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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Hansen, K. A., Miltersen, P. B. & Vinay, V. (2003). Circuits on Cylinders. In Fundamentals of Computation Theory (pp. 171-182). Springer. https://doi.org/10.1007/978-3-540-45077-1_17
Hansen, K. M. (2003). Activity-Centred Tool Integration: Using Type-Based Publish/Subscribe for Peer-to-Peer Tool Integration. In A. Schürr & H. Dörr (Eds.), Proceedings of TIS 2003 Workshop on Tool Integration in System Development (pp. 11-16). Association for Computing Machinery.
Hansen, K. M. (2001). Fluid Interfaces: Supporting Specific, General, and Minimal Interaction. In O. W. Bertelsen (Ed.), Proceedings of The First Danish Human-Computer Interaction Research Symposium (pp. 25-26). Aarhus Universitet.
Hansen, K. M. (2004). Thoth - A Publish/Subscribe Architecture for Peer-to-Peer Tool Integration. International Journal on Software Tools for Technology Transfer, 6(3), 219-230. https://doi.org/10.1007/s10009-004-0156-7
Hansen, K. M. & Christensen, H. B. (2004). Component Reengineering Workshops: A Low-Cost Approach for Assessing Specific Reengineering Costs Across Product Lines. In Proceedings of the 8th European Conference on Software Maintenance and Reengineering 2004 (pp. 154-162). IEEE Computer Society Press. https://doi.org/10.1109/CSMR.2004.1281416
Hansen, K. M., MacIntyre, B., Mynatt, E. D., Tullio, J. & Voida, S. (2001). Hypermedia in the Kimura System: Using Spacial, Temporal and Navigational Relationships to Support Multitasking and Background Awareness. In Proceedings of the twelfth ACM Conference on Hypertext and Hypermedia (Vol. Posters). ACM Press New York, NY, USA.
Hansen, K. M. & Ratzer, A. V. (2002). Tool Support for Collaborative Teaching and Learning of Object-Oriented Modelling. In Proceedings of the 7th annual conference on Innovation and technology in computer science education (pp. 146-150). Association for Computing Machinery. https://doi.org/10.1145/544414.544458
Hansen, T. R. (2004). Socio-Technical Experiments - A New Approach on the Design Process. Electronic Colloquium on Computational Complexity, (CfPC 2004-PP-57).
Hein, J., Pedersen, C. N. S. & Jensen, J. L. (2002). Recursions for Statistical Multiple Alignment. Proceedings of the National Academy of Sciences (PNAS), 100(25), 14960-14965.
Iversen, J. & Mosses, P. D. (Ed.) (2002). Type Inference for the New Action Notation. Paper presented at International Workshop on Action Semantics (AS 2002), København, Denmark.
Iversen, J. & Mosses, P. D. (2004). Constructive Action Semantics for Core ML. BRICS Report Series, (RS-04-37).
Iversen, O. S., Kanstrup, A. M. & Petersen, M. G. (2004). A Visit to the 'New Utopia': Revitalizing Democracy, Emancipation and Quality in Co-Operative Design. In ACM International Conference Proceeding Series: Proceedings of the third Nordic conference on Human-computer interaction (Vol. 82, pp. 171-179). Association for Computing Machinery. https://doi.org/10.1145/1028014.1028040
Jagota, A., Lyngsø, R. B., Pedersen, C. N. S., Gascuel, O. (Ed.) & Moret, B. M. E. (Ed.) (2001). Comparing Hidden Markov Model and a Stochastic Context-Free Grammer. In Proceedings of the First International Workshop on Algorithms in Bioinformatics (2149 of Lecture Notes in Computer Science ed., Vol. Volume 2149/2001, pp. 69-94). Springer.
Jensen, M. & Søgaard, M. (2004). Refocusing the Contextual Turn: The Forgotten Construction of Meaning at the Interface. In Ikke angivet (pp. 185-188). Association for Computing Machinery.
Jurdzinski, M., Nielsen, M. & Srba, J. (2003). Undecidability of Domino Games and Hhp-Bisimilarity. Information and Computation, 184(2), 343-368. https://doi.org/10.1016/S0890-5401(03)00064-6
Jørgensen, J. B. & Moldt, D. (Ed.) (2004). CPN Models as Enhancements to a Traditional Software Specification for an Elevator Controller. In Ikke angivet (PB-571 of Daimi Reports ed., pp. 99-116). Aarhus Universitet.
Jørgensen, J. B., Aalst, W. M. P. V. D. (Ed.) & Best, E. (Ed.) (2003). Coloured Petri Nets in Development of a Pervasive Health Care System. In Ikke angivet (2679 of Lecture Notes in Computer Science ed., Vol. 2679/2003, pp. 256-275). Springer.
Jørgensen, J. B. & Jensen, K. (Ed.) (2002). Coloured Petri Nets in UML-Based Software Development: Designing Middleware for Pervasive Healthcare. In Ikke angivet (DAIMI PB-560 ed., pp. 61-80). Department of Computer Science, University of Aarhus.
Jørgensen, J. B., Bossen, C., Benyon, D. (Ed.), Moody, P. (Ed.), Gruen, D. (Ed.) & McAra-McWilliam, I. (Ed.) (2004). Context-descriptive Prototypes and Their Application to Medicine Administration. In Ikke angivet (pp. 297-306). Society for Industrial and Applied Mathematics.
Jørgensen, J. B., Bossen, C., Giese, H. (Ed.) & Kruger, I. (Ed.) (2004). Executable Use Cases as Links Between Application Domain Requirements and Machine Specifications. In Proceedings of the 26th International Conference on Software Engineering: 3rd Workshop on Scenarios and State Machines: Models, Algorithms, and Tools IEEE.
Jørgensen, J. B., Bossen, C. & Wieringa, R. (Ed.) (2003). Requirements Engineering for a Pervasive Health Care System. In Ikke angivet (pp. 55-64). IEEE.
Jørgensen, J. B., Christensen, S., Jezequel, J.-M. (Ed.), Hussmann, H. (Ed.) & Cook, S. (Ed.) (2002). Executable Design Models for a Pervasive Healthcare Middleware System. In Lecture Notes In Computer Science: 5th International Conference on The Unified Modeling Language (Vol. 2460, pp. 140-149). Springer.
Jørgensen, J. B., Christensen, S., Desel, J. (Ed.), Reisig, W. (Ed.) & Rozenberg, G. (Ed.) (2004). Teaching Coloured Petri Nets: Examples of Courses and Lessons Learned. In Proceedings of Advances Course on Petri Nets (Eichstatt) (3098 i Lecture Notes in Computer Science ed., pp. 402-412). Springer.
Jørgensen, J. B., Christensen, S., Tuovinen, A., Xu, J., Steffen, B. (Ed.) & Margaria, T. (Ed.) (2004). Estimation of Memory Usage of Mobile Phone Software Using UML and Coloured Petri Nets. Paper presented at 1st International Symposium on Leveraging Applications of Formal Methods (ISOLA 2004), Paphos, Cyprus.
Kaptelinin, V., Nardi, B., Bødker, S., Carroll, J., Hollan, J., Hutchins, E. & Winograd, T. (2003). Post-cognitivist HCI: second-wave theories. In G. Cockton & P. Korhonen (Eds.), Ikke angivet (pp. 692-693). Association for Computing Machinery. https://doi.org/10.1145/765891.765933
Kejser, T. & Grønbæk, K. (2003). The Gaia Framework: Version Support In Web Based Open Hypermedia. In P. Isaías & N. Karmakar (Eds.), Proceedings of the IADIS International Conference on WWW/Internet 2003 (pp. 314-325). International Association for Development, IADIS.
Kirchner, H. & Mosses, P. D. (2001). Algebraic Specifications, Higher-order Types and Set-theoretic Models. Journal of Logic and Computation, 11(3), 453-481.
Klarlund, N. & Møller, A. (2001). MONA Version 1.4 User Manual. BRICS Notes Series, (NS-01-1).
Klarlund, N., Møller, A. & Schwartzbach, M. I. (2002). MONA Implementation Secrets. International Journal of Foundations of Computer Science, 13(4), 571-586. https://doi.org/10.1142/S012905410200128X
Klarlund, N., Møller, A. & Schwartzbach, M. I. (2002). The DSD Schema Language. Automated Software Engineering, 9(3), 285-319. https://doi.org/10.1023/A:1016376608070
Kohlenbach, U. & Lambov, B. (2003). Bounds on Iterations of Asymptotically Quasi-Nonexpansive Mappings. BRICS Report Series, (RS-03-51).
Kohlenbach, U., Lambov, B., Falset, J. (Ed.), Fulster, E. (Ed.) & Sims, B. (Ed.) (2004). Bounds on Iterations of Asymptotically Quasi-non-expansive Mappings. In International Conference on Fixed Point Theory and Applications, Valencia 2003 (pp. 143-172). Yokohama Publishers.
Korhonen, I. & Bardram, J. E. (2004). Introduction to this special issue on Pervasive Healthcare. IEEE Transactions on Information Technology in Biomedicine, 8(3), 229-234.
Krieg-Brückner, B., Mosses, P. D. & Mosses, P. D. (Ed.) (2004). Casl Summary. In Casl Reference Manual, The Complete Documentation of the Common Algebraic Specification Language (2960 i Lecture Notes in Computer Science ed., pp. 1-69). Springer.
Krieg-Brückner, B., Mosses, P. D. & Mosses, P. D. (Ed.) (2004). Casl Syntax. In Casl Reference Manual, The Complete Documentation of the Common Algebraic Specification Language (2960 i Lecture Notes in Computer Science ed., pp. 71-112). Springer.
Krink, T., van Kooten Niekerk, K. (Ed.) & Buhl, H. (Ed.) (2004). Complexity and the Computing Age: Can Computers Really Help to Understand Complex Phenomena in Nature? In The Significance of Complexity (pp. 47-73). Ashgate publishing.
Krink, T., Filipic, B., Fogel, G. B. & Thomsen, R. (2004). Noisy Optimization Problems - A Particular Challenge for Differential Evolution? In Ikke angivet (pp. 332-339). IEEE Press.
Krink, T., Løvbjerg, M., Guervós, J. J. M. (Ed.), Adamidis, P. (Ed.), Beyer, H.-G. (Ed.), Fernández-Villacañas Martin, J.-L. (Ed.) & Schwefel, H.-P. (Ed.) (2002). The LifeCycle model: Combining Particle Swarm Optimisation, Genetic Algorithms and HillClimbers. In Lecture Notes in Computer Science: Parallel Problem Solving from Nature --- PPSN VII (Vol. 2439, pp. 621-630). Springer.
Krink, T. & Paterlini, S. (2006). Differential Evolution and Particle Swarm Optimization for Partitional Clustering. Computational Statistics & Data Analysis, 50/5(446), 27.
Krink, T. & Thomsen, R. (2001). Self-Organized Criticality and Mass Extinction in Evolutionary Algorithms. In Proceedings of the Third Congress on Evolutionary Computation (CEC 2001).: Vol. 2 (Vol. 2, pp. 1155-1161). IEEE.
Krink, T., Ursem, R. K., Filipic, B., Spector, L. (Ed.), Goodman, E. D. (Ed.), Wu, A. (Ed.), Langdon, W. B. (Ed.), Voigt, H. (Ed.), Gen, M. (Ed.), Sen, S. (Ed.), Dorio, M. (Ed.), Pezeshk, S. (Ed.), Garzon, M. H. (Ed.) & Burke, E. (Ed.) (2001). Evolutionary Algorithms in Control Optimization: The Greenhouse Problem. In GECCO 2001: Proceedings of the Genetic and Evolutionary Computation Conference (pp. 440-447). Morgan Kaufmann.
Krink, T., Vesterstrøm, J. S., Riget, J., Fogel, D. B. (Ed.), Yao, X. (Ed.), Greenwood, G. (Ed.), Iba, H. (Ed.), Marrow, P. (Ed.) & Shackleton, M. (Ed.) (2002). Particle Swarm Optimisation with Spatial Particle Extension. In Proceedings of the Evolutionary Computation on 2002. CEC '02.: Proceedings of the 2002 Congress (Vol. 02, pp. 1474-1479). IEEE.
Kristensen, J. F., Eriksen, M. A., Iversen, O. S., Kanstrup, A. M., Nielsen, C. & Petersen, M. G. (2003). Young People In Old Cars - Challenges For Cooperative Design. Paper presented at Information systems research seminar in Scandinavia (IRIS 26) 9-12 August 2003, Haikko Manor, Finland.
Kristensen, L. M. (2004). Using Coloured Petri Nets in the Development of Protocols for Ad-Hoc Networking. In Proceedings of 3rd International Workshop on Integration and Specification Techniques for Applications in Engineering (pp. 12-13)

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Gimenez-Grau, P., Camarero, L., Palacín-Lizarbe, C., Sala-Faig, M., Zufiaurre, A., Pla-Rabes, S., Felip, M. & Catalan, J. (2023). Self-filling enclosures to experimentally assess plankton response to pulse nutrient enrichments. Journal of Plankton Research, 45(2), 266-277. https://doi.org/10.1093/plankt/fbac074
Steininger, F. (2023). Sensing of pH-Dependent Analytes. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Merl, T. (2023). Sensing Soil Processes - Visualizing Ammonia Dynamics and Soil Microenvironments. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Hoeks, S., Huijbregts, M. A. J., Boonman, C. C. F., Faurby, S., Svenning, J.-C., Harfoot, M. B. J. & Santini, L. (2023). Shifts in ecosystem equilibria following trophic rewilding. Diversity and Distributions, 29(12), 1512-1526. https://doi.org/10.1111/ddi.13786
Istenic, D. & Arias, C. A. (2023). Sistemas evaporativos con sauces. In Soluciones basadas en la naturaleza para el tratamiento de aguas residuales (pp. 46-49). IWA Publishing.
Gonzalez-Flo, E., Ortiz, A., A. Arias, C., Díez-Montero, R., Kohlheb, N., Schauser, U. H., García, J. & Gregersen, P. K. S. (2023). Sludge Treatment Wetland for Treating Microalgae Digestate Grown in Agricultural Runoff: A Technical, Economic, and Environmental Assessment. Water, 15(12), Article 2159. https://doi.org/10.3390/w15122159
Alexander, G. J. & Wang, T. (2023). Snake foraging ecology and digestive physiology: Integrative biology and evolving paradigms. In D. Penning (Ed.), Snakes: Morphology, Function, and Ecology (pp. 313-342). Nova Science Publishers. https://doi.org/10.52305/YHUZ3307
Cirtwill, A. R., Kaartinen, R., Rasmussen, C., Redr, D., Wirta, H., Olesen, J. M., Tiusanen, M., Ballantyne, G., Cunnold, H., Stone, G. N., Schmidt, N. M. & Roslin, T. (2023). Stable pollination service in a generalist high Arctic community despite the warming climate. Ecological Monographs, 93(1), Article e1551. https://doi.org/10.1002/ecm.1551
Kettisen, K., Nyblom, M., Smeds, E., Fago, A. & Bülow, L. (2023). Structural and oxidative investigation of a recombinant high-yielding fetal hemoglobin mutant. Frontiers in Molecular Biosciences, 10, Article 1133985. https://doi.org/10.3389/fmolb.2023.1133985
Pearce, E. A., Mazier, F., Normand, S., Fyfe, R., Andrieu, V., Bakels, C., Balwierz, Z., Bińka, K., Boreham, S., Borisova, O. K., Brostrom, A., de Beaulieu, J. L., Gao, C., González-Sampériz, P., Granoszewski, W., Hrynowiecka, A., Kołaczek, P., Kuneš, P., Magri, D. ... Svenning, J. C. (2023). Substantial light woodland and open vegetation characterized the temperate forest biome before Homo sapiens. Science Advances, 9(45), Article eadi9135. https://doi.org/10.1126/sciadv.adi9135
Daussin, A., Vannier, P., Mater, É., Šantl-Temkiv, T., Cockell, C. & Marteinsson, V. Þ. (2023). Survival of Icelandic airborne microbes towards simulated atmospheric stress factors. Extremophiles, 27(2), Article 17. https://doi.org/10.1007/s00792-023-01302-6
Tougaard, J., Beedholm, K. & Madsen, P. P. T. (2023). Temporary Threshold Shift in Porpoise Hearing: Effect of Experimental Protocol. In A. N. Popper, J. A. Sisneros, A. Hawkins & F. Thomsen (Eds.), The Effects of Noise on Aquatic Life: Principles and Practical Considerations Springer. https://doi.org/10.1007/978-3-031-10417-6_166-1
Aalkjær, C. & Wang, T. (2023). The cardiovascular challenges in giraffes. Journal of Muscle Research and Cell Motility, 44(2), 53-60. https://doi.org/10.1007/s10974-022-09626-0
Šímová, I., Ordonez, A. & Storch, D. (2023). The dynamics of the diversity–energy relationship during the last 21,000 years. Global Ecology and Biogeography, 32(5), 707-718. https://doi.org/10.1111/geb.13649
Schlafer, S., K. Johnsen, K., Jørgensen, M.-R., Kjærbølling, I., Schramm, A. & Meyer, R. L. (2023). The effect of an enzyme-containing lozenge on dental biofilm accumulation: A clinical pilot study. Abstract from ORCA: 70th Congress of the European Organization for Caries Research, Egmond aan Zee, Netherlands.
Ma, H., Crowther, T. W., Mo, L., Maynard, D. S., Renner, S. S., van den Hoogen, J., Zou, Y., Liang, J., de-Miguel, S., Nabuurs, G. J., Reich, P. B., Niinemets, Ü., Abegg, M., Adou Yao, Y. C., Alberti, G., Almeyda Zambrano, A. M., Alvarado, B. V., Alvarez-Dávila, E., Alvarez-Loayza, P. ... Zohner, C. M. (2023). The global biogeography of tree leaf form and habit. Nature Plants, 9(11), 1795–1809. https://doi.org/10.1038/s41477-023-01543-5
Sands, C. J., Zwerschke, N., Bax, N., Barnes, D. K. A., Moreau, C., Downey, R., Moreno, B., Held, C. & Paulsen, M. (2023). The Growing Potential of Antarctic Blue Carbon. Oceanography, 36(1), 16-17. https://doi.org/10.5670/oceanog.2023.s1.5
Kristensen, J. A. & Breuning-Madsen, H. (2023). The landscape and soil fertility around the Jelling Monuments. In A. Pedersen (Ed.), Jelling – Monuments and Landscape, Publications from the National Museum: Studies in Archaeology & History (Vol. Vol. 20:4 1-2).
Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R. ... Farh, K. K. H. (2023). The landscape of tolerated genetic variation in humans and primates. Science (New York, N.Y.), 380(6648), Article abn8197. https://doi.org/10.1126/science.abn8197
Schiøtt, S. (2023). The marine ecosystem of Ilulissat Icefjord, Greenland. [PhD dissertation, Aarhus University].
Hoehler, T. M., Mankel, D. J., Girguis, P. R., McCollom, T. M., Kiang, N. Y. & Jørgensen, B. B. (2023). The metabolic rate of the biosphere and its components. Proceedings of the National Academy of Sciences (PNAS), 120(25), Article e2303764120. https://doi.org/10.1073/pnas.2303764120
Bellvert, A., Adrián-Serrano, S., Macías-Hernández, N., Toft, S., Kaliontzopoulou, A. & Arnedo, M. A. (2023). The Non-Dereliction in Evolution: Trophic Specialisation Drives Convergence in the Radiation of Red Devil Spiders (Araneae: Dysderidae) in the Canary Islands. Systematic Biology, 72(5), 998-1012. https://doi.org/10.1093/sysbio/syad046
Hoegh-Guldberg, O. (Ed.), Northrop, E. (Ed.), Ashford, O. S., Chopin, T., Cross, J., Quesada, C. M. D., Gaines, S., Geirs, T., Gösling, S., Haugan, P., Hemer, M., Howard, J., Huang, C., Humpe, A., Kitch, G., Koweek, D., Krause-Jensen, D., Lovelock, C. E., Matthews, K. ... Tyedmers, P. (2023). The ocean as a solution to climate change: Updated opportunities for action. World Resources Institute. https://doi.org/10.1007/978-3-031-16277-0_17
Marghoub, A., Kéver, L., Williams, C. J. A., Abzhanov, A., Vickaryous, M., Herrel, A., Evans, S. E. & Moazen, M. (2023). The role of cranial osteoderms on the mechanics of the skull in scincid lizards. Anatomical Record, 306(10), 2415-2424. https://doi.org/10.1002/ar.25168
Mantoani, M. C., Martins, J. A., Martins, L. D., Carotenuto, F., Šantl-Temkiv, T., Morris, C. E., Rodrigues, F. & Gonçalves, F. L. T. (2023). Thirty-Five Years of Aerosol–PBAP in situ Research in Brazil: The Need to Think outside the Amazonian Box. Climate, 11(1), Article 17. https://doi.org/10.3390/cli11010017
Zhou, P., Ye, S., Xie, L., Krauss, K. W., Pei, L., Chapman, S. K., Brix, H., Laws, E. A., Yuan, H., Yang, S., Ding, X. & Xie, S. (2023). Tidal restriction likely has greater impact on the carbon sink of coastal wetland than climate warming and invasive plant. Plant and Soil, 492(1-2), 135-156. https://doi.org/10.1007/s11104-023-06160-x
Martín-Hernanz, S., Nogales, M., Valente, L., Fernández-Mazuecos, M., Pomeda-Gutiérrez, F., Cano, E., Marrero, P., Olesen, J. M., Heleno, R. & Vargas, P. (2023). Time-calibrated phylogenies reveal mediterranean and pre-mediterranean origin of the thermophilous vegetation of the Canary Islands. Annals of Botany, 131(4), 667-684. https://doi.org/10.1093/aob/mcac160