Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Shaik, I., Mayer-Eichberger, V., van de Pol, J. & Saffidine, A. (2024). Implicit QBF Encodings for Positional Games. In M. Hartisch, C.-H. Hsueh & J. Schaeffer (Eds.), Advances in Computer Games - 18th International Conference, ACG 2023, Revised Selected Papers (pp. 133-145). Springer. https://doi.org/10.1007/978-3-031-54968-7_12

Zhong, Z. & Mottin, D. (2024). Exploring Graph Structure Comprehension Ability of Multimodal Large Language Models: Case Studies.

Zhong, Z., Larsen, S. S.-Y., Guo, H., Tang, T., Zhou, K. & Mottin, D. (2025). Automatic Annotation Augmentation Boosts Translation between Molecules and Natural Language.

Nkansah, D. T. (2026). Nakayama functors on proper abelian subcategories. Publicacions Matematiques, 70(1), 27-53. https://doi.org/10.5565/PUBLMAT7012602

Nkansah, D. T. (2025). Homological algebra in subcategories: Nakayama functors, rank functions and differential modules. [PhD dissertation, Aarhus University].

Hansen, A. B., Nielsen, J. B. & Simkin, M. (2025). OCash: Fully Anonymous Payments Between Blockchain Light Clients. In T. Jager & J. Pan (Eds.), Public-Key Cryptography – PKC 2025 - 28th IACR International Conference on Practice and Theory of Public-Key Cryptography, Proceedings (pp. 169-202). Springer Science+Business Media. https://doi.org/10.1007/978-3-031-91832-2_6

Nielsen, M. B., Ong, J. M. J., Hatt, E. J., Davies, G. R., Chaplin, W. J., Hookway, G. T., Stokholm, A., Scutt, O. J., Lund, M. N. & García, R. A. (2025). Asteroseismology with PBjam 2.0: Measuring Dipole Mode Frequencies in Coupling Regimes from Main-sequence to Low-luminosity Red Giant Stars. Astronomical Journal, 169(6), Article 322. https://doi.org/10.3847/1538-3881/adcb37

Zaalberg, R. M., Andersen, L. B., Hansen, L. S., Gebreyesus, G., Henryon, M., Jensen, K. & Nielsen, H. M. (2025). Short communication: Substantial heritability of larval size in the black soldier fly reveals potential for selective breeding. ANIMAL, 19(6), Article 101534. https://doi.org/10.1016/j.animal.2025.101534

Sandgaard, A. D. & Jespersen, S. (2025). Predicting Mesoscopic Larmor Frequency Shifts in White Matter with Diffusion MRI - A Monte-Carlo Study in Axonal Phantoms. Abstract from 2025 ISMRM & ISMRT Annual Meeting & Exhibition, Honolulu, United States. https://submissions.mirasmart.com/ISMRM2025/Itinerary/ConferenceMatrixEventDetail.aspx?ses=D-107

Sandgaard, A. D. & Jespersen, S. (2025). Rotation-Free Estimation of Anisotropic Transverse Relaxation & Larmor Frequency with Diffusion MRI: A Monte Carlo Study in Axonal Phantoms. Abstract from 2025 ISMRM & ISMRT Annual Meeting & Exhibition, Honolulu, United States. https://submissions.mirasmart.com/ISMRM2025/Itinerary/ConferenceMatrixEventDetail.aspx?ses=D-107

Sandgaard, A. D., Jespersen, S., Alstrup, A. K. O., Möller, H., Pampel, A., Wallstein, N., Mildner, T. & Jäger, C. (2025). Predicting Mesoscopic Larmor Frequency Shifts with Diffusion MRI in Ex Vivo Pig Optic Nerve. https://submissions.mirasmart.com/ISMRM2025/Itinerary/ConferenceMatrixEventDetail.aspx?ses=O-35

Thomsen, M. E., Bennike, T. B., Christiansen, G., Emmersen, J., Laursen, N. S., Zarantonello, A., Andersen, G. R., Liu, L., Dueholm, M. K. D., Opstrup, K. V., Stensballe, A. & Birkelund, S. (2025). Differences in complement activation of serum-resistant and serum-sensitive Klebsiella pneumoniae isolates. Molecular immunology, 183, 274-285. https://doi.org/10.1016/j.molimm.2025.05.014

Nielsen, K. H. (2025). Bibelsk nedslag. Weekendavisen, Sektion 4 (Ideer), 5.

Nielsen, K. H. (2025). Genetikkens grønært. Weekendavisen, Sektion 4 (Ideer), 5.

Wray, K. B. (2026). Kuhn’s influence and legacy. In F. Padovani & A. T. Tuboly (Eds.), Routledge Handbook of the History of Philosophy of Science after Kant (pp. 241-250). Routledge. https://doi.org/10.4324/9781003381051-25

Assar, S., Kristensen, M. F., Del Rey, Y. C., Lund, M. B., Raittio, E. J., Schramm, A., Meyer, R. L. & Schlafer, S. (2025). Microscale analyses of the effect of arginine on oral biofilms. Journal of Dentistry, 160, Article 105863. https://doi.org/10.1016/j.jdent.2025.105863

Golletz, P., Jensen, S. D., Collignon, M., Hall, C., Khamas, A. B., Møllebjerg, A., Schlafer, S., Meyer, R. L. & Tykwinska, K. (2025). Coaggregation of oral pathogens by postbiotic lactobacilli. Journal of Oral Microbiology, 17(1), Article 2508483. https://doi.org/10.1080/20002297.2025.2508483

Wray, K. B. (2026). Einflüsse auf Kuhn und das Verhältnis von Wissenschaftsgeschichte und Wissenshaftsphilosophie. In M. Seidel (Ed.), Thomas Kuhns Die Struktur wissenschaftlicher Revolutionen (pp. 15-28). De Gruyter. https://doi.org/10.1515/9783111243924-003

Qaiser, Z., Khalid, N., Mahmood, A., Lee, S. Y., Rizvi, Z. F., Irshad, M. K., Ejaz, U. & Aqeel, M. (2025). Tissue infiltration of polyethylene, polypropylene, and polystyrene microplastics in Solanum tuberosum L. influences plant growth and yield. Current Plant Biology, 43, Article 100496. https://doi.org/10.1016/j.cpb.2025.100496

Seeley, M. M., Wiebe, B. C., Gehring, C. A., Hultine, K. R., Posch, B. C., Cooper, H. F., Schaefer, E. A., Bock, B. M., Abraham, A. J., Moran, M. E., Keith, A., Allan, G. J., Scull, M., Whitham, T. G., Martin, R. M., Asner, G. P. & Doughty, C. E. (2025). Remote sensing reveals inter- and intraspecific variation in riparian cottonwood (Populus spp) response to drought. Journal of Ecology, 113(7), 1760-1779. https://doi.org/10.1111/1365-2745.70061

Bhargavan, K., Buyse, M., Franceschino, L., Hansen, L. L., Kiefer, F., Schneider-Bensch, J. & Spitters, B. (2025). hax: Verifying Security-Critical Rust Software Using Multiple Provers. In J. Protzenko & A. Raad (Eds.), Verified Software. Theories, Tools and Experiments - 16th International Conference, VSTTE 2024, Revised Selected Papers (pp. 96-119). Springer. https://doi.org/10.1007/978-3-031-86695-1_7

Alcántara, J. M., Verdú, M., Garrido, J. L., Montesinos-Navarro, A., Aizen, M. A., Alifriqui, M., Allen, D., Al-Namazi, A. A., Armas, C., Bastida, J. M., Bellido, T., Paterno, G. B., Briceño, H., Camargo de Oliveira, R. A., Campoy, J. G., Chaieb, G., Chu, C., Constantinou, E., Delalandre, L. ... Zamora, R. (2025). Key concepts and a world-wide look at plant recruitment networks. Biological Reviews, 100(3), 1127-1151. https://doi.org/10.1111/brv.13177

Daniel Opfermann, M., Bøgelund Søndergård, M., Vase Bech, L., Nielsen, C. B., Mahía, A., Brinck Holt, C., Wang, T., Bisgaard Olesen, S., Frisch, K., Appel Østergaard, J., Britz, D., Lykke Nielsen, K., Galligan, J. J., Poulsen, T. B., Hansen, J. & Johannsen, M. (2025). Reactivity-based metabolomics reveal cysteine has glyoxalase 1-like and glyoxalase 2-like activities. Nature Chemical Biology, 21, 1397-1407. Article 2004. https://doi.org/10.1038/s41589-025-01909-0

Henches, L., Kim, J., Yang, Z., Rubinacci, S., Pires, G., Albiñana, C., Boetto, C., Julienne, H., Frouin, A., Auvergne, A., Suzuki, Y., Djebali, S., Delaneau, O., Ganna, A., Vilhjálmsson, B., Privé, F. & Aschard, H. (2025). Polygenic risk score prediction accuracy convergence. Human Genetics and Genomics Advances, 6(3), Article 100457. https://doi.org/10.1016/j.xhgg.2025.100457

Einarsson, H. B., Mortensen, A. F., Nielsen, M. S., Chen, M., Nielsen, S. R., Kraft, D. C. E., Jensen, J., Bjerre, M., Nygaard, J. V., Bünger, C. E. & Vorup-Jensen, T. (2025). Osteoclast-like multinucleated giant cells reinforce polycaprolactone grafts. Frontiers in Immunology, 16, Article 1572238. https://doi.org/10.3389/fimmu.2025.1572238

the IS690 collaboration (2025). Exploring the excited structure of ¹¹Li through (t,p) reactions at the upgraded SEC Device. EPJ Web of Conferences, 324, Article 00033. https://doi.org/10.1051/epjconf/202532400033

Rodriguez-Palomo, A., Vibe, P. A. S., Vogel Jørgensen, M. R. & Birkedal, H. (2025). Biomineral displays systematic spatially varying crystallographic properties in fibrolamellar bone as revealed by position resolved X-ray diffraction. Faraday Discussions, 261, 116-131. https://doi.org/10.1039/d5fd00030k

Slumstrup, L., Thrower, J. D., Schrauwen, J. G. M., Lamberts, T., Ingman, E. R., Laurinavicius, D., DeVine, J., Terwisscha van Scheltinga, J., Santos, J. C., Noble, J. A., Wenzel, G., McCoustra, M. R. S., Brown, W. A., Linnartz, H., Hornekær, L., Cuppen, H. M., Redlich, B. & Ioppolo, S. (2025). IR-Induced CO Photodesorption from Pure CO Ice and CO on Amorphous Solid Water. ACS Earth and Space Chemistry, 9(6), 1607-1621. https://doi.org/10.1021/acsearthspacechem.5c00040

Barbaro, G., Pediconi, F. & Tardini, N. (2025). The pluriclosed flow and the Vaisman condition. Mathematische Zeitschrift, 310(4), Article 74. https://doi.org/10.1007/s00209-025-03778-8

Bernard, M., van der Beek, P. A., Pedersen, V. K. & Colleps, C. (2025). Production and Preservation of Elevated Low-Relief Surfaces in Mountainous Landscapes by Pliocene-Quaternary Glaciations. AGU Advances, 6(3), Article e2024AV001610. https://doi.org/10.1029/2024AV001610

Stange, A. D., Zuzic, L., Schiøtt, B. & Berglund, N. A. (2025). Exploring insulin-receptor dynamics: Stability and binding mechanisms. Structure, 33(8), 1425-1435.e2. https://doi.org/10.1016/j.str.2025.04.022

Gothelf, R. V., Lange, C. S. & Madsen, L. B. (2025). High-order harmonic generation in a crystal driven by quantum light. Physical Review A, 111(6), Article 063105. https://doi.org/10.1103/PhysRevA.111.063105

Søkilde, R., Kaadt, E., Kristensen, L. S., Venø, M. T., Kjems, J., Nyengaard, J. R., Nielsen, B. S. & Elfving, B. (2025). Application of microRNA In Situ Hybridization on Long-term Stored Human Formalin-fixed Paraffin-embedded Brain Samples from Psychiatric Patients. Molecular Neurobiology, 62(10), 12736-12746. https://doi.org/10.1007/s12035-025-05077-z

Kosovichev, A. G., Basu, S., Bekki, Y., Buitrago-Casas, J. C., Chatzistergos, T., Chen, R., Christensen-Dalsgaard, J., Donea, A., Fleck, B., Fournier, D., García, R. A., Getling, A. V., Gizon, L., Gough, D. O., Hanasoge, S., Hanson, C. S., Hess Webber, S. A., Hoeksema, J. T., Howe, R. ... Zhao, J. (2025). Structure and Dynamics of the Sun’s Interior Revealed by the Helioseismic and Magnetic Imager. Solar Physics, 300(5), Article 70. https://doi.org/10.1007/s11207-025-02480-6

Mathes, G. H., Pimiento, C., Kiessling, W., Svenning, J. C. & Steinbauer, M. J. (2025). The effect of climate legacies on extinction dynamics: A systematic review. Cambridge Prisms: Extinction, 3, Article e6. https://doi.org/10.1017/ext.2025.2

Song, J., Zajac, M., Haha, M. B. & Skibsted, J. (2025). Impact of Ca/Si and Al/Si ratios on the composition and structure of the alumina-silica gel formed by wet carbonation of synthesized C-S-H in blends with portlandite and ettringite. Cement and Concrete Research, 197, Article 107931. https://doi.org/10.1016/j.cemconres.2025.107931

The GALAH Collaboration (2025). The GALAH survey: Data release 4. Publications of the Astronomical Society of Australia, 42, Article e051. https://doi.org/10.1017/pasa.2025.26

Poulsen, E., Rysgaard, S., Melvad, P. & Melvad, C. (2025). Rugged, low-cost, and lightweight rosette water sampler for ocean profiling and mooring deployment. HardwareX, 22, Article e00661. https://doi.org/10.1016/j.ohx.2025.e00661

Etchart, L., Lecomte, N., Dechaume-Moncharmont, F.-X., Lang, J., Moreau, J., Pagnon, T., Schmidt, N. M., Sittler, B., Bollache, L. & Gilg, O. (2025). Snowmelt and laying date impact the parental care strategy of a high-Arctic shorebird. Scientific Reports, 15(1), Article 19760. https://doi.org/10.1038/s41598-025-02318-y

Tyvanchuk, Y., Lee, S., Babizhetskyy, V., Smetana, V., Mudring, A. V., Dzevenko, M., Jaffal, E. I., Selvaratnam, B. & Oliynyk, A. O. (2025). Materials Informatics Tools to Analyze Crystal Structures: Crystal Structure of the Novel Ternary Indide ErCo₂In. Integrating Materials and Manufacturing Innovation, 14(2), 170-187. Article 101017. https://doi.org/10.1007/s40192-025-00400-x

Koppe, J., Yakimov, A. V., Gioffrè, D., Usteri, M. E., Vosegaard, T., Pintacuda, G., Lesage, A., Pell, A. J., Mitchell, S., Pérez-Ramírez, J. & Copéret, C. (2025). Coordination environments of Pt single-atom catalysts from NMR signatures. Nature, 642(8068), 613-619. https://doi.org/10.1038/s41586-025-09068-x

Zamora-Luria, J. C., McLachlan, P. & Christiansen, A. V. (2025). Assessing the seasonal temperature effects in long-term transient electromagnetic data. Journal of Applied Geophysics, 241, Article 105798. https://doi.org/10.1016/j.jappgeo.2025.105798

Myrup Holst, C., Esperon-Abril, I., Bryske Juhl, F., Jakobsgaard, J. E., Kristiansen, J. B., Vissing, K. & Stevnsner, T. (2026). Effect of prolonged voluntary wheel running on oxidative stress and defence mechanisms in cortex and hippocampus of healthy female rats. Experimental Physiology, 111(2), 449-463. https://doi.org/10.1113/EP092815

Schrauwen, J. G. M., Dijkhuis, T. M., Ioppolo, S., Galimberti, D. R., Redlich, B. & Cuppen, H. M. (2025). Infrared Irradiation of H₂O:CO₂ Ice: A Combined Experimental and Computational Study of the Dissipation of CO₂ Vibrational Excitations. ACS Earth and Space Chemistry, 9(6), 1580-1592. https://doi.org/10.1021/acsearthspacechem.5c00030

Drobniak, A., Mastalerz, M., Jelonek, Z., Jelonek, I., Acda, M. N., Adsul, T., Andolšek, N. M., Animali, L., Ardakani, O. H., Ataide, T., Batbold, D., Bhat, M. Y., Congo, T., Donohoe, B. S., Ehinola, O. A., Flores, D., Fonseca, C., Ghosh, S., Gonçalves, P. ... Ziemianin, K. (2025). Component identification of solid biomass fuels using reflected light microscopy: Interlaboratory study 2. International Journal of Coal Geology, 307, Article 104814. https://doi.org/10.1016/j.coal.2025.104814

Almeida, A. V., Jensen, K. T., Harwood, S. L., Jørgensen, M. H., Nielsen, N. S., Thøgersen, I. B., Enghild, J. J. & Andersen, G. R. (2025). Three cryo-EM structures of CD109 reveal its mechanism of protease inhibition. Cell Reports, 44(6), Article 115787. https://doi.org/10.1016/j.celrep.2025.115787

Ha, Y., Pavlov, S. G., Rabasovic, M. D., Krmpot, A. J., Petrovic, J., Woeste, J., Azih, D. A., Wall, S., Weber, I., Stojanovic, N. & Gensch, M. (2025). Time-Domain Raman Spectroscopy: An Emerging Technique in Space Exploration? Journal of Raman Spectroscopy, 56(9), 916-919. https://doi.org/10.1002/jrs.6848

Afrough, A., Pérez-Mendigorri, M. & Vosegaard, T. (2025). Automated Data Processing Workflows for Non-Expert Users of NMR Facilities. Magnetic Resonance in Chemistry, 63(8), 604-612. https://doi.org/10.1002/mrc.5540

Bara, S., Algora, A., Andel, B., Andreyev, A. N., Antalic, S., Bark, R. A., Borge, M. J. G., Camaiani, A., Cocolios, T. E., Cubiss, J. G., De Witte, H., Fajardo-Zambrano, C. M., Favier, Z., Fraile, L. M., Fynbo, H. O. U., Goriely, S., Grzywacz, R., Heines, M., Ivandikov, F. ... Yue, Z. (2025). New upper limits for β-delayed fission probabilities of ^230,232Fr and ^230,232,234Ac. Physical Review C, 111(6), Article 065803. https://doi.org/10.1103/PhysRevC.111.065803

Zhou, Z. & Sanei, H. (2025). Maceral point counting for dispersed organic matter (DOM). International Journal of Coal Geology, 307, Article 104818. https://doi.org/10.1016/j.coal.2025.104818

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