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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Christensen, S., Jensen, K., Mailund, T., Weber, H. (Ed.), Ehrig, H. (Ed.) & Reisig, W. (Ed.) (2001). State Space Methods for Timed Petri Nets. In Proc. of 2nd Int. Coll. on Petri Net Technologies for Modelling Communication Based Systems: DFG Research Group "Petri Net Technology" (pp. 33-42). DFG-Forschergruppe Petri Net Technologie.
Christensen, S., Kristensen, L. M., Aalst, W. M. P. V. D. (Ed.), Colom, J.-M. (Ed.), Kordon, F. (Ed.), Kotsis, G. (Ed.) & Moldt, D. (Ed.) (2003). State Space Analysis of Hierarchical Coloured Petri Nets. LINCOM Studies in Computer Science: LSCS 01: Petri Net Approaches for Modelling and Validation, (1), 1-16.
Christensen, S., Kristensen, L. M., Mailund, T., Margaria, T. (Ed.) & Yi, W. (Ed.) (2001). A Sweep-Line Method for State Space Exploration. In Lecture Notes in Computer Science (Lecture Notes in Computer Science 2031 ed., Vol. 2031, pp. 450-464). Springer.
Clemensen, J., Larsen, S. B. & Bardram, J. E. (2004). Developing Pervasive e-Health for Moving Experts from Hospital to Home. In Ikke angivet (pp. 441-448). International Association for Development, IADIS.
Clemensen, J., Larsen, S. B. & Ejskjær, N. (2004). Connecting Home and Clinican, Treatment of Diabetic Foot Ulcers at Home. In The CHI2004 workshop on HCI and Homecare: Connecting Families and Clinicians
Corry, A. V. (2001). Patterns in Software Development. (DAIMI PhD Dissertation PD-01-1 ed.) Department of Computer Science.
Cramer, R. & Damgård, I. B. (2001). Secure Distributed Linear Algebra in a Constant Number of Rounds. In J. Killian (Ed.), Advances in Cryptology - CRYPTO 2001: 21st Annual International Cryptology Conference, Santa Barbara, California, USA, August 19-23, 2001 Proceedings (pp. 119-137). Springer. https://doi.org/10.1007/3-540-44647-8_7
Cramer, R., Damgård, I. B. & Fehr, S. (2001). On the Cost of Reconstructing a Secret or VSS with Optimal Reconstruction. In J. Killian (Ed.), Advances in Cryptology - CRYPTO 2001: 21st Annual International Cryptology Conference, Santa Barbara, California, USA, August 19-23, 2001 Proceedings (pp. 503-524). Springer. https://doi.org/10.1007/3-540-44647-8_30
Cramer, R., Damgård, I. B. & Nielsen, J. B. (2001). Multiparty Computation from Threshold Homomorphic Encryption. In B. Pfitzmann (Ed.), Advances in Cryptology - EUROCRYPT 2001: International Conference on the Theory and Application of Cryptographic Techniques Innsbruck, Austria, May 6-10, 2001 Proceedings (pp. 280-300). Springer. https://doi.org/10.1007/3-540-44987-6_18
Crazzolara, F., Winskel, G., Agrawal, M. (Ed.) & Seth, A. (Ed.) (2002). Composing Strand Spaces. In Ikke angivet (2556 of Lecture Notes in Computer Science ed., Vol. 2556/2002, pp. 97-108). Springer.
Crazzolara, F. & Winskel, G. (2001). Events in Security Protocols. In Proceedings of the 8th ACM conference on Computer and Communications Security (pp. 96-105). Association for Computing Machinery.
Crazzolara, F., Winskel, G., Charpentier, M. (Ed.) & Sanders, B. (Ed.) (2001). Petri Nets in Cryptographic Protocols. In Proceedings of the 15th International Parallel & Distributed Processing Symposium (IPDPS-01) (Vol. 15th International Parallel and Distributed Processing Symposium (IPDPS'01) Workshops, pp. 149). IEEE Press.
Crepeau, C., Legare, F. & Salvail, L. (2001). How to Convert a Flavor of Quantum Bit Commitment. In Advances in cryptology - EUROCRYPT 2001: Lecture Notes in Computer Science 2045 (Vol. 2045, pp. 60-77). Springer. http://www.cki.au.dk/publication.html
Cryan, M. & Miltersen, P. B. (2001). On pseudorandom generators in NC0. In J. Sgall, A. Pultr & P. Kolman (Eds.), Mathematical Foundations of Computer Science 2001: Lecture Notes in Computer Science (Lecture Notes in Computer Science 2136 ed., Vol. 2136/2001, pp. 272-284). Springer.
Crépeau, C., Dumais, P., Mayers, D. & Salvail, L. (2003). Computational Collapse of Quantum State with Application to Oblivious Transfer. BRICS Report Series, (RS-03-37).
Crépeau, C., Dumais, P., Mayers, D., Salvail, L. & Naor, M. (Ed.) (2004). Computational Collapse of Quantum State with Application to Oblivious Transfer. In Ikke angivet (2951 i Lecture Notes in Computer Science ed., pp. 374-393). Springer.
Crépeau, C., Dumais, P., Mayers, D. & Salvail, L. (2003). On the Computational Collapse of Quantum Information. BRICS Report Series, (RS-03-3).
Damgård, I. B. & Cramer, R. (2004). Secret-Key Zero-Knowlegde and Non-interactive Verifiable Exponentiation. In M. Naor (Ed.), Theory of Cryptography: First Theory of Cryptography Conference, TCC 2004, Cambridge, MA, USA, February 19-21, 2004. Proceedings (pp. 223-237). Springer. https://doi.org/10.1007/978-3-540-24638-1_13
Damgård, I. B., Fehr, S., Morozov, K. & Salvail, L. (2004). Unfair Noisy Channels and Oblivious Transfer. In M. Naor (Ed.), Theory of Cryptography: First Theory of Cryptography Conference, TCC 2004, Cambridge, MA, USA, February 19-21, 2004. Proceedings (pp. 355-373). Springer. https://doi.org/10.1007/978-3-540-24638-1_20
Damgård, I. B., Fehr, S. & Salvail, L. (2004). Zero-Knowledge Proofs and String Commitments Withstanding Quantum Attacks. In M. Franklin (Ed.), Advances in Cryptology - CRYPTO 2004: 24th Annual International Cryptology Conference, Santa Barbara, California, USA, August 15-19, 2004. Proceedings (pp. 254-272). Springer. https://doi.org/10.1007/978-3-540-28628-8_16
Damgård, I. B. & Frandsen, G. S. (2003). Efficient Algorithms for gcd and Cubic Residuosity in the Ring of Eisenstein Integers. In A. Lingas & B. J. Nilsson (Eds.), Fundamentals of Computation Theory (pp. 109-117). Springer. https://doi.org/10.1007/978-3-540-45077-1_11
Damgård, I. B. & Fujisaki, E. (2002). A Statistically-Hiding Integer Commitment Scheme Based on Groups with Hidden Order. In Y. Zheng (Ed.), Advances in Cryptology - ASIACRYPT 2002: 8th International Conference on the Theory and Application of Cryptology and Information Security Queenstown, New Zealand, December 1-5, 2002 Proceedings (pp. 77-85). Springer. https://doi.org/10.1007/3-540-36178-2_8
Damgård, I. B. & Groth, J. (2003). Non-interactive and Reusable Non-malleable Commitment Schemes. In Proceedings of the thirty-fifth annual ACM symposium on Theory of computing (pp. 426-437). Association for Computing Machinery. https://doi.org/10.1145/780542.780605
Damgård, I. B., Groth, J., Salomonsen, G. & Gritzalis, D. (Ed.) (2002). The Theory and Implementation of Electronic Voting Systems. In Secure Electronic Voting (Vol. 7, pp. 77-100). Kluwer Academic Publishers.
Damgård, I. B. & Jurik, M. J. (2001). A Generalisation, a Simplification and some Applications of Paillier's Probabilistic Public-Key System. In K. Kim (Ed.), Public Key Cryptography: 4th International Workshop on Practice and Theory in Public Key Cryptosystems, PKC 2001 Cheju Island, Korea, February 13-15, 2001 Proceedings (pp. 119-136). Springer. https://doi.org/10.1007/3-540-44586-2_9
Damgård, I. B. & Jurik, M. J. (2003). A Length-Flexible Threshold Cryptosystem with Applications. In R. Safavi-Naini & J. Seberry (Eds.), Information Security and Privacy: 8th Australasian Conference, ACISP 2003 Wollongong, Australia, July 9–11, 2003 Proceedings (pp. 350-364). Springer. https://doi.org/10.1007/3-540-45067-X_30
Damgård, I. B. & Jurik, M. J. (2002). Client/Server Tradeoffs for On-line Elections. In D. Naccache & P. Pailier (Eds.), Public Key Cryptography: 5th International Workshop on Practice and Theory in Public Key Cryptosystems, PKC 2002 Paris, France, February 12-14, 2002 Proceedings (pp. 125-140). Springer. https://doi.org/10.1007/3-540-45664-3_9
Damgård, I. B. & Jurik, M. J. (2003). Scalable Key-Escrow. BRICS Report Series, (RS-03-22).
Damgård, I. B. & Koprowski, M. (2002). Generic Lower Bounds for Root Extraction and Signature Schemes in General Groups. In L. R. Knudsen (Ed.), Advances in Cryptology - EUROCRYPT 2002: International Conference on the Theory and Applications of Cryptographic Techniques Amsterdam, The Netherlands, April 28 - May 2, 2002 Proceedings (pp. 256-271). Springer. https://doi.org/10.1007/3-540-46035-7_17
Damgård, I. B. & Koprowski, M. (2001). Practical Threshold RSA Signatures Without a Trusted Dealer. In B. Pfitzmann (Ed.), Advances in Cryptology - EUROCRYPT 2001: International Conference on the Theory and Application of Cryptographic Techniques Innsbruck, Austria, May 6-10, 2001 Proceedings (pp. 152-165). Springer. https://doi.org/10.1007/3-540-44987-6_10
Damgård, I. B. & Nielsen, J. B. (2002). Expanding Pseudorandom Functions: or: From Known-Plaintext Security to Chosen-Plaintext Security. In M. Yung (Ed.), Advances in Cryptology - CRYPTO 2002: 22nd Annual International Cryptology Conference Santa Barbara, California, USA, August 18-22, 2002 Proceedings (pp. 449-464). Springer. https://doi.org/10.1007/3-540-45708-9_29
Damgård, I. B. & Nielsen, J. B. (2002). Perfect Hiding and Perfect Binding Universally Composable Commitment Schemes with Constant Expansion Factor. In M. Yung (Ed.), Advances in Cryptology - CRYPTO 2002: 22nd Annual International Cryptology Conference Santa Barbara, California, USA, August 18-22, 2002 Proceedings (pp. 581-596). Springer. https://doi.org/10.1007/3-540-45708-9_37
Damgård, I. B. & Nielsen, J. B. (2003). Universally Composable Efficient Multiparty Computation from Threshold Homomorphic Encryption. In D. Boneh (Ed.), Advances in Cryptology - CRYPTO 2003: 23rd Annual International Cryptology Conference, Santa Barbara, California, USA, August 17-21, 2003. Proceedings (pp. 247-264). Springer. https://doi.org/10.1007/978-3-540-45146-4_15
Damgård, I. B., Pedersen, T. B. & Salvail, L. (2004). On the Key-Uncertainty of Quantum Ciphers and the Computational Security of One-way Quantum Transmission. In C. Cachin & J. Camenisch (Eds.), Advances in Cryptology - EUROCRYPT 2004: International Conference on the Theory and Applications of Cryptographic Techniques, Interlaken, Switzerland, May 2-6, 2004. Proceedings (pp. 91-108). Springer. https://doi.org/10.1007/978-3-540-24676-3_6
Damian, D. & Danvy, O. (2001). A Simple CPS Transformation of Control-Flow Information. BRICS Report Series, (RS-01-55).
Damm, C. H. & Hansen, K. M. (2002). Distributing Knight. Using Type-Based Publish/Subscribe for Building Distributed Collaboration Tools. In K. Østerbye (Ed.), Proceedings of the Nordic workshop on Software Development Tools and Techniques: NWPER 2002 (pp. 155-158) http://www.it-c.dk/people/kasper/NWPER2002/papers/damm.pdf
Danvy, O. (2003). A Journey from Interpreters to Compilers and Virtual Machines. In F. Pfenning & Y. Smaragdakis (Eds.), Generative Programming and Component Engineering: Second International Conference, GPCE 2003, Erfurt, Germany, September 22-25, 2003. Proceedings (pp. 117). Springer. https://doi.org/10.1007/978-3-540-39815-8_7
Danvy, O. (2002). A New One-Pass Transformation into Monadic Normal Form. BRICS Report Series, (RS-02-52).
Danvy, O. (2003). A New One-Pass Transformation into Monadic Normal Form. In G. Hedin (Ed.), Compiler Construction: 12th International Conference, CC 2003 Held as Part of the Joint European Conferences on Theory and Practice of Software, ETAPS 2003 Warsaw, Poland, April 7–11, 2003 Proceedings (pp. 77-89). Springer. https://doi.org/10.1007/3-540-36579-6_6
Danvy, O. (2004). From Reduction-Based to Reduction-Free Normalization. BRICS Report Series, (RS-04-30).
Danvy, O. (2004). On Evaluation Contexts, Continuations, and the Rest of the Computation. In Ikke angivet (CSR-04-1 of Technical Reports ed., pp. 13-23). School of Computer Science, University of Birmingham.
Danvy, O. (Ed.) (2003). Special Issue of Higher-Order and Symbolic Computation: Partial Evaluation and Semantics-Based Program Manipulation. In P. Thiemann (Ed.), Higher-Order and Symbolic Computation: Theme Issue on Partial Evaluation and Semantics-Based Program Manipulation (PEPM 2002) (Vol. 16(4), pp. 295-401). Springer.
Danvy, O., Henglein, F. (Ed.), Mairson, H. (Ed.) & Pettorossi, A. (Ed.) (2003). Special issue of Higher-Order and Symbolic Computation: - in memory of Bob Paige. Springer.

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Pacheco, J. P., Aznarez, C., Cao, Y., Liu, Y., Levi, E. E., Korkmaz, M., Amorim, C. A., Özkan, K., Beklioglu, M., Baattrup-Pedersen, A. & Jeppesen, E. (2023). Periphyton in a changing world: unravelling the effects of global change stressors on freshwater periphyton in shallow lake mesocosms. Abstract from 3rd International Symposium on Aquatic Mesocosm-Based Research, Antalya, Turkey.
García Criado, M., Myers-Smith, I. H., Bjorkman, A. D., Normand, S., Blach-Overgaard, A., Thomas, H. J. D., Eskelinen, A., Happonen, K., Alatalo, J. M., Anadon-Rosell, A., Aubin, I., te Beest, M., Betway-May, K. R., Blok, D., Buras, A., Cerabolini, B. E. L., Christie, K., Cornelissen, J. H. C., Forbes, B. C. ... Virkkala, A. M. (2023). Plant traits poorly predict winner and loser shrub species in a warming tundra biome. Nature Communications, 14(1), Article 3837. https://doi.org/10.1038/s41467-023-39573-4
Pandit, S., Jacquemin, L., Zhang, J., Gao, Z., Nishina, Y., Meyer, R. L., Mijakovic, I., Bianco, A. & Pang, C. (2023). Polymyxin B complexation enhances the antimicrobial potential of graphene oxide. Frontiers in Cellular and Infection Microbiology, 13, Article 1209563. https://doi.org/10.3389/fcimb.2023.1209563
Ahmed, A. S., Chala, D., Kufa, C. A., Atickem, A., Bekele, A., Svenning, J. C. & Zinner, D. (2023). Potential changes in the extent of suitable habitats for geladas (Theropithecus gelada) in the Anthropocene. BMC Ecology and Evolution, 23(1), Article 65. https://doi.org/10.1186/s12862-023-02173-3
Nuijten, R. J. M., Katzner, T. E., Allen, A. M., Bijleveld, A. I., Boorsma, T., Börger, L., Cagnacci, F., Hart, T., Henley, M. A., Herren, R. M., Kok, E. M. A., Maree, B., Nebe, B., Shohami, D., Vogel, S. M., Walker, P., Heitkönig, I. M. A. & Milner-Gulland, E. J. (2023). Priorities for translating goodwill between movement ecologists and conservation practitioners into effective collaboration. Conservation Science and Practice, 5(1), Article e12870. https://doi.org/10.1111/csp2.12870
Vivier, F., Wells, R. S., Hill, M. C., Yano, K. M., Bradford, A. L., Leunissen, E. M., Pacini, A., Booth, C. G., Rocho-Levine, J., Currie, J. J., Patton, P. T. & Bejder, L. (2023). Quantifying the age structure of free-ranging delphinid populations: Testing the accuracy of Unoccupied Aerial System photogrammetry. Ecology and Evolution, 13(6), Article e10082. https://doi.org/10.1002/ece3.10082
Lenton, T. M., Xu, C., Abrams, J. F., Ghadiali, A., Loriani, S., Sakschewski, B., Zimm, C., Ebi, K. L., Dunn, R. R., Svenning, J. C. & Scheffer, M. (2023). Quantifying the human cost of global warming. Nature Sustainability, 6(10), 1237-1247. https://doi.org/10.1038/s41893-023-01132-6
Koger, B., Deshpande, A., Kerby, J. T., Graving, J. M., Costelloe, B. R. & Couzin, I. D. (2023). Quantifying the movement, behaviour and environmental context of group-living animals using drones and computer vision. Journal of Animal Ecology, 92(7), 1357-1371. https://doi.org/10.1111/1365-2656.13904
Mantoani, M. C., Emygdio, A. P. M., Degobbi, C., Sapucci, C. R., Guerra, L. C. C., Dias, M. A. F. S., Dias, P. L. S., Zanetti, R. H. S., Rodrigues, F., Araujo, G. G., Silva, D. M. C., Filho, V. B. D., Boschilia, S. M., Martins, J. A., Carotenuto, F., Šantl-Temkiv, T., Morris, C. E. & Gonçalves, F. L. T. (2023). Rainfall effects on vertical profiles of airborne fungi over a mixed land-use context at the Brazilian Atlantic Forest biodiversity hotspot. Agricultural and Forest Meteorology, 331, Article 109352. https://doi.org/10.1016/j.agrformet.2023.109352
Verdú, M., Garrido, J. L., Alcántara, J. M., Montesinos-Navarro, A., Aguilar, S., Aizen, M. A., Al-Namazi, A. A., Alifriqui, M., Allen, D., Anderson-Teixeira, K. J., Armas, C., Bastida, J. M., Bellido, T., Bonanomi, G., Paterno, G. B., Briceño, H., de Oliveira, R. A. C., Campoy, J. G., Chaieb, G. ... Zamora, R. (2023). RecruitNet: A global database of plant recruitment networks. Ecology, 104(2), Article e3923. https://doi.org/10.1002/ecy.3923
Quadra, G., Boonman, C. C. F., Vroom, R., Temmink, R., Smolders, A., Geurts, J., Aben, R., Weideveld, S. & Fritz, C. (2023). Removing 10 cm of degraded peat mitigates unwanted effects of peatland rewetting: a mesocosm study. Biogeochemistry, 163(1), 65-84. https://doi.org/10.1007/s10533-022-01007-6
Neves, B., Ferreira, P. D. L., Prosdocimi, F., Kessous, I. M., Couto, D. R., Moura, R. L., Salgueiro, F., Costa, A. F., Bacon, C. D. & Antonelli, A. (2023). Repeated evolution of pollination syndromes in a highly diverse bromeliad lineage is correlated with shifts in life form and habitat. Botanical Journal of the Linnean Society, 203(2), 111-122. Article boad015. https://doi.org/10.1093/botlinnean/boad015
M, Z., M, B., S, B., U, C., Vg, C., Marzocchi, U., Pc, M., A, Z. & Es, B. (2023). Role of crab holobionts in benthic N cycling in mangroves with different trophic status. Mar Ecol Prog Ser, 712, 87-99. https://doi.org/10.3354/meps14327
Neuffer, B., Bechsgaard, J., Paetsch, M., Titel, C., Wesse, C., Bona, E., Schimpf, R., Žerdoner Čalasan, A. & Hurka, H. (2023). S-alleles and mating system in natural populations of Capsella grandiflora (Brassicaceae) and its congeneric relatives. Flora: Morphology, Distribution, Functional Ecology of Plants, 299, Article 152206. https://doi.org/10.1016/j.flora.2022.152206
Wallach, A. D., Ramp, D., Benítez-López, A., Wooster, E. I. F., Carroll, S., Carthey, A. J. R., Rogers, E. I. E., Middleton, O., Zawada, K. J. A., Svenning, J. C., Avidor, E. & Lundgren, E. (2023). Savviness of prey to introduced predators. Conservation Biology, 37(2), Article e14012. https://doi.org/10.1111/cobi.14012
Gimenez-Grau, P., Camarero, L., Palacín-Lizarbe, C., Sala-Faig, M., Zufiaurre, A., Pla-Rabes, S., Felip, M. & Catalan, J. (2023). Self-filling enclosures to experimentally assess plankton response to pulse nutrient enrichments. Journal of Plankton Research, 45(2), 266-277. https://doi.org/10.1093/plankt/fbac074
Steininger, F. (2023). Sensing of pH-Dependent Analytes. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Merl, T. (2023). Sensing Soil Processes - Visualizing Ammonia Dynamics and Soil Microenvironments. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Hoeks, S., Huijbregts, M. A. J., Boonman, C. C. F., Faurby, S., Svenning, J.-C., Harfoot, M. B. J. & Santini, L. (2023). Shifts in ecosystem equilibria following trophic rewilding. Diversity and Distributions, 29(12), 1512-1526. https://doi.org/10.1111/ddi.13786
Istenic, D. & Arias, C. A. (2023). Sistemas evaporativos con sauces. In Soluciones basadas en la naturaleza para el tratamiento de aguas residuales (pp. 46-49). IWA Publishing.
Gonzalez-Flo, E., Ortiz, A., A. Arias, C., Díez-Montero, R., Kohlheb, N., Schauser, U. H., García, J. & Gregersen, P. K. S. (2023). Sludge Treatment Wetland for Treating Microalgae Digestate Grown in Agricultural Runoff: A Technical, Economic, and Environmental Assessment. Water, 15(12), Article 2159. https://doi.org/10.3390/w15122159
Alexander, G. J. & Wang, T. (2023). Snake foraging ecology and digestive physiology: Integrative biology and evolving paradigms. In D. Penning (Ed.), Snakes: Morphology, Function, and Ecology (pp. 313-342). Nova Science Publishers. https://doi.org/10.52305/YHUZ3307