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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Aliverti, M., Oggioni, L., Genoni, M., Pariani, G., Hershko, O., Brucalassi, A., Pignata, G., Kuncarayakti, H., Sanchez, R. Z., Munari, M., Campana, S., Schipani, P., Claudi, R., Baruffolo, A., Ben-Ami, S., Biondi, F., Capasso, G., Cosentino, R., D'Alessio, F. ... Ventura, E. (2020). Manufacturing, integration, and mechanical verification of SOXS. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-Based and Airborne Instrumentation for Astronomy VIII Article 114476O SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2563883
Aliverti, M., Battaini, F., Radhakrishnan, K., Genoni, M., Pariani, G., Oggioni, L., Hershko, O., Colapietro, M., D'Orsi, S., Brucalassi, A., Pignata, G., Kuncarayakti, H., Campana, S., Claudi, R., Schipani, P., Achrén, J., Araiza Duran, J. A., Arcavi, I., Baruffolo, A. ... Young, D. (2022). SOXS mechanical integration and verification in Italy. In C. J. Evans, J. J. Bryant & K. Motohara (Eds.), Ground-based and Airborne Instrumentation for Astronomy IX Article 1218481 SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.2629959
Alkhaldi, H. S., Kremer, F., Bierschenk, T., Hansen, J. L., Nylandsted-Larsen, A., Williams, J. S. & Ridgway, M. C. (2016). Porosity as a function of stoichiometry and implantation temperature in Ge/Si1-xGex alloys. Journal of Applied Physics, 119(9), Article 094303. https://doi.org/10.1063/1.4942995
Al-Khalili, A., Rosén, S., Danared, H., Derkatch, A. M., Källberg, A., Larsson, M., Le Padellec, A., Neau, A., Semaniak, J., Thomas, R., af Ugglas, M., Vikor, L., Zon, W., van der Zande, W. J., Urbain, X., Jensen, M. J., Bilodeau, R. C., Heber, O., Pedersen, H. B. ... Wolf, A. (2003). Absolute high-resolution rate coefficients for dissociative recombination of electrons with HD+: Comparison of results from three heavy-ion storage rings. Physical Review A, 68, 42702.
al Khasawneh, S., Abu-Jaber, N., Hamarneh, C. & Murray, A. (2022). Age determination of runoff terrace systems in Petra, Jordan, using rock surface luminescence dating. Archaeological and Anthropological Sciences, 14(3), Article 48. https://doi.org/10.1007/s12520-022-01510-9
al Khasawneh, S., Alqudah, M., Murray, A. & Kafafi, Z. (2024). Investigating the Neolithic rubble layers of ‘Ain Ghazal, Jordan, using luminescence dating. Archaeological and Anthropological Sciences, 16, Article 41. https://doi.org/10.1007/s12520-024-01947-0
Allaart, L., Schomacker, A., Larsen, N. K., Nørmark, E., Rydningen, T. A., Farnsworth, W. R., Retelle, M., Brynjólfsson, S., Forwick, M. & Kjellman, S. E. (2021). Glacial history of the Åsgardfonna Ice Cap, NE Spitsbergen, since the last glaciation. Quaternary Science Reviews, 251, Article 106717. https://doi.org/10.1016/j.quascirev.2020.106717
Allaart, L., Christensen, N., Pérez, L. F., Bennike, O., Singhroha, S., Vangkilde-Pedersen, T., Nørgaard-Pedersen, N., Overgaard Leth, J., Winther, L. H., Prins, L. T., Regnéll, C. & Andresen, K. J. (2026). The drowned glacial landscape of Kattegat, Denmark. Quaternary Science Reviews, 381, Article 109905. https://doi.org/10.1016/j.quascirev.2026.109905
Allan, C., Avgustinov, P., Christensen, A. S., Hendren, L., Kuzins, S., Lhot´ak, O., de Moor, O., Sereni, D., Sittampalam, G. & Tibble, J. (2005). Adding Trace Matching with Free Variables to AspectJ. In Proc. 20th International Conference on Object-Oriented Programming Systems, Languages and Applications, OOPSLA 2005 (pp. 345-364)
Allan, C., Avgustinov, P., Christensen, A. S., Hendren, L. J., Kuzins, S., Lhoták, J., Lhoták, O., de Moor, O., Sereni, D., Sittampalam, G. & Tibble, J. (2005). abc: The AspectBench Compiler for AspectJ. In R. Glück & M. R. Lowry (Eds.), Generative Programming and Component Engineering, 4th International Conference, GPCE 2005 Proceedings (Tallinn, Estonia, September 29 - October 1, 2005) (pp. 10-16)
Allan, C., Avgustinov, P., Christensen, A. S., Dufour, B., Goard, C., Hendren, L. J., Kuzins, S., Lhoták, J., Lhoták, O., de Moor, O., Sereni, D., Sittampalam, G., Tibble, J. & Verbrugge, C. (2005). abc the aspectBench compiler for aspectJ a workbench for aspect-oriented programming language and compilers research. In R. Johnson & R. P. Gabriel (Eds.), Companion to the 20th Annual ACM SIGPLAN Conference on Object-Oriented Programming, Systems, Languages, and Applications, OOPSLA 2005 (San Diego, CA, USA, October 16-20, 2005) (pp. 88-89). Association for Computing Machinery.
Allan, E., de Vernal, A., Krawczyk, D., Moros, M., Radi, T., Rochon, A., Seidenkrantz, M. S. & Zaragosi, S. (2020). Distribution of dinocyst assemblages in surface sediment samples from the West Greenland margin. Marine Micropaleontology, 159, Article 101818. https://doi.org/10.1016/j.marmicro.2019.101818
Allan, E., Wang, Y., de Vernal, A., Gélinas, Y., Mucci, A. O., Seidenkrantz, M. S. & Douglas, P. M. J. (2026). Trophic Changes off Southwest Greenland During the Holocene and Their Influence on Carbon Burial. Geophysical Research Letters, 53(6), Article e2025GL120012. https://doi.org/10.1029/2025GL120012
Allen, D. E., Dalal, R. C., Rennenberg, H., Meyer, R. L., Reeves, S. & Schmidt, S. (2007). Spatial and temporal variation of nitrous oxide and methane flux between subtropical mangrove sediments and the atmosphere. Soil Biology & Biochemistry, 39, 622-631.
Allen, E. H. A., Courtney, D. G., Atkinson, S. D., Moore, J. E., Mairs, L., Toftgaard Poulsen, E., Schiroli, D., Maurizi, E., Cole, C., Hickerson, R. P., James, J., Murgatroyd, H., Smith, F. J. D., MacEwen, C., Enghild, J. J., Nesbit, M. A., Leslie Pedrioli, D. M., McLean, W. H. I. & Moore, C. B. T. (2015). Keratin 12 missense mutation induces the unfolded protein response and apoptosis in Meesmann epithelial corneal dystrophy. Human Molecular Genetics, 25(6), 1176-1191. https://doi.org/10.1093/hmg/ddw001
Allen, P., Bain, D. R., Bridgland, D. R., Buisson, P., Buylaert, J. P., Bynoe, R., George, W. H., Haggart, B. A., Horne, D. J., Littlewood, E. M., Lord, A. R., March, A. C., Mercer, I., Mercer, R., Murray, A. S., Penkman, K. E. H., Preece, R. C., Ratford, J., Schreve, D. C. ... White, T. S. (2022). Mid-Late Quaternary Fluvial Archives near the Margin of the MIS 12 Glaciation in Southern East Anglia, UK: Amalgamation of Multi-Disciplinary and Citizen-Science Data Sources. Quaternary, 5(3), Article 37. https://doi.org/10.3390/quat5030037
Allen, K., Brändle, F., Botvinick, M., Fan, J. E., Gershman, S. J., Gopnik, A., Griffiths, T. L., Hartshorne, J. K., Hauser, T. U., Ho, M. K., de Leeuw, J. R., Ma, W. J., Murayama, K., Nelson, J. D., van Opheusden, B., Pouncy, T., Rafner, J., Rahwan, I., Rutledge, R. B. ... Schulz, E. (2024). Using games to understand the mind. Nature Human Behaviour, 8(6), 1035-1043. https://doi.org/10.1038/s41562-024-01878-9
Allen, B. L., Abraham, A. J., Arlinghaus, R., Belant, J. L., Blumstein, D. T., Bobier, C., Bodenchuk, M. J., Clauss, M., Dawson, S. J., Derbyshire, S. W. G., Ferreira, S. M., Fleming, P. J. S., Forssman, T., Gorecki, V., Gortázar, C., Griffin, A. S., Hampton, J. O., Haswell, P. M., Kerley, G. I. H. ... von Essen, E. (2025). Ethical arguments that support intentional animal killing. Frontiers in Ecology and Evolution, 13, Article 1684894. https://doi.org/10.3389/fevo.2025.1684894
Allender, E., Bürgisser, P., Kjeldgaard-Pedersen, J. & Miltersen, P. B. (2005). On the Complexity of Numerical Analysis. Electronic Colloquium on Computational Complexity, (TR05-037), 1-12.
Allendorf, F. W., Christiansen, F., Dobson, T. & Eanes, W. F. (1979). Electrophoretic variation in large mammals I. The polar bear, Thalarctos maritimus. Hereditas, 91, 19-22.
Allieta, M., Scavini, M., Lo Presti, L., Coduri, M., Loconte, L., Cappelli, S., Oliva, C., Ghigna, P., Pattison, P. & Scagnoli, V. (2013). Charge ordering transition in GdBaCoO: Evidence of reentrant behavior. Physical Review B, 88(21). https://doi.org/10.1103/PhysRevB.88.214104
Allman, S. A., Jensen, H. H., Vijayakrishnan, B., Garnet, J. A., Leon, E., Liu, Y., Anthony, D. C., Sibson, N. R., Feizi, T., Matthews, S. & Davis, B. G. (2009). Potent Fluoro-oligosaccharide Probes of Adhesion in Toxoplasmosis. ChemBioChem, 10, 2522-2529.
Allred, J. M., Jia, S., Bremholm, M., Chan, B. C. & Cava, R. J. (2012). Ordered CoSn-type ternary phases in Co3Sn3-xGex. Journal of Alloys and Compounds, 539, 137-143. https://doi.org/10.1016/j.jallcom.2012.04.045
Allum, F., Burt, M., Amini, K., Boll, R., Köckert, H., Olshin, P. K., Bari, S., Bomme, C., Brauße, F., Cunha de Miranda, B., Düsterer, S., Erk, B., Géléoc, M., Geneaux, R., Gentleman, A. S., Goldsztejn, G., Guillemin, R., Holland, D. M. P., Ismail, I. ... Rolles, D. (2018). Coulomb explosion imaging of CH3I and CH2CII photodissociation dynamics. Journal of Chemical Physics, 149(20), 204313, 1-10. Article 204313. https://doi.org/10.1063/1.5041381
Almansa Guerra, J. F., Damgård, I. B. & Nielsen, J. B. (2006). Simplified Threshold RSA with Adaptive and Proactive Security. In S. Vaudenay (Ed.), Advances in Cryptology - Eurocrypt 2006: 24th Annual International Conference on the Theory and Applications of Cryptographic Techniques, St. Petersburg, Russia, May 28 - June 1, 2006. Proceedings (pp. 593-611). Springer. https://doi.org/10.1007/11761679_35
Almeida, A. M., Bassols, A., Bendixen, E., Bhide, M., Ceciliani, F., Cristobal, S., Eckersall, P. D., Hollung, K., Lisacek, F., Mazzucchelli, G., McLaughlin, M., Miller, I., Nally, J. E., Plowman, J., Renaut, J., Rodrigues, P., Roncada, P., Staric, J. & Turk, R. (2015). Animal board invited review: advances in proteomics for animal and food sciences. Animal, 9(1), 1-17. https://doi.org/10.1017/S1751731114002602
Almeida, C. M. R., Carvalho, P. N., Fernandes, J. P., Basto, M. C. P. & Mucha, A. P. (2016). Constructed wetlands for livestock wastewater treatment: Antibiotics removal and effects on CWs performance. In Phytoremediation: Management of Environmental Contaminants (Vol. 4, pp. 267-281). Springer Publishing Company. https://doi.org/10.1007/978-3-319-41811-7_14
Almeida, A. V., Jacinto, J. P., Guerra, J. P. L., Vieira, B. J. C., Waerenborgh, J. C., Jones, N. C., Hoffmann, S. V., Pereira, A. S. & Tavares, P. (2021). Structural features and stability of apo- and holo-forms of a simple iron–sulfur protein. European Biophysics Journal, 50(3-4), 561-570. https://doi.org/10.1007/s00249-021-01546-0
Almeida, A. V., Carvalho, A. J., Calmeiro, T., Jones, N. C., Hoffmann, S. V., Fortunato, E., Pereira, A. S. & Tavares, P. (2022). Condensation and protection of DNA by the Myxococcus xan-thus encapsulin: a novel function. International Journal of Molecular Sciences , 23(14), Article 7829. https://doi.org/10.3390/ijms23147829
Almenara, J. M., Astudillo-Defru, N., Bonfils, X., Forveille, T., Santerne, A., Albrecht, S., Barros, S. C. C., Bouchy, F., Delfosse, X., Demangeon, O., Diaz, R. F., Hébrard, G., Mayor, M., Neves, V., Rojo, P., Santos, N. C. & Wünsche, A. (2015). A HARPS view on K2-3. Astronomy & Astrophysics (A&A), 581, Article L7. https://doi.org/10.1051/0004-6361/201525918

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Vargas, P., Nogales, M., Jaramillo, P., Olesen, J. M., Traveset, A. & Heleno, R. (2014). Plant colonization across the Galápagos Islands: success of the sea dispersal syndrome. Botanical Journal of the Linnean Society, 174(3), 349-358. https://doi.org/10.1111/boj.12142
Van Meerbeek, K., Hermy, M. & Muys, B. (2018). Nature conservation and bioenergy production-a response to Kallimanis. Frontiers in Ecology and the Environment, 16(2), 75-76. https://doi.org/10.1002/fee.1768
Van Limbergen, T., Roegiers, I. H., Bonné, R., Mare, F., Haeldermans, T., Joos, B., Nouwen, O., Manca, J. V., Vangronsveld, J. & Thijs, S. (2022). Characterisation of Two Wood-Waste and Coffee Bean Husk Biochars for the Removal of Micropollutants from Water. Frontiers in Environmental Science, 10, Article 814267. https://doi.org/10.3389/fenvs.2022.814267
Van Limbergen, T., Bonné, R., Hustings, J., Valcke, R., Thijs, S., Vangronsveld, J. & Manca, J. V. (2022). Plant microbial fuel cells from the perspective of photovoltaics: Efficiency, power, and applications. Renewable and Sustainable Energy Reviews, 169, Article 112953. https://doi.org/10.1016/j.rser.2022.112953
van Heerwaarden, B., Lee, R. F. H., Overgaard, J. & Sgró, C. (2014). No patterns in thermal plasticity along a latitudial gradient in Drosophila simulans from eastern Australia. Journal of Evolutionary Biology, 27(11), 2541-2553. https://doi.org/10.1111/jeb.12510
Vangheel, M., Henau, S. D., Tilleman, L., Germani, F., Helbo, S., Desmet, F., Van Doorslaer, S., Hoogewijs, D., Schoofs, L., Fago, A., Moens, L., Dewilde, S. & Braeckman, B. B. (2014). GLB-33: when a globin hooks up with a G-protein coupled receptor. Poster session presented at XVIII Conference on Oxygen-Binding and Sensing Proteins, Sheffield, United Kingdom.
Vang, T., Lund-Hansen, L. C. & Morten, N. H. (2005). Lille Bælt. Vandmiljøovervågning maj 2005. Fyn, Sønderjylland og Vejle Amt: Klorofylmaksimum og hydraulisk kontrol i Lille Bælt. In Lille Bælt. Vandmiljøovervågning maj 2005. Fyn, Sønderjylland og Vejle Amt (pp. 44-69)
Vang, T. & Hansen, J. W. (2013). Ilt i vandsøjlen. Aarhus University, DCE - Danish Centre for Environment and Energy. DCE - Teknisk anvisning fra Det Marine Fagdatacenter No. M04, ver.1 http://bios.au.dk/videnudveksling/til-myndigheder-og-saerligt-interesserede/fagdatacentre/fdcmarintny/ta2011-2015/
Vang, T. (2013). CTD måling. Aarhus University, DCE - Danish Centre for Environment and Energy. DCE - Teknisk anvisning fra Det Marine Fagdatacenter No. M03 ver. 1 http://bios.au.dk/videnudveksling/til-myndigheder-og-saerligt-interesserede/fagdatacentre/fdcmarintny/ta2011-2015/
Vang, T. (2014). CTD måling. Aarhus University, DCE - Danish Centre for Environment and Energy. DCE - Teknisk anvisning fra Det Marine Fagdatacenter No. M03, ver.2 http://bios.au.dk/videnudveksling/til-myndigheder-og-saerligt-interesserede/fagdatacentre/fdcmarintny/ta2011-2015/
Vang, T. & Hansen, J. W. (2014). Ilt i vandsøjlen. Aarhus University, DCE - Danish Centre for Environment and Energy. DCE - Teknisk anvisning fra Det Marine Fagdatacenter No. M04 ver.2 http://bios.au.dk/videnudveksling/til-myndigheder-og-saerligt-interesserede/fagdatacentre/fdcmarintny/ta2011-2015/
Vandvik, V., Halbritter, A. H., Macias-Fauria, M., Maitner, B. S., Michaletz, S. T., Telford, R. J., Bison, N., Chacon-Labella, J., Cotner, S., Egelkraut, D., Garen, J., Gaudard, J., Geange, S. R., Rosati, M. A., Andersen, E. A. S., Ahler, S. J., Atkinson, J., Baumane, M., Bradler, P. M. ... Enquist, B. J. (2025). Plant traits and associated ecological data from global change experiments and climate gradients in Norway. Scientific Data, 12(1), Article 1477. https://doi.org/10.1038/s41597-025-05509-4
Vandsø, A., Leth-Espensen, P., Barfod, A. S., Oelsner, G. & Shepherd, N. (2025). Verden i vindueskarmen. In Plantefeber: Verden i vindueskarmen (pp. 14-25). Aarhus Universitetsforlag.
Vandieken, V., Mussmann, M., Niemann, H. H. & Jørgensen, BB. (2006). Desulfuromonas svalbardensis sp nov and Desulfuromusa ferrireducens sp nov., psychrophilic, Fe(III)-reducing bacteria isolated from Arctic sediments, Svalbard. International Journal of Systematic and Evolutionary Microbiology, 56, 1133-1139.
van de Velde, S. J., Hylén, A., Kononets, M., Marzocchi, U., Leermakers, M., Choumiline, K., Hall, P. O. J. & Meysman, F. J. R. (2020). Elevated sedimentary removal of Fe, Mn, and trace elements following a transient oxygenation event in the Eastern Gotland Basin, central Baltic Sea. Geochimica et Cosmochimica Acta, 271, 16-32. https://doi.org/10.1016/j.gca.2019.11.034
Van Der Putten, T. A. W., Verhees, J. J. F., Koma, Z., Van Hoof, P. H., Heijkers, D., De Boer, W. F., Esser, H. J., Hoogerwerf, G. & Lemmers, P. (2025). Insights into the fine-scale habitat use of Eurasian Water Shrew (Neomys fodiens) using radio tracking and LiDAR. Journal of Mammalogy, 106(3), 549-560. https://doi.org/10.1093/jmammal/gyae146
van der Plas, F., Janzen, T., Ordonez, A., Fokkema, W., Reinders, J., Etienne, R. S. & Olff, H. (2015). A new modeling approach estimates the relative importance of different community assembly processes. Ecology, 96(6), 1502-1515. https://doi.org/10.1890/14-0454.1
van der Hoop, J. M., Byron, M. L., Ozolina, K., Miller, D. L., Johansen, J. L., Domenici, P. & Steffensen, J. F. (2018). Turbulent flow reduces oxygen consumption in the labriform swimming shiner perch, Cymatogaster aggregata. Journal of Experimental Biology, 221(11), Article 168773. https://doi.org/10.1242/jeb.168773
van der Hoop, J. M., Fahlman, A., Shorter, K. A., Gabaldon, J., Rocho-Levine, J., Petrov, V. & Moore, M. J. (2018). Swimming energy economy in bottlenose dolphins under variable drag loading. Frontiers in Marine Science, 5, Article 465. https://doi.org/10.3389/fmars.2018.00465
van der Hoop, J. M., E. Nousek‐McGregor, A., P. Nowacek, D., Parks, S. E., Tyack, P. L. & Madsen, P. P. T. (2019). Foraging rates of ram-filtering North Atlantic right whales. Functional Ecology, 33(7), 1290-1306. https://doi.org/10.1111/1365-2435.13357
van den Thillart, G., Wilms, I., Nieveen, M., Weber, R. E. & Witte, F. (2018). Hypoxia-induced changes in hemoglobins of Lake Victoria cichlids. Journal of Experimental Biology, 221(17), Article 177832. https://doi.org/10.1242/jeb.177832