower Paleozoic marine shales. International Journal of Coal Geology, 306, Article 104793. https://doi.org/10.1016/j.coal.2025.104793

Lunding, R. S., Feuchtner, T. & Grønbaek, K. (2025). Investigating AR Assistance for Human-Robot Collaboration in Mould Assembly 'in the Wild'. In HRI 2025 - Proceedings of the 2025 ACM/IEEE International Conference on Human-Robot Interaction (pp. 540-549). IEEE. https://doi.org/10.1109/HRI61500.2025.10973920

Wang, Q., Li, Y., Sanei, H., Rudra, A., Yuan, M., Wang, Y., Huang, Y. & Worden, R. H. (2025). Restoration of buried organic carbon for catagenesis-affected rocks using Rock-Eval thermal analysis: Assumptions, performance, and uncertainty analysis. Earth-Science Reviews, 267, Article 105155. https://doi.org/10.1016/j.earscirev.2025.105155

Mosbech, A., Fritt-Rasmussen, J., Johansen, K. L., Copley, M., Chunyk, L., Petrevic, F., Marty, G., Blockley, D., Nieminen, S., Haugland Strand, S. A., Kjønigsen, K. & Thurston, D. (2025). Arctic Mining: Environmental issues, mitigation and pollution control for marine and coastal mining. Arctic Council. https://hdl.handle.net/11374/3355

Zhou, Q., Chacon, A., Pan, J. & Johal, W. (2025). Assisting MoCap-Based Teleoperation of Robot Arm Using Augmented Reality Visualisations. In HRI 2025 - Proceedings of the 2025 ACM/IEEE International Conference on Human-Robot Interaction (pp. 1765-1769). IEEE Computer Society. https://doi.org/10.1109/HRI61500.2025.10974111

Mashhadi, S. R., Keating, K., Müller-Petke, M., Hiller, T., Costabel, S., Parra, A. O. & Grombacher, D. (2025). Longitudinal to transverse relaxation time ratio (T₁/T₂) in unconsolidated geological materials: a perspective from 2-D borehole and laboratory NMR measurements. Geophysical Journal International, 242(1), Article ggaf154. https://doi.org/10.1093/gji/ggaf154

Hoeflich, P., Fereidouni, E., Fisher, A., Mera, T., Ashall, C., Brown, P., Baron, E., DerKacy, J., Diamond, T., Shabandeh, M. & Stritzinger, M. (2025). Numerical and Physical Challenges to Nebular Spectroscopy in Thermonuclear Supernovae. Journal of Physics: Conference Series, 2997(1), Article 012017. https://doi.org/10.1088/1742-6596/2997/1/012017

Kaewsangsai, S., Panyadee, P., Panya, A., Pandith, H., Wangpakapattanawong, P., Balslev, H. & Inta, A. (2025). Ethnobotany, Cytotoxicity and Color Stability of Karen Natural Colorants. Plants, 14(9), Article 1348. https://doi.org/10.3390/plants14091348

Faghtmann, J., Østergaard, A. R., Fritz, F., Andresen, S. S. P. & Jørgensen, K. A. (2025). Enantioselective and Divergent Trienamine-Mediated Reactions of Halogenated Maleimides. Organic Letters, 27(20), 5236-5240. https://doi.org/10.1021/acs.orglett.5c01444

Taylor, K., Wang, H., Weidner, F. & Gellersen, H. (2025). Towards the Fusion of Gaze and Micro-Gestures. In Proceedings - 2025 IEEE Conference on Virtual Reality and 3D User Interfaces Abstracts and Workshops, VRW 2025 (pp. 1474-1475). IEEE. https://doi.org/10.1109/VRW66409.2025.00383

Li, Y., Huber, D., Ong, J. M. J., van Saders, J., Costa, R. R., Larsen, J. R., Basu, S., Bedding, T. R., Dai, F., Chontos, A., Carmichael, T. W., Hey, D., Kjeldsen, H., Hon, M., Campante, T. L., Monteiro, M. J. P. F. G., Lundkvist, M. S., Saunders, N., Isaacson, H. ... Walawender, J. (2025). K Dwarf Radius Inflation and a 10 Gyr Spin-down Clock Unveiled through Asteroseismology of HD 219134 from the Keck Planet Finder. Astrophysical Journal, 984(2), Article 125. https://doi.org/10.3847/1538-4357/adc737

Chergui, L., Brauneis, F., Cardinale, T. A., Schubert, M., Volosniev, A. G. & Reimann, S. M. (2025). Transition from spontaneous to explicit symmetry breaking in a finite-sized system: Bosonic bound states of an impurity. Physical Review A, 111(5), Article 053307. https://doi.org/10.1103/PhysRevA.111.053307

Crossfield, G. & Finster, K. (2025). The effects of time-since-activation through saltation and dose on the toxicity of Mars-analogous abraded basalt and the bacterial transcriptomic response. Discover Life, 55(1), Article 16. https://doi.org/10.1007/s11084-025-09694-5

Rossi, C., Rasmussen, A. P., Gans, B., Jašík, J., Žabka, J., Albaret, M., Bauduin, H., Charrière, C., Dugal, J. P., Guigand, J., Le Bris, C. & Jacovella, U. (2025). iSELECTION: An Instrument to Study the Kinetics of Isomer-Selected Gas-Phase Ion-Molecule Reactions. Chemistry-Methods. Advance online publication. https://doi.org/10.1002/cmtd.202500013

Egendal, I., Brøndum, R. F., Pelizzola, M., Hobolth, A. & Bøgsted, M. (2025). On the Relation Between Linear Autoencoders and Non-Negative Matrix Factorization for Mutational Signature Extraction. Journal of computational biology : a journal of computational molecular cell biology, 32(5), 461-472. https://doi.org/10.1089/cmb.2024.0784

Olaizola, B., Illana, A., Benito, J., Suárez-Bustamante, D. P., Del Piccolo, G., Algora, A., Andel, B., Andreyev, A. N., Araszkiewicz, M., Ayyad, Y., Bark, R. A., Berry, T., Borge, M. J. G., Chrysalidis, K., Cocolios, T. E., Costache, C., Cubiss, J. G., Van Duppen, P., Favier, Z. ... The IDS Collaboration (2025). The ⁷⁶Cu conundrum remains unsolved. Physics Letters B, 866, Article 139551. https://doi.org/10.1016/j.physletb.2025.139551

Andersen, L. H., Rasmussen, A. P., Pedersen, H. B. & Klinkby, N. (2025). Time-Resolved Cryogenic Action Spectroscopy of Dipole-Bound States in Phenoxide. Physical Review Letters, 134(19), Article 193002. https://doi.org/10.1103/PhysRevLett.134.193002

Haase, K., Pallesen, T. M., Sindbæk, S. M. & Kristiansen, S. M. (2025). Predicting Buried Archaeological Heritage in a 3D Environment—Modelling the Urban Subsurface Using Voxels. Geoarchaeology, 40(3), Article e70014. https://doi.org/10.1002/gea.70014

Abraham, A. J., Duvall, E. S., Doughty, C. E., Riond, B., Ortmann, S., Terranova, M., le Roux, E. & Clauss, M. (2025). Sodium Retention in Large Herbivores: Physiological Insights and Zoogeochemical Consequences. Journal of Experimental Zoology Part A: Ecological and Integrative Physiology, 343(6), 664-676. https://doi.org/10.1002/jez.2924