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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Agarwal, P. K., Arge, L. A., Danner, A. & Holland-Minkley, B. (2003). Cache-oblivious data structures for orthogonal range searching. In Proceedings of the nineteenth annual symposium on Computational geometry (pp. 237-245). Association for Computing Machinery. https://doi.org/10.1145/777792.777828
Agarwal, P. K., Arge, L. A. & Vahrenhold, J. (2001). Time Responsive External Data Structures for Moving Points. In F. Dehne, J.-R. Sack & R. Tamassia (Eds.), Algorithms and Data Structures: 7th International Workshop, WADS 2001 Providence, RI, USA, August 8-10, 2001 Proceedings (pp. 50-61). Springer. https://doi.org/10.1007/3-540-44634-6_6
Agarwal, P. K., Arge, L. A., Procopiuc, O. & Vitter, J. S. (2001). A Framework for Index Bulk Loading and Dynamization. In F. Orejas, P. G. Spirakis & J. van Leeuwen (Eds.), Automata, Languages and Programming: 28th International Colloquium, ICALP 2001 Crete, Greece, July 8-12, 2001 Proceedings (pp. 115-127). Springer. https://doi.org/10.1007/3-540-48224-5_10
Agarwal, P. K., Arge, L. A., Brodal, G. S. & Vitter, J. S. (1999). I/O-efficient dynamic point location in monotone planar subdivisions. In Proceedings of the tenth annual ACM-SIAM symposium on Discrete algorithms (pp. 11-20). Association for Computing Machinery.
Agarwal, P. K., Arge, L. A., Murali, T. M., Varadarajan, K. R. & Vitter, J. S. (1998). I/O-efficient algorithms for contour-line extraction and planar graph blocking. In Proceedings of the ninth annual ACM-SIAM symposium on Discrete algorithms (pp. 117-126). Association for Computing Machinery.
Agarwal, P. K., Arge, L. A. & Yi, K. (2006). I/O-Efficient Batched Union-Find and Its Applications to Terrain Analysis. In Proceedings of the twenty-second annual symposium on Computational geometry (pp. 167-176). Association for Computing Machinery. https://doi.org/10.1145/1137856.1137884
Agarwal, P. K., Arge, L. A. & Erickson, J. (2000). Indexing Moving Points. In Proceedings of the nineteenth ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems (pp. 175-186). Association for Computing Machinery. https://doi.org/10.1145/335168.335220
Agarwal, P. K., Arge, L. A., Erickson, J., Franciosa, P. G. & Vitter, J. S. (1998). Efficient Searching with Linear Constraints. In Proceedings of the seventeenth ACM SIGACT-SIGMOD-SIGART symposium on Principles of database systems (pp. 169-178). Association for Computing Machinery. https://doi.org/10.1145/275487.275506
Agarwal, P. K., Arge, L. A. & Yi, K. (2010). I/O-Efficient Batched Union-Find and Its Applications to Terrain Analysis. A C M Transactions on Algorithms, 7(1), Article 11. https://doi.org/10.1145/1868237.1868249
Agarwal, P. K., Arge, L., Kaplan, H., Molad, E., Tarjan, R. E. & Yi, K. (2012). An Optimal Dynamic Data Structure for Stabbing-Semigroup Queries. S I A M Journal on Computing, 41(1), 104–127. https://doi.org/10.1137/10078791X
Agarwal, P. K., Yang, J., Arge, L., Govindarajan, S. & Yi, K. (2013). Efficient external memory structures for range-aggregate queries. Computational Geometry, 46(3), 358-370. https://doi.org/10.1016/j.comgeo.2012.10.003
Agarwal, P. K., Arge, L. & Staals, F. (2018). Improved dynamic geodesic nearest neighbor searching in a simple polygon. In C. D. Toth & B. Speckmann (Eds.), 34th International Symposium on Computational Geometry, SoCG 2018 (Vol. 99, pp. 4:1-4:14). Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.SoCG.2018.4
Agarwal, A., Dowsley, R., McKinney, N. D., Wu, D., Lin, C.-T., De Cock, M. & Nascimento, A. C. A. (2019). Protecting Privacy of Users in Brain-Computer Interface Applications. IEEE Transactions on Neural Systems and Rehabilitation Engineering, 27(8), 1546-1555. https://doi.org/10.1109/TNSRE.2019.2926965
Agarwal, A., Dowsley, R., McKinney, N. D., Wu, D., Lin, C. T., Cock, M. D. & Nascimento, A. (2019). Privacy-Preserving Linear Regression for Brain-Computer Interface Applications. In Y. Song, B. Liu, K. Lee, N. Abe, C. Pu, M. Qiao, N. Ahmed, D. Kossmann, J. Saltz, J. Tang, J. He, H. Liu & X. Hu (Eds.), Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018 (pp. 5277-5278). Article 8621861 IEEE. https://doi.org/10.1109/BigData.2018.8621861
Agarwal, P., Chatterjee, K., Pathak, S., Pavlogiannis, A. & Toman, V. (2021). Stateless Model Checking Under a Reads-Value-From Equivalence. In A. Silva, K. Rustan & M. Leino (Eds.), Computer Aided Verification - 33rd International Conference, CAV 2021, Proceedings: Proceedings (Vol. 1, pp. 341-366). Springer. https://doi.org/10.1007/978-3-030-81685-8_16
Agarwal, A., Bienstock, A., Damgård, I. & Escudero, D. (2025). Honest Majority GOD MPC with O(depth(C)) Rounds and Low Online Communication. In K.-M. Chung & Y. Sasaki (Eds.), Advances in Cryptology – ASIACRYPT 2024 - 30th International Conference on the Theory and Application of Cryptology and Information Security, Proceedings (pp. 234-265). Springer Nature. https://doi.org/10.1007/978-981-96-0938-3_8
Agarwal, A., Baum, C., Braun, L. & Scholl, P. (2025). Low-Bandwidth Mixed Arithmetic in VOLE-Based ZK from Low-Degree PRGs. In S. Fehr & P.-A. Fouque (Eds.), Advances in Cryptology – EUROCRYPT 2025 - 44th Annual International Conference on the Theory and Applications of Cryptographic Techniques, 2025, Proceedings: EUROCRYPT 2025 (Vol. 4, pp. 396-426). Springer. https://doi.org/10.1007/978-3-031-91134-7_14
Agathokleous, E., Barceló, D., Rinklebe, J., Sonne, C., Calabrese, E. J. & Koike, T. (2022). Hormesis induced by silver iodide, hydrocarbons, microplastics, pesticides, and pharmaceuticals: Implications for agroforestry ecosystems health. Science of the Total Environment, 820, Article 153116. https://doi.org/10.1016/j.scitotenv.2022.153116
Agathokleous, E., Sonne, C., Benelli, G., Calabrese, E. J. & Guedes, R. N. C. (2023). Low-dose chemical stimulation and pest resistance threaten global crop production. Science of the Total Environment, 878, Article 162989. https://doi.org/10.1016/j.scitotenv.2023.162989
Ageby, L., Angelucci, D. E., Brill, D., Carrer, F., Rades, E. F., Rethemeyer, J., Brückner, H. & Klasen, N. (2021). Rock surface IRSL dating of buried cobbles from an alpine dry-stone structure in Val di Sole, Italy. Quaternary Geochronology, 66, Article 101212. https://doi.org/10.1016/j.quageo.2021.101212
Ager, M. S. (2004). From Natural Semantics to Abstract Machines. BRICS Report Series, (RS-04-20).
Ager, M. S., Biernacki, D., Danvy, O. & Midtgaard, J. (2003). A Functional Correspondence Between Evaluators and Abstract Machines. In K. Sagonas & D. Miller (Eds.), Proceedings of the 5th ACM SIGPLAN international conference on Principles and practice of declaritive programming (pp. 8-19). Association for Computing Machinery. https://doi.org/10.1145/888251.888254
Ager, M. S., Danvy, O. & Goldberg, M. (2002). A Symmetric Approach to Compilation and Decompilation. In T. Æ. Mogensen, D. Schmidt & H. Sudborough (Eds.), The Essence of Computation: Complexity, Analysis, Transformation (pp. 296-331). Springer. https://doi.org/10.1007/3-540-36377-7_14
Ager, M. S., Danvy, O. & Rohde, H. K. (2003). Fast Partial Evaluation of Pattern Matching in Strings. In Proceedings of the 2003 ACM SIGPLAN workshop on Partial evaluation and semantics-based program manipulation (pp. 3-9). Association for Computing Machinery. https://doi.org/10.1145/777388.777390
Ager, M. S., Danvy, O. & Rohde, H. K. (2002). On obtaining Knuth, Morris, and Pratt's string matcher by partial evaluation. In K. Asai (Ed.), ASIA-PEPM '02 Proceedings of the ASIAN symposium on Partial evaluation and semantics-based program manipulation (pp. 32-46). Association for Computing Machinery. https://doi.org/10.1145/568173.568177
Ager, M. S., Danvy, O. & Goldberg, M. (2002). A Symmetric Approach to Compilation and Decompilation. BRICS Report Series, (RS-02-37).
Agerbo, E. & Cornils, A. (1998). How to Preserve the Benefits of Design Patterns. In Proceedings of the 13th ACM SIGPLAN conference on Object-oriented programming, systems, languages, and applications (pp. 134-143). Association for Computing Machinery. https://doi.org/10.1145/286936.286952
Agerbo, E. & Cornils, A. (1998). Implementing GoF Design Patterns in BETA. In J. Bosch & S. Mitchell (Eds.), Object-Oriented Technologys: ECOOP’97 Workshop Reader ECOOP’97 Workshops Jyväskylä, Finland, June 9–13, 1997 Proceedings (pp. 92-95). Springer. https://doi.org/10.1007/3-540-69687-3_17

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Weber, R. E., Wells, R. M. & Tougaard, S. (1983). Antagonistic effect of urea on oxygenation-linked binding of ATP in an elasmobranch hemoglobin. Life Sciences, 32(18), 2157-61.
Weber, R. E., Bol, J. F., Johansen, K. & Wood, S. C. (1973). Physicochemical properties of the hemoglobin of the coelocanth Latimeria chalumnae. Archives of Biochemistry and Biophysics, 154(1), 96-105.
Weber, R. E. & White, F. N. (1985). Temperature dependence of blood O2 affinity in the alligator. In Temperature dependence of blood O2 affinity in the alligator. (Vol. 44, pp. 1347-1347). Fed. Proc. (Fed. Am. Soc. Exp. Biol.) .
Weber, R. E. (1984). Blood adaptations for maternal-fetal oxygen transfer in the viviparous teleost, Zoarces viviparus L. In R. Seymour (Ed.), Respiration and Metabolism of Embryonic Vertebrates Dr W. Junk Publ..
Weber, R. E., Wells, R. M. G. & Rossetti, J. E. (1983). Allosteric interactions governing oxygen equilibria in the hemoglobin system of the spiny dogfish, Squalus acanthias. Journal of Experimental Biology, 103, 109-120.
Weber, R. E., Johansen, K. & Abe, A. S. (1981). Myoglobin from the burrowing reptile, Amphisbaena alba. Concentrations and functional characteristics. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 68A, 159-165.
Weber, R. E. & Hagerman, L. (1981). Oxygen and carbon dioxide transporting qualities of hemocyanin in the hemolymph of a natant decapod Palaemon adspersus. Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 145, 21-27.
Weber, R. E. & Hagerman, L. (1981). Oxygen and carbon dioxide transporting qualities of hemocyanin in the hemolymph of a natant decapod Palaemon adspersus. Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 145, 21-27.
Weber, R. E. (1982). Intraspecific adaptation of hemoglobin function in fish to oxygen availability. In A. D. F. Addink & N. Spronk (Eds.), Exogenous and Endogenous Influences on Metabolic and Neural Control, Vol. 1 (pp. 87-102). Pergamon Press.
Weber, R. E. & Johansen, K. (1979). Oxygenation-linked binding of carbon dioxide and allosteric phosphate cofactors by lungfish hemoglobin: Animals and Environmental Fitness. In R. Gilles (Ed.), Animals and Environmental Fitness (pp. 49-50). Pergamon Press.
Weber, R. E., Wood, S. C. & Davis, B. J. (1979). Acclimation to hypoxic water in facultative air-breathing fish: Blood oxygen affinity and allosteric effectors. Comparative Biochemistry and Physiology (historisk, uspecificeret), 62A, 125-129.
Weber, R. E. & Lykkeboe, G. (1978). Respiratory adaptations in carp blood. Influences of hypoxia, red cell organic phosphates, divalent cations and CO2 on hemoglobin-oxygen affinity. Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology, 128B, 127-137.
Weber, R. E. (1978). Respiration. In P. J. Mill (Ed.), Physiology of Annelids (pp. 369-392). Academic Press.
Weber, R. E. (1978). Respiratory pigments. In P. J. Mill (Ed.), Physiology of Annelids (pp. 393-446). Academic Press.
Weber, R. E., Bonaventura, J., Sullivan, B. & Bonaventura, C. (1978). Oxygen equilibria and ligand binding kinetics of erythrocruorins from two burrowing polychaetes of different modes of life, Marphysa sanguinea and Diopatra cuprea. Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 123, 177-184.
Weber, R. E., Mangum, C. P., Steinman, H., Bonaventura, C., Sullivan, B. & Bonaventura, J. (1977). Hemoglobins of two terebellid polychaetes: Enoplobranchus sanguineus and Amphitrite ornata. Comparative Biochemistry and Physiology (historisk, uspecificeret), 56A, 179-187.
Weber, R. E. & Heidemann, W. (1977). The coelomic haemoglobin from the bloodworm Glycera rouxii. Molecular and oxygenation properties. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 57, 151-155.
Weber, R. E., Sullivan, B., Bonaventura, J. & Bonaventura, C. (1977). The haemoglobin systems of the bloodworms Glycera dibranchiata and G. americana. Oxygen binding properties of haemolysates and component haemoglobins. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 58B, 183-187.
Weber, R. E., Johansen, K., Lykkeboe, G. & Maloiy, G. M. O. (1977). Oxygen-binding properties of hemoglobins from estivating and active African lungfish. Journal of Experimental Zoology, 199, 85-96.
Weber, R. E., Wood, S. C. & Lomholt, J. P. (1976). Temperature acclimation and oxygen-binding properties of blood and multiple haemoglobins of rainbow trout. Journal of Experimental Biology, 65, 333-345.
Weber, R. E. & Bol, J. F. (1976). Heterogeneity and oxygen equilibria of haemoglobin from the bloodworm Glycera gigantea. Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology, 53, 23-30.
Weber, R. E. & de Wilde, J. A. M. (1976). Multiple haemoglobins in plaice and flounder and their functional properties. Comparative Biochemistry and Physiology (historisk, uspecificeret), 54B, 433-437.
Weber, R. E., Hemmingsen, E. A. & Johansen, K. (1974). Functional and biochemical studies of penguin myoglobin. Comparative Biochemistry and Physiology (historisk, uspecificeret), 49B, 197-214.
Weber, R. E. (1971). On the excretion of glucose in the lobster Jasus lalandii (Crustacea, Decapoda). Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 38, 465-467.
Weber, R. E. & Pauptit, E. (1972). Molecular and functional heterogeneity in myoglobin from the polychaete Arenicola marina L. Archives of Biochemistry and Biophysics, 148(1), 322-324. http://
Weber, R. E. & van Marrewijk, W. J. A. (1972). Free amino acids in the shrimp Crangon crangon and their osmoregulatory significance. Netherlands Journal of Sea Research, 5, 391-415.
Weber, R. E. (1972). On the variation in oxygen-binding properties of haemoglobins of lugworms (Arenicolidae, Polychaeta): Proceedings Vth European Marine Biology Symposium (Venice, Italy, Oct. 1970). In B. Battaglia (Ed.), Proceedings Vth European Marine Biology Symposium (Venice, Italy, Oct. 1970) (pp. 231-243). Piccin Editore.