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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Conrado, G. K. & Pavlogiannis, A. (2024). A Better Approximation for Interleaved Dyck Reachability. In SOAP 2024 - Proceedings of the 13th ACM SIGPLAN International Workshop on the State Of the Art in Program Analysis (pp. 18-25). Association for Computing Machinery. https://doi.org/10.1145/3652588.3663318
Riis, M. & Lodahl, J. (2002). A bicriteria stochastic programming model for capacity expansion in telecommunications. Mathematical Methods of Operations Research, 56(1), 83-100. https://doi.org/10.1007/s001860200201
Hylleberg, J. (1992). A bid to conserve sea shells: ceramic shells. Phuket Marine Biological Center. Special Publications, 10, 47-50.
Holm, M. M., Naur, P., Vestergaard, B., Geballe, M. T., Gajhede, M., Kastrup, J. S., Traynelis, S. F. & Jensen, J. E. (2005). A bindingsite tyrosine shapes desensitization and agonist potency at the AMPA receptor GluR2: A mutagenic, kinetic and crystallographic study. Journal of Biological Chemistry, 280, 35469-35476.
Kjærgaard, T., Coriani, S. & Ruud, K. (2012). Ab initio calculation of magnetic circular dichroism. Wiley Interdisciplinary Reviews: Computational Molecular Science, 2(3), 443-455. https://doi.org/10.1002/wcms.1091
Coriani, S., Jørgensen, P., Rizzo, A., Ruud, K. & Olsen, J. (1999). Ab initio determinations of magnetic circular dichroism. Chemical Physics Letters, 300(1-2), 61-68. https://doi.org/10.1016/S0009-2614(98)01315-3
Brameier, M. & Wiuf, C. (2007). Ab initio identification of human micoRNAs based on structure motifs.. Poster session presented at Bioinformatics Conference 2007, Umeå, Sweden.
Brameier, M. & Wiuf, C. (2007). Ab initio identification of human micoRNAs based on structure motifs.. Poster session presented at ISMB/ECCB 2007, Wien, Austria.
Karamatskou, A., Santra, R. & Vendrell, O. (2017). Ab Initio Investigation of Nonlinear Mode Coupling in C60. The Journal of Physical Chemistry Letters, 8(22), 5543–5547. https://doi.org/10.1021/acs.jpclett.7b02573
Reichenbach, T., Mondal, K., Jaeger, M., Vent-Schmidt, T., Himmel, D., Dybbert, V., Bruix, A., Krossing, I., Walter, M. & Moseler, M. (2018). Ab initio study of CO2 hydrogenation mechanisms on inverse ZnO/Cu catalysts. Journal of Catalysis, 360, 168-174. https://doi.org/10.1016/j.jcat.2018.01.035
Coriani, S., Pecul, M., Rizzo, A., Jørgensen, P. & Jaszunski, M. (2002). Ab initio study of magnetochiral birefringence. Journal of Chemical Physics, 117, 6417-6428.
Svane, A., Temmerman, W. M., Szotek, Z., Petit, L., Strange, P. & Winter, H. (2000). Ab-initio Theory of Valency in Ytterbium Compounds. Physical Review B, 62, 13394.
Christensen, N. E., Novikov, D. L., Boers, D. J. & Velsen, J. L. V. (2000). Ab initio thermodynamics of bcc- and fcc cesium. Bull. Am. Phys. Soc., 45.
Larsen, B., Nørgaard, L., Labouriau, R. & Lundbye-Christenen, S. (2000). A binomial state-space models for studying the occurrence of respiratory diseases in Danish calves. Internal Report No. 2004-04
Valero Moreno, J., Pal, N., Dhakal, S., Walter, N. G. & Famulok, M. (2018). A bio-hybrid DNA rotor–stator nanoengine that moves along predefined tracks. Nature Nanotechnology, 13(6), 496-503. https://doi.org/10.1038/s41565-018-0109-z
Liang, X., Petersen, B. O., Duus, J. & Bols, M. (2001). A Bioisosteric Oligosaccharide Mimetic based on Isofagomine-type Monomers. J. Chem. Soc. Perkin 1, 2764-2773.
Frølich, S. & Birkedal, H. (2014). A biomineralized underwater attachment system operating under tension: Nano-mechanical properties of Anomia simplex. Poster session presented at Gordon Research Conference: Biomineralization, New London, NH, United States.
Goddiksen, M. P. & Nielsen, K. H. (2015). A Blended Learning Approach to Philosophy of Science. Poster session presented at Teaching philosophy of science to science students, Aarhus, Denmark.
Madsen, O. L. (1998). A Block-Structure Concurrent Object-Oriented Language. In Z. Zamir (Ed.), Handbook of Object-Technology CRC Press.
Bush, J. A., Meyer, S. M., Fuerst, R., Tong, Y., Li, Y., Benhamou, R. I., Aikawa, H., Zanon, P. R. A., Gibaut, Q. M. R., Angelbello, A. J., Gendron, T. F., Zhang, Y. J., Petrucelli, L., Heick Jensen, T., Childs-Disney, J. L. & Disney, M. D. (2022). A blood-brain penetrant RNA-targeted small molecule triggers elimination of r(G4C2)exp in c9ALS/FTD via the nuclear RNA exosome. Proceedings of the National Academy of Sciences (PNAS), 119(48), Article e2210532119. https://doi.org/10.1073/pnas.2210532119
McKenzie, D. J., Skov, P. V., Taylor, E. W. T., Wang, T. & Steffensen, J. F. (2009). Abolition of reflec bradycardiac vagotomy has no effect on the regulation of oxygen uptake by Atlantic cod in progressive hypoxia. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 153, 332-338.
Petersen, J. L. (2022). Abortive Topoisomerase I activity during replication: Global and local investigations. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Fogedby, H. & Imparato, A. (2011). A bound particle coupled to two thermostats. Journal of Statistical Mechanics: Theory and Experiment, (P05015 ).

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Miller, P. J. O., Johnson, M. P., Madsen, P. T., Biassoni, N., Quero, M. & Tyack, P. L. (2009). Using at-sea experiments to study the effects of airguns on the foraging behavior of sperm whales in the Gulf of Mexico. Deep-Sea Research Part I: Oceanographic Research Papers, 56, 1168-1181. https://doi.org/10.1016/j.dsr.2009.02.008
Alsos, I. G., Boussange, V., Rijal, D. P., Beaulieu, M., Brown, A. G., Herzschuh, U., Svenning, J. C. & Pellissier, L. (2024). Using ancient sedimentary DNA to forecast ecosystem trajectories under climate change. Philosophical Transactions of the Royal Society B: Biological Sciences, 379(1902), Article 20230017. https://doi.org/10.1098/rstb.2023.0017
Brix, H. & Arias, C. A. (2011). Use of willows in evapotranspirative systems for onsite wastewater management – theory and experiences from Denmark. In Proceedings International Workshop "STREPOW", February 23-24, 2011, Andrevlje-Novi Sad, Serbia (pp. 15-29)
Amersek, I., Hercog, A., Arias, C. A., Istenic, D. & Bulc, T. (2014). Use of vertical flow treatment wetlands in Slovenia. In 14th IWA International Conference on Wetland System for Pollution Control (ICWS2014): Conference proceedings (pp. 689 - 692). International Water Association - IWA.
Konnerup, D. & Brix, H. (2008). Use of ornamental plants to enhance the public perception of constructed wetland systems. In 8th INTECOL International Wetlands Conference - Abstracts (pp. 102)
Konnerup, D., Koottatep, T. & Brix, H. (2007). Use of Heliconia and Canna lilies in tropical constructed wetlands. In 2nd international symposium on wetland pollutant dynamics and control WETPOL - Extended abstracts - Publicationes instituti geographici universitatis tartuensis 104 (pp. 159-161)
Calheirosa, C. S. C., Quitérioa, P. V. B., Silvaa, G., Crispimb, L. F. C., Brix, H., Mouraa, S. C. & Castro, P. M. L. (2012). Use of constructed wetland systems with Arundo and Sarcocornia for polishing high salinity tannery wastewater. Journal of Environmental Management, 95(1), 66-71. https://doi.org/19.1916/j.jenvman.2011.10.003
Zurita, F., Vera-Puerto, I. L., Maine, A., Arias, C. & Sandoval Herazo, L. C. (2025). Use of constructed wetlands in Latin America: Assessment of current status, opportunities and challenges in Mexico, Chile and Argentina. Journal of Environmental Management, 395, Article 127900. https://doi.org/10.1016/j.jenvman.2025.127900
Paz y Miño, G., Balslev, H. & Valencia, R. (1995). Useful Lianas of the Siona-Secoya Indians from Amazonian Ecuador. Economic Botany, 49(3), 269-274.
Mogue Kamga, S., Brokamp, G., Cosiaux, A., Awono, A., Fürniss, S., Barfod, A. S., Muafor, F. J., Le Gall, P., Sonké, B. & Couvreur, T. L. P. (2020). Use and Cultural Significance of Raphia Palms. Economic Botany, 74(2), 207-225. https://doi.org/10.1007/s12231-020-09487-z
Lykke, A. M., Kristensen, M. & Ganaba, S. (2005). Usages locaux et tendences de la dynamique de 56 plantes ligneuses au Sahel. In SEREIN Occasional Paper (Vol. 19, pp. 143-160)
Lomstein, B. A. & Blackburn, H. (1989). Urea turnover in a coastal marine sediment measured by a 14C-urea short-term incubation. Journal of Microbiological Methods, 9, 297-308.
Pedersen, H., Lomstein, B. A., Isaksen, M. & Blackburn, H. (1993). Urea production by Thiosphaera pantotropha and by anaerobic enrichment cultures from marine sediments. FEMS Microbiology Ecology, 13, 31-36.
Mendes, S. B., Olesen, J. M., Nogales, M., Marrero, P., Romero, J., Nieves, C. & Heleno, R. (2025). Urbanization of seed dispersal networks. Conservation Biology, 39(6), Article e70097. https://doi.org/10.1111/cobi.70097
Bonte, D., Rose, C., Bastiaensen, T., Jesper Bechsgaard, J., Bilde, T., Dahirel, M., De Wolf, K., Thylys, H., Uytterschaut, T. & Vanthournout, B. (2023). Urbanization impacts short- but not long-distance natal dispersal in a common orb web spider. Oikos, 2023(12), Article e10278. https://doi.org/10.1111/oik.10278
Mimet, A., Pellissier, V., Quenol, H., Aguejdad, R., Dubreuil, V. & Roze, F. (2009). Urbanisation induces early flowering: evidence from Platanus acerifolia and Prunus cerasus. International Journal of Biometeorology, 53(3), 287-298. https://doi.org/10.1007/s00484-009-0214-7
Ejrnæs, R., Brunbjerg, A. K., Wind, P., Brøndum, L. & Hansen, M. D. D. (2015). Urban Green. En undersøgelse af vilde blomster som afsæt for en rigere natur I byerne. Aarhus University, DCE - Danish Centre for Environment and Energy. Technical Report from DCE - Danish Centre for Environment and Energy http://dce2.au.dk/pub/TR69.pdf
Esperon-Rodriguez, M., Arndt, S., Asibey, M. O., Augustinus, B. A., Bach, A., Ballinas, M., Barradas, V. L., Barton, D. N., Bauhus, J., Beaumont, L., Bissonnette, J. F., Brookhouse, M., Calaza-Martínez, P., Calfapietra, C., Lourenço, T. C., Cariñanos, P., Clemente, M., Conway, T., de Hoogh, K. ... Tjoelker, M. G. (2026). Urban forests as essential infrastructure for climate resilience and biodiversity: A call to policymakers. Plants People Planet, 8(1), 14-19. https://doi.org/10.1002/ppp3.70125
Brix, H. & Lyngby, J. E. (1985). Uptake and translocation of phosphorus in eelgrass (Zostera marina). Marine Biology, 90, 111-116.
Teng, S., Xu, C. & Svenning, J.-C. (2017). Upslope agricultural expansion caused mammal range contractions in China over the past two millennia. Abstract from 8th Biennial Conference of The International Biogeography Society Tucson, AZ, USA, Tucson, Arizona, United States. https://tucson2017ibs.files.wordpress.com/2016/07/full-program-book-tucson-ibs2.pdf
Toft, S. (2018). Ups and downs among Danish urban harvestmen. Bulletin of the British Arachnological Society, 17(8), 394-398. https://doi.org/10.13156/arac.2017.17.8.394
Chown, S. L., Duffy, G. A. & Sørensen, J. G. (2015). Upper Thermal tolerance in aquatic insects. Current Opinion in Insect Science, 11, 78-83. https://doi.org/10.1016/j.cois.2015.09.012
Hylleberg, J. (1992). Updated list of receivers of the TMMP Proceedings. Phuket Marine Biological Center. Special Publications, 11, 169-175.
Picotti, P., Dewilde, S., Fago, A., Hundahl, C., De Filippis, V., Moens, L. & Fontana, A. (2009). Unusual stability of human neuroglobin at low pH - molecular mechanisms and biological significance. FEBS journal, 276, 7027-7039.
Rodrigues, A. S. L., Monsarrat, S., Charpentier, A., Brooks, T. M., Hoffmann, M., Reeves, R., Palomares, M. L. D. & Turvey, S. T. (2019). Unshifting the baseline: a framework for documenting historical population changes and assessing long-term anthropogenic impacts. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1788), Article 20190220. https://doi.org/10.1098/rstb.2019.0220
Marghoub, A., Williams, C. J. A., Leite, J. V., Kirby, A. C., Kéver, L., Porro, L. B., Barrett, P. M., Bertazzo, S., Abzhanov, A., Vickaryous, M., Herrel, A., Evans, S. E. & Moazen, M. (2022). Unravelling the structural variation of lizard osteoderms. Acta Biomaterialia, 146, 306-316. https://doi.org/10.1016/j.actbio.2022.05.004
Ordonez, A. & Gill, J. L. (2024). Unravelling the functional and phylogenetic dimensions of novel ecosystem assemblages. Philosophical Transactions of the Royal Society B: Biological Sciences, 379(1902), Article 20230324. https://doi.org/10.1098/rstb.2023.0324
Mederer, D., Kattenborn, T., Cherif, E., Guimaraes-Steinicke, C., Joswig, J. S., Schneider, F. D. & Feilhauer, H. (2025). Unraveling the seasonality of functional diversity through remote sensing. Communications Earth and Environment, 6(1), Article 790. https://doi.org/10.1038/s43247-025-02646-x
Fago, A., Dalsgaard, T. & Simonsen, U. (2007). Unraveling the origin of the nitrite-mediated hypoxic vasodilation. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 146(4), S159. https://doi.org/10.1016/j.cbpa.2007.01.326
Burgers, T. M., Azetsu-Scott, K., Myers, P. G., Else, B. G. T., Miller, L. A., Rysgaard, S., Chan, W., Tremblay, J. É. & Papakyriakou, T. (2024). Unraveling the Biogeochemical Drivers of Aragonite Saturation State in Baffin Bay: Insights From the West Greenland Continental Shelf. Journal of Geophysical Research: Oceans, 129(8), Article e2024JC021122. https://doi.org/10.1029/2024JC021122