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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Alexoudi, X., Mallonn, M., von Essen, C., Turner, J. D., Keles, E., Southworth, J., Mancini, L., Ciceri, S., Granzer, T., Denker, C., Dineva, E. & Strassmeier, K. G. (2018). Deciphering the atmosphere of HAT-P-12b: solving discrepant results. Astronomy & Astrophysics (A&A), 620, Article 142. https://doi.org/10.1051/0004-6361/201833691
Alexoudi, X., Mallonn, M., Keles, E., Poppenhager, K., Von Essen, C. & Strassmeier, K. G. (2020). Role of the impact parameter in exoplanet transmission spectroscopy. Astronomy and Astrophysics, 640, Article A134. https://doi.org/10.1051/0004-6361/202038080
Alex Shorter, K., Murray, M. M., Johnson, M., Moore, M. & Howle, L. E. (2014). Drag of suction cup tags on swimming animals: Modeling and measurement. Marine Mammal Science, 30(2), 726-746. https://doi.org/10.1111/mms.12083
Al Farid, F., Hashim, N., Abdullah, J., Bhuiyan, M. R., Shahida Mohd Isa, W. N., Uddin, J., Haque, M. A. & Husen, M. N. (2022). A Structured and Methodological Review on Vision-Based Hand Gesture Recognition System. Journal of Imaging, 8(6), Article 153. https://doi.org/10.3390/jimaging8060153
Al Hyder, R., Colussi, V., Cufar, M., Brand, J., Recati, A. & Bruun, G. (2025). Lattice Bose polarons at strong coupling and quantum criticality. SciPost Physics, 19(1), Article 002. https://doi.org/10.21468/SciPostPhys.19.1.002
Ali, K., Hepburn, B., Tucker, C. & Tan, Z. (1998). Pattern Recognition Using Chaotic Neural Networks. Discrete Dynamics in Nature and Society, 2, 243-247.
Ali, S. A., Chung, K. H. K., Forgham, H., Olsen, W. P., Kakinen, A., Balaji, A., Otzen, D. E., Davis, T. P. & Javed, I. (2023). Alzheimer's Progenitor Amyloid-β Targets and Dissolves Microbial Amyloids and Impairs Biofilm Function. Advanced Science, 10(29), Article e2301423. https://doi.org/10.1002/advs.202301423
Aliakbari, F., Shabani, A. A., Bardania, H., Mohammad-Beigi, H., Tayaranian Marvian, A., Dehghani Esmatabad, F., Vafaei, A. A., Shojaosadati, S. A., Saboury, A. A., Christiansen, G., Otzen, D. E. & Morshedi, D. (2018). Formulation and anti-neurotoxic activity of baicalein-incorporating neutral nanoliposome. Colloids and surfaces. B, Biointerfaces, 161, 578-587. https://doi.org/10.1016/j.colsurfb.2017.11.023
Aliakbari, F., Shabani, A. A., Bardania, H., Seyedi, H. A. E., Mohammad-Beigie, H., Marvian, A. T., Nasouti, M., Vafaei, A. A., Shojaosadati, S. A., Saboury, A. A., Christiansen, G. & Morshedi, D. (2017). Neurotoxicity of pre-incubated alpha-synuclein with neutral nanoliposomes on PC12 and SHSY5Y cell lines. Scientia Iranica: international journal of science & technology, 24(6), 3542-3553. https://doi.org/10.24200/sci.2017.4419
Aliakbari, F., Mohammad-Beigi, H., Rezaei-Ghaleh, N., Becker, S., Dehghani Esmatabad, F., Eslampanah Seyedi, H. A., Bardania, H., Tayaranian Marvian, A., Collingwood, J. F., Christiansen, G., Zweckstetter, M., Otzen, D. E. & Morshedi, D. (2018). The potential of zwitterionic nanoliposomes against neurotoxic alpha-synuclein aggregates in Parkinson's Disease. Nanoscale, 10(19), 9174-9185. https://doi.org/10.1039/c8nr00632f
Aliakbari, F., Mohammad-Beigi, H., Abbasi, S., Rezaei-Ghaleh, N., Lermyte, F., Parsafar, S., Becker, S., Tafreshi, A. P., O'Connor, P. B., Collingwood, J. F., Christiansen, G., Sutherland, D. S., Jensen, P. H., Morshedi, D. & Otzen, D. E. (2021). Multiple Protective Roles of Nanoliposome-Incorporated Baicalein against Alpha-Synuclein Aggregates. Advanced Functional Materials, 31(7), Article 2007765. https://doi.org/10.1002/adfm.202007765
Aliakbari, F., Marzookian, K., Parsafar, S., Hourfar, H., Nayeri, Z., Fattahi, A., Raeiji, M., Boroujeni, N. N., Otzen, D. E. & Morshedi, D. (2024). The impact of hUC MSC-derived exosome-nanoliposome hybrids on α-synuclein fibrillation and neurotoxicity. Science Advances, 10(14), eadl3406. Article eadl3406. https://doi.org/10.1126/sciadv.adl3406
Alijanvand, S. H., Ladefoged, L. K., Zubrienė, A., Sakalauskas, A., Christiansen, G., Dudutiene, V., Schiøtt, B., Matulis, D., Smirnovas, V. & Otzen, D. E. (2023). Inhibitory effects of fluorinated benzenesulfonamides on insulin fibrillation. International Journal of Biological Macromolecules, 227, 590-600. https://doi.org/10.1016/j.ijbiomac.2022.12.105
Alimadadi, S., Zhong, D., Madsen, M. & Tip, F. (2018). Finding Broken Promises in Asynchronous JavaScript Programs. Proceedings of the ACM on Programming Languages , 2(OOPSLA), 162:1-162:26. Article 162. https://doi.org/10.1145/3276532
Alinezhad, A., Gloag, L., Benedetti, T. M., Cheong, S., Webster, R. F., Roelsgaard, M., Iversen, B. B., Schuhmann, W., Gooding, J. J. & Tilley, R. D. (2019). Direct Growth of Highly Strained Pt Islands on Branched Ni Nanoparticles for Improved Hydrogen Evolution Reaction Activity. Journal of the American Chemical Society, 141(41), 16202-16207. https://doi.org/10.1021/jacs.9b07659
Alipour, S., Rezakhani, A. T., Babu, A. P., Mølmer, K., Möttönen, M. & Ala-Nissila, T. (2020). Correlation-Picture Approach to Open-Quantum-System Dynamics. Physical Review X, 10(4), Article 041024. https://doi.org/10.1103/PhysRevX.10.041024
Aliverti, M., Oggioni, L., Genoni, M., Pariani, G., Hershko, O., Brucalassi, A., Pignata, G., Kuncarayakti, H., Sanchez, R. Z., Munari, M., Campana, S., Schipani, P., Claudi, R., Baruffolo, A., Ben-Ami, S., Biondi, F., Capasso, G., Cosentino, R., D'Alessio, F. ... Ventura, E. (2020). Manufacturing, integration, and mechanical verification of SOXS. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114476O SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2563883
Aliverti, M., Battaini, F., Radhakrishnan, K., Genoni, M., Pariani, G., Oggioni, L., Hershko, O., Colapietro, M., D'Orsi, S., Brucalassi, A., Pignata, G., Kuncarayakti, H., Campana, S., Claudi, R., Schipani, P., Achrén, J., Araiza Duran, J. A., Arcavi, I., Baruffolo, A. ... Young, D. (2022). SOXS mechanical integration and verification in Italy. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-based and Airborne Instrumentation for Astronomy IX Article 1218481 SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2629959
Alkhaldi, H. S., Kremer, F., Bierschenk, T., Hansen, J. L., Nylandsted-Larsen, A., Williams, J. S. & Ridgway, M. C. (2016). Porosity as a function of stoichiometry and implantation temperature in Ge/Si1-xGex alloys. Journal of Applied Physics, 119(9), Article 094303. https://doi.org/10.1063/1.4942995
Al-Khalili, A., Rosén, S., Danared, H., Derkatch, A. M., Källberg, A., Larsson, M., Le Padellec, A., Neau, A., Semaniak, J., Thomas, R., af Ugglas, M., Vikor, L., Zon, W., van der Zande, W. J., Urbain, X., Jensen, M. J., Bilodeau, R. C., Heber, O., Pedersen, H. B. ... Wolf, A. (2003). Absolute high-resolution rate coefficients for dissociative recombination of electrons with HD+: Comparison of results from three heavy-ion storage rings. Physical Review A, 68, 42702.
al Khasawneh, S., Abu-Jaber, N., Hamarneh, C. & Murray, A. (2022). Age determination of runoff terrace systems in Petra, Jordan, using rock surface luminescence dating. Archaeological and Anthropological Sciences, 14(3), Article 48. https://doi.org/10.1007/s12520-022-01510-9
al Khasawneh, S., Alqudah, M., Murray, A. & Kafafi, Z. (2024). Investigating the Neolithic rubble layers of ‘Ain Ghazal, Jordan, using luminescence dating. Archaeological and Anthropological Sciences, 16, Article 41. https://doi.org/10.1007/s12520-024-01947-0
Allaart, L., Schomacker, A., Larsen, N. K., Nørmark, E., Rydningen, T. A., Farnsworth, W. R., Retelle, M., Brynjólfsson, S., Forwick, M. & Kjellman, S. E. (2021). Glacial history of the Åsgardfonna Ice Cap, NE Spitsbergen, since the last glaciation. Quaternary Science Reviews, 251, Article 106717. https://doi.org/10.1016/j.quascirev.2020.106717
Allan, C., Avgustinov, P., Christensen, A. S., Hendren, L., Kuzins, S., Lhot´ak, O., de Moor, O., Sereni, D., Sittampalam, G. & Tibble, J. (2005). Adding Trace Matching with Free Variables to AspectJ. In Proc. 20th International Conference on Object-Oriented Programming Systems, Languages and Applications, OOPSLA 2005 (pp. 345-364)
Allan, C., Avgustinov, P., Christensen, A. S., Hendren, L. J., Kuzins, S., Lhoták, J., Lhoták, O., de Moor, O., Sereni, D., Sittampalam, G. & Tibble, J. (2005). abc: The AspectBench Compiler for AspectJ. In R. Glück & M. R. Lowry (Eds.), Generative Programming and Component Engineering, 4th International Conference, GPCE 2005 Proceedings (Tallinn, Estonia, September 29 - October 1, 2005) (pp. 10-16)
Allan, C., Avgustinov, P., Christensen, A. S., Dufour, B., Goard, C., Hendren, L. J., Kuzins, S., Lhoták, J., Lhoták, O., de Moor, O., Sereni, D., Sittampalam, G., Tibble, J. & Verbrugge, C. (2005). abc the aspectBench compiler for aspectJ a workbench for aspect-oriented programming language and compilers research. In R. Johnson & R. P. Gabriel (Eds.), Companion to the 20th Annual ACM SIGPLAN Conference on Object-Oriented Programming, Systems, Languages, and Applications, OOPSLA 2005 (San Diego, CA, USA, October 16-20, 2005) (pp. 88-89). Association for Computing Machinery.
Allan, E., de Vernal, A., Krawczyk, D., Moros, M., Radi, T., Rochon, A., Seidenkrantz, M. S. & Zaragosi, S. (2020). Distribution of dinocyst assemblages in surface sediment samples from the West Greenland margin. Marine Micropaleontology, 159, Article 101818. https://doi.org/10.1016/j.marmicro.2019.101818

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Vergeynst, L., Christensen, J. H., Boone, W., Dalsgaard, T., Kjeldsen, K. U., Malmquist, L., Meire, L. & Rysgaard, S. (2017). In situ investigation of hydrocarbon degradation in Arctic seawater and sea ice. Abstract from Arctic Change 2017 - ArcticNet Annual Scientific Meetings, Quebec, Canada.
Verdú, M., Garrido, J. L., Alcántara, J. M., Montesinos-Navarro, A., Aguilar, S., Aizen, M. A., Al-Namazi, A. A., Alifriqui, M., Allen, D., Anderson-Teixeira, K. J., Armas, C., Bastida, J. M., Bellido, T., Bonanomi, G., Paterno, G. B., Briceño, H., de Oliveira, R. A. C., Campoy, J. G., Chaieb, G. ... Zamora, R. (2023). RecruitNet: A global database of plant recruitment networks. Ecology, 104(2), Article e3923. https://doi.org/10.1002/ecy.3923
Verde, C., Giordano, D., Russo, R., Altomonte, G., Viappiani, C., Di Prisco, G., Bruno, S. & Fago, A. (2015). The hemoglobins of the Greenland shark Somniosus microcephalus. Abstract from SEB Annual Main Meeting, Prague, Czech Republic.
Verberk, W. C. E. P., Overgaard, J., Andersen, R. E., Bayley, M., Wang, T., Boardman, L. & Terblanche, J. S. (2016). Does oxygen limit thermal tolerance in arthropods? A critical review of current evidence. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 192, 64-78. https://doi.org/10.1016/j.cbpa.2015.10.020
Vera-Puerto, I., Valdes, H., Correa, C., Perez, V., Gomez, R., Alarcon, E. & Arias, C. A. (2021). Evaluation of Bed Depth Reduction, Media Change, and Partial Saturation as Combined Strategies to Modify in Vertical Treatment Wetlands. International Journal of Environmental Research and Public Health, 18(9), Article 4842. https://doi.org/10.3390/ijerph18094842
Vera-Puerto, I., Escobar, J., Rebolledo, F., Valenzuela, V., Olave, J., Tíjaro-Rojas, R., Correa, C. & Arias, C. (2021). Performance comparison of vertical flow treatment wetlands planted with the ornamental plant zantedeschia aethiopica operated under arid and mediterranean climate conditions. Water (Switzerland), 13(11), Article 1478. https://doi.org/10.3390/w13111478
Vera-Puerto, I., Valdés, H., Bueno, M., Correa, C., Olave, J., Carrasco-Benavides, M., Schiappacasse, F. & Arias, C. A. (2022). Reclamation of Treated Wastewater for Irrigation in Chile: Perspectives of the Current State and Challenges. Water, 14(4), Article 627. https://doi.org/10.3390/w14040627
Vera-Puerto, I., Campal, J., Martínez, S., Cortés-Rico, L., Coy, H., Tan, S., Arias, C. A., Baquero-Rodríguez, G. & Rosso, D. (2022). Effects of Environmental Conditions and Bed Configuration on Oxygen Transfer Efficiency in Aerated Constructed Wetlands. Water (Switzerland), 14(20), Article 3284. https://doi.org/10.3390/w14203284
Vera-Puerto, I. L., Sarkar, S., Moris, G., Valdés, H., Quiroz, M., López, J., Encina, F., Molle, P. & Arias, C. A. (2024). First report of components responsible for odor sensation from a vertical flow constructed wetland treating combined sewer overflow. Environmental Science: Water Research and Technology, 10(9), 2013-2019. https://doi.org/10.1039/d4ew00303a
Vera-Puerto, I., Marca, N., Contreras, C., Zuñiga, F., López, J., Sangüesa, C., Correa, C., Arias, C. A. & Valenzuela, M. (2024). Performance of vertical and horizontal treatment wetlands planted with ornamental plants in Central Chile: comparative analysis of initial operation stage for effluent reuse in agriculture. Environmental Science and Pollution Research, 31(38), 50398-50410. https://doi.org/10.1007/s11356-024-34575-1
Vera-Puerto, I., Valdés, H., Laurens-Arredondo, L., López-Cortés, X., Quiroz, M., Hernández-Crespo, C., Belmonte, M., Campos, J. L., Martín-Monerris, M., Miglio, R., Molle, P. & Arias, C. A. (2024). Educating Professionals to Develop Nature-Based Solutions (NBS) as Infrastructure for Water Pollution Control: A Course Proposal. Sustainability, 16(16), Article 7199. https://doi.org/10.3390/su16167199
Vera-Puerto, I., Moris, G., Valdés, H., Quiroz, M., Encina, F., Molle, P., Martín-Monerris, M., Hernández-Crespo, C. & Arias, C. A. (2025). Implementation of an experimental vertical flow treatment wetland for combined sewer overflow in the south of Chile. Journal of Water Process Engineering, 72, Article 107484. https://doi.org/10.1016/j.jwpe.2025.107484
Vera-Puerto, I., Istenič, D., Molle, P., Hernández-Crespo, C. & Arias, C. A. (2025). Constructed wetlands for combined sewer overflow treatment: A 30-year review, current trends and future projections. Current Opinion in Environmental Science and Health, 48, Article 100681. https://doi.org/10.1016/j.coesh.2025.100681
Vera, I. L., Valdes, H., Correa, C., Agredano, R., Vidal, G., Belmonte, M., Olave, J. L. & Arias, C. A. (2020). Proposal of competencies for engineering education to develop water infrastructure based on “Nature-Based Solutions” in the urban context. Journal of Cleaner Production, 265, Article 121717. https://doi.org/10.1016/j.jclepro.2020.121717
Venkataraman, V. V., Kerby, J. T., Nguyen, N., Ashenafi, Z. T. & Fashing, P. J. (2015). Solitary Ethiopian wolves increase predation success on rodents when among grazing gelada monkey herds. Journal of Mammalogy, 96(1), 129-137. https://doi.org/10.1093/jmammal/gyu013
Venkataraman, V. V., Miller, C., Foxfoot, I., Lin, B., Petrie, Z. L., Simberloff, R. A., Bernardo, O., Redon, N., Hohn, T. I., Kerby, J. T., Nguyen, N. & Fashing, P. J. (2022). Epizoochorous seed dispersal by an Afroalpine savanna primate. Biotropica, 54(2), 358-369. https://doi.org/10.1111/btp.13057
Velazco, S. J. E., Svenning, J. C., Ribeiro, B. R. & Laureto, L. M. O. (2021). On opportunities and threats to conserve the phylogenetic diversity of Neotropical palms. Diversity and Distributions, 27(3), 512-523. https://doi.org/10.1111/ddi.13215
Vega, I. S., Peterson, P. M., Soreng, R. J. & Lægaard, S. (2007). Aphanelytrum peruvianum (Poaceae: Poinae): A new species from Peru. J. Bot. Res. Inst. Texas, 1(2), 841-845.
Večeřa, M., Divíšek, J., Lenoir, J., Jiménez-Alfaro, B., Biurrun, I., Knollová, I., Agrillo, E., Campos, J. A., Čarni, A., Crespo Jiménez, G., Ćuk, M., Dimopoulos, P., Ewald, J., Fernández-González, F., Gégout, J. C., Indreica, A., Jandt, U., Jansen, F., Kącki, Z. ... Chytrý, M. (2019). Alpha diversity of vascular plants in European forests. Journal of Biogeography, 46(9), 1919-1935. https://doi.org/10.1111/jbi.13624
Vázquez-Padín, J., Mosquera-Corral, A., Campos, J. L., Méndez, R. & Revsbech, N. P. (2010). Microbial community distribution and activity dynamics of granular biomass in a CANON reactor. Water Research, 44, 4359-4370. https://doi.org/10.1016/j.watres.2010.05.041
Vasquez-Cardenas, D., van de Vossenberg, J., Polerecky, L., Malkin, S. Y., Schauer, R., Hidalgo-Martinez, S., Confurius, V., Middelburg, J. J., Meysman, F. JR. & Boschker, H. TS. (2015). Microbial carbon metabolism associated with electrogenic sulphur oxidation in coastal sediments. I S M E Journal, 9(9), 1966-78. https://doi.org/10.1038/ismej.2015.10
Vasquez, D. L. A., Balslev, H. & Sklenar, P. (2015). Human impact on tropical-alpine plant diversity in the northern Andes. Biodiversity and Conservation, 24(11), 2673-2683. https://doi.org/10.1007/s10531-015-0954-0
Vargas, P., Nogales, M., Jaramillo, P., Olesen, J. M., Traveset, A. & Heleno, R. (2014). Plant colonization across the Galápagos Islands: success of the sea dispersal syndrome. Botanical Journal of the Linnean Society, 174(3), 349-358. https://doi.org/10.1111/boj.12142