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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Brodal, G. S., Fagerberg, R. & Jacob, R. (2002). Cache-Oblivious Search Trees via Binary Trees of Small Height. In Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms (pp. 39-48). Association for Computing Machinery.
Brodal, G. S., Fagerberg, R., Mailund, T., Pedersen, C. N. S. & Phillips, D. (2003). Speeding Up Neighbour-Joining Tree Construction. (Work package 5 ed.) ALCOM-FT.
Brodal, G. S., Fagerberg, R., Meyer, U. & Zeh, N. (2004). Cache-Oblivious Data Structures and Algorithms for Undirected Breadth-First Search and Shortest Paths. In T. Hagerup & J. Katajainen (Eds.), Algorithm Theory - SWAT 2004: 9th Scandinavian Workshop on Algorithm Theory, Humlebaek, Denmark, July 8-10, 2004. Proceedings (pp. 480-492). Springer. https://doi.org/10.1007/978-3-540-27810-8_41
Brodal, G. S., Fagerberg, R. & Moruz, G. (2004). On the Adaptiveness of Quicksort. BRICS Report Series, (RS-04-27).
Brodal, G. S., Fagerberg, R., Pedersen, C. N. S., Eades, P. (Ed.) & Takaoka, T. (Ed.) (2001). Computing the Quartet Distance Between Evolutionary Trees in Time O(n log² n). In Proceedings of Algorithms and Computation : 12th International Symposium, ISAAC 2001 (2223 of Lecture Notes in Computer Science ed., Vol. 2223/2001, pp. 731-742). Springer.
Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Östlin, A. (2001). The Complexity of Constructing Evolutionary Trees Using Experiments. In F. Orejas, P. G. Spirakis & J. van Leeuwen (Eds.), Automata, Languages and Programming: 28th International Colloquium, ICALP 2001 Crete, Greece, July 8–12, 2001 Proceedings (pp. 140-151). Springer. https://doi.org/10.1007/3-540-48224-5_12
Brodal, G. S., Fagerberg, R. & Vinther, K. (2004). Engineering a Cache-Oblivious Sorting Algorithm. In Proceedings of the Sixth Annual Workshop on Algorithm Engineering and Experiments, ALENEX '04 (pp. 4-17). Society for Industrial and Applied Mathematics.
Brodal, G. S., Fagerberg, R., Östlin, A., Pedersen, C. N. S. & Rao, S. S. (2003). Computing Refined Buneman Trees in Cubic Time. In G. Benson & R. Page (Eds.), Algorithms in Bioinformatics: Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003. Proceedings (pp. 259-270). Springer. https://doi.org/10.1007/978-3-540-39763-2_20
Brodal, G. S. & Jacob, R. (2002). Dynamic Planar Convex Hull. In Proceedings of the 43rd Annual IEEE Symposium on Foundations of Computer Science: (pp. 617-626). IEEE Press. https://doi.org/10.1109/SFCS.2002.1181875
Brodal, G. S. & Jacob, R. (2001). Time-dependent Networks as Models to Achieve Fast Exact Time-table Queries. Electronic Colloquium on Computational Complexity, 92(ALCOMFT-TR-01-176).
Brodal, G. S., Lagogiannis, G., Makris, C., Tsakalidis, A. & Tsichlas, K. (2003). Optimal Finger Search Trees in the Pointer Machine. Journal of Computer and System Sciences, 67(2), 381-418. https://doi.org/10.1016/S0022-0000(03)00013-8
Brodal, G. S., Lyngsø, R. B., Östlin, A. & Pedersen, C. N. S. (2002). Solving the String Statistics Problem in Time O(n log n). In P. Widmayer, S. Eidenbenz, F. Triguero, R. Morales, R. Conejo & M. Hennessy (Eds.), Automata, Languages and Programming: 29th International Colloquium, ICALP 2002 Málaga, Spain, July 8–13, 2002 Proceedings (pp. 728-739). Springer. https://doi.org/10.1007/3-540-45465-9_62
Brodal, G. S., Makris, C., Sioutas, S., Tsakalidis, A. K. & Tsichlas, K. (2002). Optimal Solutions for the Temporal Precedence Problem. Algorithmica, 33(4), 494-510. https://doi.org/10.1007/s00453-002-0935-z
Brodal, G. S. & Pinotti, M. C. (2001). Comparator Networks for Binary Heap Construction. Theoretical Computer Science, 250(1-2), 235-245. https://doi.org/10.1016/S0304-3975(99)00137-1
Buhrman, H., Miltersen, P. B., Radhakrishnan, J. & Venkatesh, S. (2002). Are Bitvectors Optimal? S I A M Journal on Computing, 31(6), 1723-1744. https://doi.org/10.1137/S0097539702405292
Byskov, J. M., Madsen, B. A. & Skjernaa, B. (2003). New Algorithms for Exact Satisfiability. BRICS Report Series, (RS-03-30).
Bødker, S. & Christiansen, E. (2002). Lost and Found in Flexibility. In K. Bødker, M. K. Pedersen, J. Simonsen & M. T. Vendelø (Eds.), Proceedings of the 25th Information Systems Research Seminar in Scandinavia Human-Computer Interaction Resource Network.
Bødker, S., Kristensen, J. F., Nielsen, C. & Sperschneider, W. (2003). Technology for Boundaries. In Proceedings of the 2003 international ACM SIGGROUP conference on Supporting group work (pp. 311-320). Association for Computing Machinery. https://doi.org/10.1145/958160.958210
Bødker, S. & Iversen, O. S. (2002). Staging a Professional Participatory Design Practice: Moving PD beyond the Initial Fascination of User Involvement. In O. W. Bertelsen (Ed.), Proceedings of the second Nordic conference on Human-computer interaction (pp. 11 - 18). Association for Computing Machinery. https://doi.org/10.1145/572020.572023
Büscher, M., Eriksen, M. A., Kristensen, J. F. & Mogensen, P. H. (2004). Ways of Grounding Imagination. In PDC 04 Proceedings of the eighth conference on Participatory design: Artful Integration: Interweaving Media, Materials and Practices (Vol. 1, pp. 193-203). Association for Computing Machinery. https://doi.org/10.1145/1011870.1011893
Büscher, M., Gill, S., Mogensen, P. H. & Shapiro, D. (2001). Landscapes of Practice: Bricolage as a Method for Situated Design. Computer Supported Cooperative Work, 10(1), 1-28. https://doi.org/10.1023/A:1011293210539
Büscher, M., Hartswood, M., Mogensen, P. H., Procter, R., Shapiro, D., Slack, R. & Voss, A. (2002). Promises, Premises and Risks: Sharing Responsibilities, Working Up Trust and Sustaining Commitment in Participatory Design Projects. In Proceedings of PDC 2002
Büscher, M., Krogh, P., Mogensen, P. & Shapiro, D. (2001). Vision on the move - technologies for the footloose. Appliance Design, 1(1), 11-14.
Büscher, M., Mogensen, P. H. & Shapiro, D. (2002). Spaces of Practice. In W. Prinz, M. Jarke, Y. Rogers, K. Schmidt & V. Wulf (Eds.), Proceedings of the seventh conference on European Conference on Computer Supported Cooperative Work (pp. 139-158). Springer. https://doi.org/10.1007/0-306-48019-0_8
Cáccamo, M. J., Winskel, G., Boulton, R. J. (Ed.) & Jackson, P. B. (Ed.) (2001). A Higher-Order Calculus for Categories. In Lecture Notes in Computer Science: Theorem Proving in Higher Order Logics (Lecture Notes in Computer Science ed., Vol. 2152, pp. 136-153). Springer.
Cahill, V., Gray, E., Seigneur, J., Jensen, C., Chen, Y., Shand, B., Dimmock, N., Twigg, A., Bacon, J., English, C., Wagealla, W., Terzis, S., Nixon, P., Serugendo, G. D. M., Bryce, C., Carbone, M., Krukow, K. & Nielsen, M. (2003). Using trust for Secure Collaboration in Uncertain Environments. I E E E Pervasive Computing, 2(3), 52-61. https://doi.org/10.1109/MPRV.2003.1228527
Canetti, R., Damgård, I. B., Dziembowski, S., Ishai, Y. & Malkin, T. (2004). Adaptive versus Non-Adaptive Security of Multi-Party Protocols. Journal of Cryptology, 17(3), 153-207. https://doi.org/10.1007/s00145-004-0135-x
Canetti, R., Damgård, I. B., Dziembowski, S., Ishai, Y. & Malkin, T. (2001). On Adaptive vs. Non-adaptive Security of Multiparty Protocols. In B. Pfitzmann (Ed.), Advances in Cryptology --- EUROCRYPT 2001: International Conference on the Theory and Application of Cryptographic Techniques Innsbruck, Austria, May 6-10, 2001 Proceedings (pp. 262-279). Springer. https://doi.org/10.1007/3-540-44987-6_17
Carbone, M., Maffeis, S., Nestmann, U. (Ed.) & Panangaden, P. (Ed.) (2002). On the Expressive Power of Polyadic Synchronisation in π- calculus. In Electronic Notes in Theoretical Computer Science: CONCUR 2002 Satellite Workshops (68(2) of Electronic Notes in TCS ed., Vol. Expressiveness in Concurrency, pp. 3. artikel). Elsevier Science Publishers.
Carbone, M. & Maffeis, S. (2003). On the Expressive Power of Polyadic Synchronisation in Pi-Calculus. Nordic Journal of Computing, 10(2), 70-98.
Carbone, M., Nielsen, M. & Sassone, V. (2004). A Calculus for Trust Management. In K. Lodaya & M. Mahajan (Eds.), FSTTCS 2004: Foundations of Software Technology and Theoretical Computer Science: 24th International Conference, Chennai, India, December 16-18, 2004. Proceedings (pp. 161-173). Springer. https://doi.org/10.1007/978-3-540-30538-5_14
Carbone, M., Nielsen, M., Sassone, V., Cerone, A. (Ed.) & Lindsay, P. (Ed.) (2003). A Formal Model for Trust in Dynamic Networks. In First International Conference on Software Engineering and Formal Methods, 2003.Proceedings. (pp. 54-61). IEEE. https://doi.org/10.1109/SEFM.2003.1236207
Carbone, M., Nielsen, M. & Sassone, V. (2004). Trust in Global Computing. Association for Logic Programming Newsletter, 17(4).
Caspersen, M. E. (2003). An Inverted Curriculum for CS1. In Frontiers in Education, 2003. FIE 2003. 33rd Annual (Vol. 1). IEEE Press. https://doi.org/10.1109/FIE.2003.1263334
Caspersen, M. E. (2004). Discussant Submission. Paper presented at 3rd "Killer Examples" for Design Patterns and Objects First Workshop at OOPSLA 2004, Vancouver, British Columbia, Canada.
Caspersen, M. E. & Christensen, H. B. (2003). The Need for Killer Examples for Object-Oriented Frameworks. In OOPSLA Workshop "Killer Examples": Conference on Object Oriented Programming Systems Languages and Applications Association for Computing Machinery.
Cattani, G. L. & Winskel, G. (2003). Presheaf Models for CCS-like Languages. Theoretical Computer Science, 300(1-3), 47-89.
Cattani, G. L. & Winskel, G. (2004). Profunctors, Open Maps and Bisimulation. BRICS Report Series, (RS-04-22).
Christensen, A. S. (2003). Programanalyse - en metode til fejlfinding i software. In Aarhus Universitets Forskningsfonds Årsberetning 2002: Bidrag til forskningsformidlende bog/antologi (Vol. au01_2006_c6091f70-983b-11da-bee9-02004c4f4f50, pp. A-59). Aarhus Universitetsforlag.
Christensen, A. S. & Møller, A. (2002). JWIG User Manual. BRICS Notes Series, (NS-02-6).
Christensen, H. B. (2003). Software Testing Requires Variability. In J. van Gurp & J. Bosch (Eds.), Proceedings of Workshop on Software Variability Management (pp. 118-120). University of Groningen.
Christensen, H. B. (2003). Systematic Testing should not be a Topic in the Computer Science Curriculum! In D. Finkel (Ed.), Proceedings of 8th Annual Conference on Innovation and Technology in Computer Science Education: ITiCSE 2003 (pp. 7-10). Society for Industrial and Applied Mathematics. https://doi.org/10.1145/961511.961517
Christensen, H. B. (2001). Tracking Change in rapid and eXtreme Development: A Challenge to SCM-tools? In A. van der Hoek (Ed.), Proceedings of Tenth International Workshop on Software Configuration Management, SCM-10 (pp. 1-31). UCI. Machine Learning Repository. Center for Machine Learning and Intelligent Systems. http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.29.3055&rep=rep1&type=pdf
Christensen, H. B. (2002). Using Logic Programming to Detect Activities in Pervasive Healthcare. In P. J. Stuckey (Ed.), Logic Programming: 18th International Conference, ICLP 2002 Copenhagen, Denmark, July 29 – August 1, 2002 Proceedings (2401 ed., pp. 185-199). Springer. https://doi.org/10.1007/3-540-45619-8_29
Christensen, H. B. & Bardram, J. (2002). Supporting Human Activities - Exploring Activity-Centered Computing. In G. Borriello & L. E. Holmquist (Eds.), UbiComp 2002: Ubiquitous Computing: 4th International Conference Göteborg, Sweden, September 29 – October 1, 2002 Proceedings (pp. 107-116). Springer. https://doi.org/10.1007/3-540-45809-3_8
Christensen, M. (2003). WorkSPACE. Paper presented at Workspace Venezia 2003 - Shaping the future workspace - Essential Tools for the future, Venedig, Italy. http://e-locus.fundaciontekniker.com/venezia03/
Christensen, M. (2003). WorkSPACE: Augmenting the work environment through spatial artifacts. Paper presented at MILK Conference - Designing Work Spaces of the Future, Bruxelles, Belgium. http://www.milkforum.com

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Scholz, V. V. (2022). Cable bacteria in vegetated aquatic systems. [PhD thesis, Aarhus University]. Aarhus Universitet.
Boukens, B. J. D., Joyce, W., Kristensen, D. L., Hooijkaas, I., Jongejan, A., Wang, T. & Jensen, B. (2022). Catecholamines are key modulators of ventricular repolarization patterns in the ball python (Python regius). Journal of General Physiology, 154(2), Article e202012761. https://doi.org/10.1085/jgp.202012761
Davoli, M., Ghoddousi, A., Sabatini, F. M., Fabbri, E., Caniglia, R. & Kuemmerle, T. (2022). Changing patterns of conflict between humans, carnivores and crop-raiding prey as large carnivores recolonize human-dominated landscapes. Biological Conservation, 269, Article 109553. https://doi.org/10.1016/j.biocon.2022.109553
Van Limbergen, T., Roegiers, I. H., Bonné, R., Mare, F., Haeldermans, T., Joos, B., Nouwen, O., Manca, J. V., Vangronsveld, J. & Thijs, S. (2022). Characterisation of Two Wood-Waste and Coffee Bean Husk Biochars for the Removal of Micropollutants from Water. Frontiers in Environmental Science, 10, Article 814267. https://doi.org/10.3389/fenvs.2022.814267
Lundgren, E. J., Moeller, K. T., Clyne, M. O., Middleton, O. S., Mahoney, S. M. & Kwapich, C. L. (2022). Cicada nymphs dominate American black bear diet in a desert riparian area. Ecology and Evolution, 12(3), Article e8577. https://doi.org/10.1002/ece3.8577
Pacherres, C. O., Ahmerkamp, S., Koren, K., Richter, C. & Holtappels, M. (2022). Ciliary flows in corals ventilate target areas of high photosynthetic oxygen production. Current Biology, 32(19), 4150-4158.e3. https://doi.org/10.1016/j.cub.2022.07.071
Lindén, E., te Beest, M., Aubreu, I., Moritz, T., Sundqvist, M. K., Barrio, I. C., Boike, J., Bryant, J. P., Bråthen, K. A., Buchwal, A., Bueno, C. G., Currier, A., Egelkraut, D. D., Forbes, B. C., Hallinger, M., Heijmans, M., Hermanutz, L., Hik, D. S., Hofgaard, A. ... Olofsson, J. (2022). Circum-Arctic distribution of chemical anti-herbivore compounds suggests biome-wide trade-off in defence strategies in Arctic shrubs. Ecography, 2002(11), Article e06166. https://doi.org/10.1111/ecog.06166
Wardiatno, Y., Aini, N. K., Mashar, A., Zairion , Z., Funch, P., Hastuti , Y. P. & Sangaji, U. (2022). Citizen Science Approach for Indonesian Horseshoe Crab Conservation. In International Horseshoe Crab Conservation and Research Efforts: 2007- 2020 (pp. 497-509). Springer. https://doi.org/10.1007/978-3-030-82315-3_28
Liang, J., Gamarra, J. G. P., Picard, N., Zhou, M., Pijanowski, B., Jacobs, D. F., Reich, P. B., Crowther, T. W., Nabuurs, G. J., de-Miguel, S., Fang, J., Woodall, C. W., Svenning, J. C., Jucker, T., Bastin, J. F., Wiser, S. K., Slik, F., Hérault, B., Alberti, G. ... Serra-Diaz, J. M. (2022). Co-limitation towards lower latitudes shapes global forest diversity gradients. Nature Ecology & Evolution, 6(10), 1423-1437. https://doi.org/10.1038/s41559-022-01831-x
Fricke, E. C., Hsieh, C., Middleton, O., Gorczynski, D., Cappello, C. D., Sanisidro, O., Rowan, J., Svenning, J. C. & Beaudrot, L. (2022). Collapse of terrestrial mammal food webs since the Late Pleistocene. Science, 377(6609), 1008-1011. https://doi.org/10.1126/science.abn4012
Knutsen, H., Catarino, D., Rogers, L., Sodeland, M., Mattingsdal, M., Jahnke, M., Hutchings, J. A., Mellerud, I., Espeland, S. H., Johanneson, K., Roth, O., Hansen, M. M., Jentoft, S., André, C. & Jorde, P. E. (2022). Combining population genomics with demographic analyses highlights habitat patchiness and larval dispersal as determinants of connectivity in coastal fish species. Molecular Ecology, 31(9), 2562-2577. https://doi.org/10.1111/mec.16415
Sert, M. F., Niemann, H., Reeves, E. P., Granskog, M. A., Hand, K. P., Kekäläinen, T., Jänis, J., Rossel, P. E., Ferré, B., Silyakova, A. & Gründger, F. (2022). Compositions of dissolved organic matter in the ice-covered waters above the Aurora hydrothermal vent system, Gakkel Ridge, Arctic Ocean. Biogeosciences, 19(8), 2101-2120. https://doi.org/10.5194/bg-19-2101-2022
Willi, Y., Kristensen, T. N., Sgro, C. M., Weeks, A. R., Ørsted, M. & Hoffmann, A. A. (2022). Conservation genetics as a management tool: The five best-supported paradigms to assist the management of threatened species. Proceedings of the National Academy of Sciences (PNAS), 119(1), Article e2105076119. https://doi.org/10.1073/pnas.2105076119
Știrbu, M. I., Roibu, C. C., Carrer, M., Mursa, A., Unterholzner, L. & Prendin, A. L. (2022). Contrasting Climate Sensitivity of Pinus cembra Tree-Ring Traits in the Carpathians. Frontiers in Plant Science, 13, Article 855003. https://doi.org/10.3389/fpls.2022.855003
Milsom, W. K., Gilmour, K. M., Perry, S., Gargaglioni, L. H., Hedrick, M. S., Kinkead, R. & Wang, T. (2022). Control of Breathing in Ectothermic Vertebrates. Comprehensive Physiology, 12(4), 3869-3988. https://doi.org/10.1002/cphy.c210041
Liu, L.-L., Yin, M.-Q., Guo, X., Wang, J.-W., Cai, Y.-F., Wang, C., Yu, X., Du, N., Brix, H., Eller, F., Lambertini, C. & Guo, W. (2022). Cryptic lineages and potential introgression in a mixed‐ploidyspecies (Phragmites australis) across temperate China. Journal of Systematics and Evolution, 60(2), 398-410. https://doi.org/10.1111/jse.12672
Silva, F., Coward, F., Davies, K., Elliott, S., Jenkins, E., Newton, A. C., Riris, P., Vander Linden, M., Bates, J., Cantarello, E., Contreras, D. A., Crabtree, S. A., Crema, E. R., Edwards, M., Filatova, T., Fitzhugh, B., Fluck, H., Freeman, J., Klein Goldewijk, K. ... Williams, A. (2022). Developing Transdisciplinary Approaches to Sustainability Challenges: The Need to Model Socio-Environmental Systems in the Longue Durée. Sustainability, 14(16), Article 10234. https://doi.org/10.3390/su141610234
Crossley, J. L., Lawrence, T., Tull, M., Elsey, R. M., Wang, T. & Crossley, D. A. (2022). Developmental oxygen preadapts ventricular function of juvenile American alligators, Alligator mississippiensis. American journal of physiology. Regulatory, integrative and comparative physiology, 323(5), R739-R748. https://doi.org/10.1152/ajpregu.00059.2022
Estes, E. R., Berti, D., Findlay, A. J., Hochella, M. F., Shaw, T. J., Yücel, M., De Carlo, E. H. & Luther, G. W. (2022). Differential Behavior of Metal Sulfides in Hydrothermal Plumes and Diffuse Flows. ACS Earth and Space Chemistry, 6(6), 1429-1442. https://doi.org/10.1021/acsearthspacechem.1c00377
Flensburg, S. B., Garm, A. L. & Funch, P. (2022). Diurnal rhythms and light regulated behaviour in the demosponge Tethya wilhelma. Poster session presented at 11th World Sponge Conference, Leiden, Netherlands.
Wei, F., Wang, S., Fu, B., Wang, L., Zhang, W., Wang, L., Pan, N. & Fensholt, R. (2022). Divergent trends of ecosystem-scale photosynthetic efficiency between arid and humid lands across the globe. Global Ecology and Biogeography, 31(9), 1824-1837. https://doi.org/10.1111/geb.13561
Fashing, P. J., Nguyen, N., Demissew, S., Gizaw, A., Atickem, A., Mekonnen, A., Nurmi, N. O., Kerby, J. T. & Stenseth, N. C. (2022). Ecology, evolution, and conservation of Ethiopia’s biodiversity. Proceedings of the National Academy of Sciences (PNAS), 119(50), Article e2206635119. https://doi.org/10.1073/pnas.2206635119
Colon, C. P., Botton, M. L., Funch, P., Hoffgaard, E. E., Mandeep, K. & Mansfield, K. (2022). Ecology of Juvenile American Horseshoe Crabs (Limulus polyphemus) at Plumb Beach, Jamaica Bay, New York. In International Horseshoe Crab Conservation and Research Efforts: 2007- 2020: Conservation of Horseshoe Crabs Species Globally (pp. 669-690). Springer. https://doi.org/10.1007/978-3-030-82315-3_40
Aguilar, L., Pérez, L. M., Gallegos, Á., Fores, E., Arias, C. A., Bosch, C., Verdum, M., Jove, P., de Pablo, J. & Morató, J. (2022). Effect of aeration on nitrogen removal-associated microbial community in an innovative vertical cork-based constructed wetland for winery wastewater treatment. Ecological Engineering, 185, Article 106781. https://doi.org/10.1016/j.ecoleng.2022.106781
Baden, S., Fredriksen, S., Christie, H., Eriander, L., Gustafsson, C., Holmer, M., Olesen, B., Thormar, J. & Boström, C. (2022). Effects of depth and overgrowth of ephemeral macroalgae on a remote subtidal NE Atlantic eelgrass (Zostera marina) community. Marine Pollution Bulletin, 177, Article 113497. https://doi.org/10.1016/j.marpolbul.2022.113497