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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Paludan, K. & Bach-Nielsen, C. (Ed.) (2002). Når uddannelsesidéerne møder homo sapiens. In Dannelse Uddannelse Universiteter: Festskrift til Henning Lehmann den 31. januar 2002 (pp. 238-259). Aarhus Universitetsforlag.
Besenbacher, S., Mailund, T., Westh-Nielsen, L. & Pedersen, C. S. (2004). RBT -- A tool for building refined Buneman trees. Bioinformatics, doi:10.1093/bti195, in press.
Boni, M. F., Gog, J. R., Andreasen, V. & Christiansen, F. B. (2004). Influenza drift and epidemic size: the race between generating and escaping immunity. Theoretical Population Biology, 65, 179-191.
Brown, P. E., Christensen, O. F., Clough, H. E., Diggle, P. J., Hart, C. A., Hazel, S., Kemp, R., Leatherbarrow, A. J. H., Moore, A., Sutherst, J., Turner, J., Williams, N. J., Wright, E. J. & French, N. P. (2004). The frequency and spatial distribution of environmental campylobacter spp. Applied and Environmental Microbiology, 70, 6501-6511.
Christensen, O. F., Cassiani, G., Diggle, P. J., Ribeiro, P. J. & Andreotti, G. (2004). Statistical estimation of the relative efficiency of natural attenuation mechanisms in contaminated aquifers. Stochastic environmental research and risk assessment (SERRA), 18, 339-350.
Christiansen, F. B., Singh, R. S. (Ed.), Jain, S. (Ed.) & Uyenoyama, M. (Ed.) (2004). Density dependent selection. In The Evolution of Population Biology: Modern Synthesis (pp. 139-155). Cambridge University Press.
Einer-Jensen, K., Ahrens, P., Forsberg, R. & Lorenzen, N. (2004). Evolution of the fish rhabdovirus viral haemorrhagic septicaemia virus. Journal of General Virology, 85(5), 1167-1179.
Pedersen, J. S., Forsberg, R., Meyer, I. M. & Hein, J. (2004). An evolutionary model for protein-coding regions with conserved RNA structure. Mol Biol Evol. Oct;21, 10, 1913-1922.
Pedersen, J. S., Meyer, I. M., Forsberg, R., Simmonds, P. & nullJA, H. (2004). Comparative method for finding and folding RNA secondary structures within protein-coding regions. Nucleic Acids Res Sep 24, 32(16), 4925-4936.
Rafnar, T., Thorlacius, S., Steingrimsson, E., Schierup, M. H., Madsen, J. N., Calian, V., Eldon, B. J., Jonsson, T., Hein, J. & Thorgeirsson, S. S. (2004). The Icelandic Cancer Project--a population-wide approach to studying cancer. Nat Rev Cancer Jun, 4(6), 488-492.
Rivas, S., Rougon-Cardoso, A., Smoker, M., Schauser, L., Yoshioka, H. & Jones, J. D. G. (2004). CITRX thioredoxin interacts with the tomato Cf-9 resistance protein and negatively regulates defence. EMBO Journal, 23, 2156-2165.
Willerslev, E., Hansen, A., Rønn, R., Brand, T. B., Barnes, I., Wiuf, C., Gilichinsky, D., Mitchell, D. & Cooper, A. (2004). Long-term persistence of bacterial DNA. Current Biology, 14, 9-10.
Wiuf, C., Zhao, K., Innan, H. & Nordborg, M. (2004). The probability and chromosomal extent of trans-specific polymorphisms. Genetics, 168, 2363-2372.
Arias, C. A. & Brix, H. (2005). Initial experience from a compact vertical flow constructed wetland treating single household wastewater. In J. Vymazal (Ed.), Natural and Constructed Wetlands: Nutrients, Metals and Management (pp. 52-64). Backhuys Publishers.
Foster, J. N., Greenwald, M. B., Kirkegaard, C., Pierce, B. C. & Schmitt, A. (2005). Exploiting Schemas in Data Synchronization. In DBPL 2005 (pp. 42-57). Springer LNCS.
Kiderlen, M. & Pfrang, A. (2005). Algorithms to estimate the rose of directions of a spatial fibre system. Journal of Microscopy, 219(2), 50-60.
Schauser, L., Fredslund, J., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). A computational pipeline towards the development of comparative anchor tagged sequence (CATS) markers. In M. O. Humphrey (Ed.), Proceedings of the International Grassland Congress (IGC) (pp. 73-81). Wageningen Academic Publishers.
Gardner, R., Kiderlen, M. & Milanfar, P. (2006). Convergence of Algorithms for Reconstructing Convex Bodies and Directional Measures. Annals of Statistics, 34(3), 1331-1374.
Kanamori, N., Madsen, L. H., Radutoiu, E. S., Frantescu, M., Quistgaard, E. M. H., Miwa, H., Downie, J. A., James, E., Felle, H. H., Haaning, L. L., Jensen, T. H., Sato, S., Nakamura, Y., Tabata, S., Sandal, N. N. & Stougaard, J. (2006). A nucleoporin is required for induction of Ca2+ spiking in legume nodule development and essential for rhizobial and fungal symbiosis. Proceedings of the National Academy of Sciences (PNAS), 103, 359-364.
Stetkær, H. (2005). Functional equations and matrix-valued spherical functions. Aequationes Mathematicae, 69, 271-292.
Kyng, K., May, A., Stevnsner, T. V., Becker, K. G., Kølvraa, S. & Bohr, V. (2005). Gene expression responses to DNA damage are alterd in human aging and in Werner Syndrome. Oncogene, 24, 5026-5042.
Fynbo, C. H., Lorentsen, R. H., Etzerodt, M., Thøgersen, H. C. & Holtet, T. L. (2005). Characterization of a recombinant granzyme B derivatives as a "restriction" protease. Prot. Expr. Purif, 39(2), 209-218.
Stetkær, H. (2005). Operator-valued spherical functions. Journal of Functional Analysis, 224, 338-351.
Elbassioni, K., Katriel, I., Kutz, M. & Mahajan, M. (2005). Simultaneous Matchings. In ISAAC 2005 (pp. 106-115). Springer.
Lorentsen, R. H., Fynbo, C. H., Thøgersen, H. C., Etzerodt, M. & Holtet, T. L. (2005). Expression, refolding and purification of recombinant human granzyme B. Prot. Expr. Purif, 39(1), 18-26.
Thorslund, T., von Kobbe, C., Harrigan, J. A., Indig, F. E., Christiansen, M., Stevnsner, T. V. & Bohr, V. (2005). Cooperation of the Cockayne syndrome group B protein and poly (ADP-ribose) polymerase 1 in the response to oxidative stress. Molecular and Cellular Biology, 25, 7625-7236.
Stetkær, H. (2006). d'Alembert's and Wilson's equations on Lie groups by P. de Place Friis. Zentralblatt für Mathematik, (Zbl 1060.39026).
Katriel, I. & van Hentenryck, P. (2005). Maintaining Longest Paths in Cyclic Graphs. In CP 2005 (pp. 358-372). Springer LNCS.
Bent, R., Katriel, I. & van Hentenryck, P. (2005). Sub-Optimality Approximations. In Springer LNCS 3709 (pp. 122-136). Springer.
Etzerodt, M. (2005). Multimerised HIV fusion inhibitors. (Patent No. WO 2005080418).
Braïda, B., Thøgersen, L., Wu, W. & Hiberty, P. C. (2002). Stability, Metastability, and Unstability of Three-Electron-Bonded Radical Anions. A Model ab Initio Theoretical Study. Journal of the American Chemical Society, 124, 11781-11790.
Dieter, Strutwolf, J. & Thøgersen, L. (2001). Investigation of some starting protocols for BDF (FIRM) in electrochemical digital simulation. Journal of Electroanalytical Chemistry, 512, 119-123.
Szalay, P. G., Thøgersen, L. S., Olsen, J., Kállay, M. & Gauss, J. (2004). Equilibrium Geometry of the Ethynyl (CCH) Radical. Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory, 108, 3030-3034.
Thøgersen, L., Olsen, J., Köhn, A., Jørgensen, P., Salek, P. & Helgaker, T. (2005). The trust-region self-consistent field method in Kohn-Sham density-functional theory. Journal of Chemical Physics, 123, 074103-1-17.

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Cresswell, G., Lund-Hansen, L. C. & Nielsen, M. H. (2014). Dipole vortices in the Great Australian Bight. Marine and Freshwater Research, 66(2), 135-144. https://doi.org/10.1071/MF13305
Boström, C., Baden, S., Bockelmann, A.-C., Dromph, K. M., Frederiksen, S., Gustafsson, C., Krause-Jensen, D., Möller, T., Nielsen, S. L., Olesen, B., Olsen, J., Pihl, L. & Rinde, E. (2014). Distribution, structure and function of Nordic seagrass ecosystems: Implications for coastal management and conservation. Aquatic Conservation, 24(3), 410-434. https://doi.org/10.1002/aqc.2424
Gallego, I., Davidson, T. A., Jeppesen, E., Perez-Martinez, C., Fuentes-Rodriguez, F., Melchor, J. & Casas, J. (2014). Disturbance from pond management obscures local and regional drivers of assemblages of primary producers. Freshwater Biology, 59(7), 1406–1422. https://doi.org/10.1111/fwb.12354
Tur, C., Vigalondo, B., Nielsen, K. T., Olesen, J. M. & Traveset, A. (2014). Downscaling pollen-transport networks to the level of individuals. Journal of Animal Ecology, 83(1), 306–317. https://doi.org/10.1111/1365-2656.12130
Alex Shorter, K., Murray, M. M., Johnson, M., Moore, M. & Howle, L. E. (2014). Drag of suction cup tags on swimming animals: Modeling and measurement. Marine Mammal Science, 30(2), 726-746. https://doi.org/10.1111/mms.12083
Levi, P. S., Riis, T., Tank, J., Reisinger, A. & Baattrup-Pedersen, A. (2014). Dynamics of seasonal nutrient uptake are controlled by ecosystem metabolism in macrophyte-dominated streams. Abstract from Joint Aquatic Sciences Meeting, Portland, Oregon, United States.
Madsen, P. P. T. & Surlykke, A. (2014). Echolocation in air and water. In Biosonar: Springer Handbook of Auditory Research (Vol. 51, pp. 257-304). Springer. https://doi.org/10.1007/978-1-4614-9146-0_9
Schleuning, M., Ingmann, L., Strauss, R., Fritz, S. A., Dalsgaard, B., Dehling, D. M., Plein, M., Saavedra, F., Sandel, B. S., Svenning, J.-C., Böhning-Caese, K. & Dormann, C. F. (2014). Ecological, historical and evolutionary determinants of modularity in weighted seed-dispersal networks. Ecology Letters, 17, 454-463. https://doi.org/10.1111/ele.12245
Heleno, R., Garcia, C., Jordano, P., Traveset, A., Gómez, J. M., Blüthgen, N., Memmott, J., Moora, M., Cerdeira, J. & Olesen, J. M. (2014). Ecological networks: Delving into the architecture of biodiversity. Biology Letters, 10(1), Article 20131000. https://doi.org/10.1098/rsbl.2013.1000
Olesen, B., Krause-Jensen, D., Marbà, N. & Christensen, P. B. (2014). Eelgrass (Zostera marina L.) in subarctic Greenland: distribution, biomass and production. Paper presented at Seagrasses in Europe: Threats, Responses and Management, Olhão, Portugal.
Carvalho, P., Lv, T., Zhang, Y., Arias, C. A. & Brix, H. (2014). Emergent macrophytes for emergent micropollutants removal from aquatic systems. Abstract from 14th International Conference on Wetland Systems for Water Pollution Control, Shanghai, China.
Weber, R. E. (2014). Enthalpic consequences of reduced chloride binding in Andean frog (Telmatobius peruvianus) hemoglobin. Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 184(5), 613-621. https://doi.org/10.1007/s00360-014-0823-2
Weber, R. E., Fago, A. & Campbell, K. L. (2014). Enthalpic partitioning of the reduced temperature sensitivity of O2 binding in bovine hemoglobin. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 176, 20-25. https://doi.org/10.1016/j.cbpa.2014.06.012
Furrow, R. E., Christiansen, F. B. & Feldman, M. W. (2014). Epigenetic variation, phenotypic heritability, and evolution. In A. Naumova & C. Greenwood (Eds.), Epigenetics and Complex Traits (pp. 233-246). Springer. https://doi.org/10.1007/978-1-4614-8078-5_1
Alstrup, A. K. O. & Wang, T. (2014). Evolution: 1872. Morgenavisen JyllandsPosten, JPÅrhus.
Poelmann, R. E., Groot, A. C. G., Vicente-Steijn, R., Wisse, L. J., Bartelings, M. M., Everts, S., Hoppenbrouwers, T., Kruithof, B. P. T., Jensen, B., de Bruin, P. W., Hirasawa, T., Kuratani, S., Vonk, F., van de Put, J. M. M. S., de Bakker, M. A. & Richardson, M. K. (2014). Evolution and development of ventricular septation in the amniote heart. PLoS One, 9(9), e106569. https://doi.org/10.1371/journal.pone.0106569
Jensen, B., J. D. Boukens, B., Wang, T., F. M. Moorman, A. & M. Christoffels, V. (2014). Evolution of the Sinus Venosus from Fish to Human. Journal of Cardiovascular Development and Disease, 1(1), 14-28. https://doi.org/10.3390/jcdd1010014
Christensen-Dalsgaard, J., Christensen, C. B. & Madsen, P. P. T. (2014). Evolution of the tetrapod middle ear. Poster session presented at 2014 Congress for Neuroethology, Sapporo, Japan.
Røy, H. (2014). Experimental assessment of community metabolism in the subsurface. In J. Kallmeyer & D. Wagner (Eds.), Microbial Life of the Deep Biosphere (pp. 303-317). De Gruyter. https://doi.org/10.1515/9783110300130.303