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Department of Biology

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The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Das, A., Panitz, F., Gregersen, V. R., Bendixen, C. & Holm, L.-E. (2015). Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes. BMC Genomics, 16, 1-12. Article 1043. https://doi.org/10.1186/s12864-015-2249-y

Nielsen, K. H. (2015). Samfundet. Weekendavisen, Ideer, 10.

Boertmann, D., Olsen, K. & Nielsen, R. D. (2015). Geese in Northeast and North Greenland as recorded on aerial surveys in 2008 and 2009. Dansk Ornitologisk Forenings Tidsskrift, 109(4), 206-217.

Schlafer, S. (2015). En rejse ind i dental biofilm. Abstract from Årskursus 2015 - Tandlægeforeningen, København, Denmark.

Jensen, K. H., Knudsen, K. E. B., Callesen, H., Jensen, B. B., Herskin, M. S., Ekstrand, B., Hermansen, J. E., Kongsted, A. G. & Bendixen, C., (2012). Oversigt og status vedrørende igangværende og kommende forskningsprojekter om kastration af pattegrise, No. 965599, 18 p., Oct 15, 2012.

Thyrring, J., Holmstrup, M. & Sejr, M. K. (2015). A lethal cocktail? Effect of pollution and sub-zero temperatures on survival of the blue mussel Mytilus edulis. Poster session presented at ArcticNet Annual Meeting: ASM 2015, Vancouver, BC, Canada.

Holm, T. E., Haugaard, L., Madsen, J. & Clausen, K. (2015). Anskydning af vildt: Undersøgelser 2013-2015. Teknisk rapport fra DCE - Nationalt Center for Miljø og Energi No. 70

Podolskij, M., Veliyev, B. & Yoshida, N. (2015). Edgeworth expansion for the pre-averaging estimator. Institut for Økonomi, Aarhus Universitet. CREATES Research Paper No. 2015-60

Barfod, G., Larsen, J. M., Lichtenberger, A. & Raja, R. (2015). Revealing text in a complexly rolled silver scroll from Jerash with computed tomography and advanced imaging software. Scientific Reports, 5, Article 17765. https://doi.org/10.1038/srep17765

LeBeuf, R., Thorn, R. G., Boertmann, D. & Voitk, A. (2015). Hygrocybe jackmanni Lebeuf, Thorn, Boertm. & Voitk, sp. nov. Persoonia, 35, 304-305.

Boertmann, D. (2015). ResearchGate – en slags ’facebook’ for forskere. Dansk Ornitologisk Forenings Tidsskrift, 109(4), 158.

Bienfait, A., Pla, J. J., Kubo, Y., Stern, M., Zhou, X., Lo, C. C., Weis, C. D., Schenkel, T., Thewalt, M. L. W., Vion, D., Esteve, D., Julsgaard, B., Moelmer, K., Morton, J. J. L. & Bertet, P. (2016). Reaching the quantum limit of sensitivity in electron spin resonance. Nature Nanotechnology, 11, 253–257 . https://doi.org/10.1038/nnano.2015.282

Jacobsen, A. R. & Schriver, M. E. (2014). How seaweed got to cover the dome in Denmark: Audio-visual project turns the view upside down. Planetarian, 43(2), 20.

Dige, I., Nyvad, B., Bælum, V. & Schlafer, S. (2015). Ratiometric Imaging of Extracellular pH in Dental Biofilms Using C-SNARF-4. Abstract from IADR, Boston, United States.

Gatchell, M., Stockett, M. H., de Ruette, N., Chen, T., Giacomozzi, L., Nascimento, R. F., Wolf, M., Anderson, E. K., Delaunay, R., Vizcaino, V., Rousseau, P., Adoui, L., Huber, B. A., Schmidt, H. T., Zettergren, H. & Cederquist, H. (2015). Failure of hydrogenation in protecting polycyclic aromatic hydrocarbons from fragmentation. Physical Review A, 92(5), Article 050702(R). https://doi.org/10.1103/PhysRevA.92.050702

Makarov, I. S., Kuwahara, T., Jusseau, X., Ryu, I., Lindhardt, A. T. & Skrydstrup, T. (2015). Palladium-Catalyzed Carbonylative Couplings of Vinylogous Enolates: Application to Statin Structures. Journal of the American Chemical Society, 137(44), 14043-14046. https://doi.org/10.1021/jacs.5b09342

Schattling, P., Thingholm, B. & Stadler, B. (2015). Enhanced Diffusion of Glucose-Fueled Janus Particles. Chemistry of Materials, 27(21), 7412-7418. https://doi.org/10.1021/acs.chemmater.5b03303

Kilburn, T. R., Eriksen, H.-L. F., Underbjerg, M., Thorsen, P., Mortensen, E. L., Landrø, N. I., Bakketeig, L. S., Grove, J., Sværke, C. & Kesmodel, U. S. (2015). Low to Moderate Average Alcohol Consumption and Binge Drinking in Early Pregnancy: Effects on Choice Reaction Time and Information Processing Time in Five-Year-Old Children. PLoS One, 10(9), e0138611. https://doi.org/10.1371/journal.pone.0138611

Cooil, S. P., Wells, J. W., Hu, D., Niu, Y. R., Zakharov, A. A., Bianchi, M. & Evans, D. A. (2015). Controlling the growth of epitaxial graphene on metalized diamond (111) surface. Applied Physics Letters, 107(18), Article 181603. https://doi.org/10.1063/1.4935073

Kumar, R. S., Svane, A., Vaitheeswaran, G., Kanchana, V., Antonio, D., Cornelius, A. L., Bauer, E. D., Xiao, Y. & Chow, P. (2015). Effect of Pressure on Valence and Structural Properties of YbFe2Ge2 Heavy Fermion Compound-A Combined Inelastic X-ray Spectroscopy, X-ray Diffraction, and Theoretical Investigation. Inorganic Chemistry, 54(21), 10250-10255. https://doi.org/10.1021/acs.inorgchem.5b01534

Smerup, M. H., Damkjær, M., Brøndum, E., Baandrup, U. T., Kristiansen, S. B., Nygaard, H., Aalkjær, C., Sauer, C., Buchanan, R., Bertelsen, M. F., Østergaard, K. H., Grøndahl, C., Candy, G., Hasenkam, J. M., Secher, N. H., Bie, P. & Wang, T. (2016). The thick left ventricular wall of the giraffe heart normalises wall tension, but limits stroke volume and cardiac output. Journal of Experimental Biology, 49(3), 457-463. https://doi.org/10.1242/jeb.132753

Andersen, J., Ladefoged, L. K., Wang, D., Kristensen, T. N. B., Bang-Andersen, B., Kristensen, A. S., Schiøtt, B. & Stromgaard, K. (2015). Binding of the Multimodal Antidepressant Drug Vortioxetine to the Human Serotonin Transporter. ACS Chemical Neuroscience, 6(11), 1892-1900. https://doi.org/10.1021/acschemneuro.5b00225

Yang, Q., Jones, W., Wells, P. P., Morgan, D., Dong, L., Hu, B., Dimitratos, N., Dong, M., Bowker, M., Besenbacher, F., Su, R. & Hutchings, G. (2016). Exploring the mechanisms of metal co-catalysts in photocatalytic reduction reactions: Is Ag a good candidate? Applied Catalysis A: General, 518(May), 213-220. https://doi.org/10.1016/j.apcata.2015.10.023

Feng, H., Wu, C., Zhang, P., Mi, J. & Dong, M. (2015). Facile hydrothermal synthesis and formation mechanisms of Bi₂Te₃, Sb₂Te₃ and Bi₂Te₃-Sb₂Te₃ nanowires. RSC Advances, 5(121), 100309-100315. https://doi.org/10.1039/c5ra20014h

Aamann, M. D., Norregaard, R., Kristensen, M. L. V., Stevnsner, T. & Frøkiær, J. (2016). Unilateral ureteral obstruction induces DNA repair by APE1. American Journal of Physiology: Renal Physiology, 310(8), F763-F776. https://doi.org/10.1152/ajprenal.00613.2014

Ejrnæs, R., Brunbjerg, A. K., Wind, P., Brøndum, L. & Hansen, M. D. D. (2015). Urban Green. En undersøgelse af vilde blomster som afsæt for en rigere natur I byerne. Aarhus University, DCE - Danish Centre for Environment and Energy. Technical Report from DCE - Danish Centre for Environment and Energy http://dce2.au.dk/pub/TR69.pdf

Siupka, P., Hamming, O. T., Kang, L., Gad, H. H. & Hartmann, R. (2015). A conserved sugar bridge connected to the WSXWS motif has an important role for transport of IL-21R to the plasma membrane. Genes and Immunity, 16(6), 405-413. https://doi.org/10.1038/gene.2015.22

Ibsen, M. S., Gad, H. H., Andersen, L. L., Hornung, V., Julkunen, I., Sarkar, S. N. & Hartmann, R. (2015). Structural and functional analysis reveals that human OASL binds dsRNA to enhance RIG-I signaling. Nucleic Acids Research, 43(10), 5236-5248. https://doi.org/10.1093/nar/gkv389

Jepsen, M. L., Harmsen, C., Godbole, A. A., Nagaraja, V., Knudsen, B. R. & Ho, Y.-P. (2016). Specific detection of the cleavage activity of mycobacterial enzymes using a quantum dot based DNA nanosensor. Nanoscale, 8(1), 358-364. https://doi.org/10.1039/c5nr06326d

Nunes, F., Verdezoto, N., Fitzpatrick, G., Kyng, M., Grönvall, E. & Storni, C. (2015). Self-Care Technologies in HCI: Trends, Tensions, and Opportunities. ACM Transactions on Computer-Human Interaction, 22(6), Article 33. https://doi.org/10.1145/2803173

Mayle, R., Campbell, I. M., Beck, C. R., Yu, Y., Wilson, M., Shaw, C. A., Bjergbaek, L., Lupski, J. R. & Ira, G. (2015). DNA REPAIR. Mus81 and converging forks limit the mutagenicity of replication fork breakage. Science, 349(6249), 742-747. https://doi.org/10.1126/science.aaa8391

Mundbjerg, K., Jørgensen, S. W., Fredsøe, J., Nielsen, I., Pedersen, J. M., Bentsen, I. B., Lisby, M., Bjergbaek, L. & Andersen, A. H. (2015). Top2 and Sgs1-Top3 Act Redundantly to Ensure rDNA Replication Termination. PLoS Genetics, 11(12), e1005697. https://doi.org/10.1371/journal.pgen.1005697

Hansen, Y. B., Myrhøj, V., Jørgensen, F. S., Oxvig, C. & Sørensen, S. (2015). First trimester PAPP-A2, PAPP-A and hCGβ in small-for-gestational-age pregnancies. Clinical Chemistry and Laboratory Medicine, 54(1), 117-123. https://doi.org/10.1515/cclm-2015-0230

Becker, M. A., Haluska, P., Bale, L. K., Oxvig, C. & Conover, C. A. (2015). A novel neutralizing antibody targeting pregnancy-associated plasma protein-a inhibits ovarian cancer growth and ascites accumulation in patient mouse tumorgrafts. Molecular Cancer Therapeutics, 14(4), 973-981. https://doi.org/10.1158/1535-7163.MCT-14-0880

Oxvig, C. (2015). The role of PAPP-A in the IGF system: location, location, location. Journal of Cell Communication and Signaling, 9(2), 177-87. https://doi.org/10.1007/s12079-015-0259-9

Hansen, T. B., Venø, M. T., Damgaard, C. K. & Kjems, J. (2015). Comparison of circular RNA prediction tools. Nucleic Acids Research. https://doi.org/10.1093/nar/gkv1458

Venø, M. T., Hansen, T. B., Venø, S. T., Clausen, B. H., Grebing, M., Finsen, B., Holm, I. E. & Kjems, J. (2015). Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development. Genome Biology, 16, Article 16:245. https://doi.org/10.1186/s13059-015-0801-3

Ebbesen, K. K., Kjems, J. & Hansen, T. B. (2016). Circular RNAs: Identification, biogenesis and function. BBA General Subjects, 1859(1), 163-168. https://doi.org/10.1016/j.bbagrm.2015.07.007

Branscheid, A., Marchais, A., Schott, G., Lange, H., Gagliardi, D., Andersen, S. U., Voinnet, O. & Brodersen, P. (2015). SKI2 mediates degradation of RISC 5'-cleavage fragments and prevents secondary siRNA production from miRNA targets in Arabidopsis. Nucleic Acids Research, 43(22), 10975-10988. https://doi.org/10.1093/nar/gkv1014

Larsen, M. A. B., Thøgersen, J., Stephansen, A. B., Peón, J., Sølling, T. I. & Keiding, S. R. (2016). Transient IR Spectroscopic Observation of Singlet and Triplet States of 2-Nitrofluorene: Revisiting the Photophysics of Nitroaromatics. Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory, 120(1), 28-35. https://doi.org/10.1021/acs.jpca.5b09125

Byrne, S., Nagy, I., Pfeifer, M., Armstead, I., Swain, S., Studer, B., Mayer, K., Campbell, J. D., Czaban, A., Hentrup, S., Panitz, F., Bendixen, C., Hedegaard, J., Caccamo, M. & Asp, T. (2015). A synteny-based draft genome sequence of the forage grass Lolium perenne. The Plant Journal, 84(4), 816-826. https://doi.org/10.1111/tpj.13037

Nygaard, I., Mortensen, K. E., Hedegaard, J., Conley, L., Bendixen, C., Sveinbjørnsson, B. & Revhaug, A. (2015). Tissue Remodelling following Resection of Porcine Liver. BioMed Research International, Article PMID: 26240819. https://doi.org/10.1155%2F2015%2F248920

Lervik, S., Kristoffersen, A. B., Conley, L., Hedegaard, J. & Olsaker, I. (2015). Gene expression during testis development in Duroc boars. Animal, Article PMID: 26016904. http://dx.doi.org/10.1017/S1751731115000907

Chen, M., Le, D. Q. S., Kjems, J., Bünger, C. & Lysdahl, H. (2015). Improvement of distribution and osteogenic differentiation of human mesenchymal stem cells by hyaluronic acid and β-tricalcium phosphate-coated polymeric scaffold in vitro. BioResearch Open Access, 4(1), 363-373. https://doi.org/10.1089/biores.2015.0021

Willerslev, R. (2017). The Optimal Sacrifice: The Study of Voluntary Death among the Siberian Chukchi. In A. C. G. M. Robben (Ed.), Death, Mourning, and Burial: A Cross-Cultural Reader ((2nd edition) ed., pp. 115-128). Wiley-Blackwell.

Toju, H., Guimaraes, P. R. J., Olesen, J. M. & Thompson, J. N. (2015). Below-ground plant-fungus network topology is not congruent with above-ground plant-animal network topology. . Science Advances, 1(9), Article e1500291. https://doi.org/10.1126/sciadv.1500291

Olesen, J. M. (2015). Naturens sorte torsdag. Weekendavisen.

Bødker, S., Dindler, C., Halskov, K. & Iversen, O. S. (2016). Advances in Participatory Design. In CHI EA 2016: #chi4good - Extended Abstracts, 34th Annual CHI Conference on Human Factors in Computing Systems (pp. 984-987). Association for Computing Machinery. https://doi.org/10.1145/2851581.2856688

Jakobsen, H., Markager, S. & Carstensen, J. (2015). Planteplankton, dyreplankton og vandets klarhed. In J. W. Hansen (Ed.), Marine områder 2014: NOVANA (pp. 43-57). Aarhus University, DCE - Danish Centre for Environment and Energy. http://dce2.au.dk/pub/SR167.pdf

Beinik, I., Helström, M., Jensen, T. N., Broqvist, P. & Lauritsen, J. V. (2015). Enhanced wetting of Cu on ZnO by migration of subsurface oxygen vacancies. Nature Communications, 6, Article 8845. https://doi.org/10.1038/ncomms9845

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Anne Kirstine Mehlsen