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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Achenbach, M. (2008). Hybrid Program Analysis for Error Detection. Poster session presented at Programming Language Design and Implementation (PLDI), Tucson, United States.
Achenbach, M. & Ostermann, K. (2010). Testing Object-Oriented Programs using Dynamic Aspects and Non-Determinism. In Proceedings of the 1st Workshop on Testing Object-Oriented Systems. Etoos '10 (pp. Article No. 3 ). Association for Computing Machinery. https://doi.org/10.1145/1890692.1890695
Achenbach, M. & Ostermann, K. (2010). Growing a Dynamic Aspect Language in Ruby. Paper presented at 9th International Conference on Aspect-Oriented Software Development, Rennes and Saint Malo, France.
Achenbach, L. & Brix, H. (2012). Response to Increasing Salt Stress of Genetically Different Phragmites Australis clones. Poster session presented at 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.
Achenbach, L. & Brix, H. (2010). Salinity Tolerance and Successful Invasion of genetically different clones of Phragmites australis. Poster session presented at NEOBIOTA 2010 Conference: Biological Invasions in a Changing World - from Science to Management, København, Denmark.
Achenbach, L. (2012). Differences in Salinity Tolerance of fifteen genotypes of Phragmites australis. Poster session presented at Symposium of Aquatic Plants, Poznan, Poland.
Achenbach, L. & Brix, H. (2012). Response to Increasing Salt Stress of Genetically Different Phragmites australis Clones. Abstract from Proceedings from the 7th SWS 2012 European Chapter Meeting, Aarhus, Denmark.
Achermann, D. (2018). Snow and Avalanche Research as Patriotic Duty? The Institutionalization of a Scientific Discipline in Switzerland. In J. Herzberg, C. Kehrt & F. Torma (Eds.), Ice and snow in the Cold War: Histories of Extreme Climatic Environments Berghahn Books.
Achyuthan, K. E., Slaughter, T. F., Santiago, M. A., Enghild, J. J. & Greenberg, C. S. (1993). Factor XIIIa-derived peptides inhibit transglutaminase activity. Localization of substrate recognition sites. Journal of Biological Chemistry, 268(28), 21284-92.
Ackerman, M., Ben-David, S., Branzei, S. & Loker, D. (2012). Weighted Clustering. In Proceedings of the Twenty-Sixth AAAI Conference on Artificial Intelligence (pp. 858-863). AAAI Press.
Ackerman, M. & Branzei, S. (2014). The Authorship Dilemma: Alphabetical or Contribution? In A. Bazzan & M. Huhns (Eds.), Proceedings of the 2014 international conference on Autonomous agents and multi-agent systems : AAMAS '14 (pp. 1487-1488). Association for Computing Machinery. http://dl.acm.org/citation.cfm?id=2616025&bnc=1
Ackermann, M. D., Pedersen, T. M., Henriksen, B. L. M., Robach, O., Bobaru, S. C., Popa, I., Quiros, C., Kim, H., Hammer, B., Ferrer, S. & Frenken, J. W. M. (2005). Structure and reactivity of surface oxides on Pt(110) during catalytic CO Oxidation. Physical Review Letters, 95.
Acocella, M. R., Mancheño García, O., Bella, M. & Jørgensen, K. A. (2004). Organocatalytic Asymmetric Hydroxylation of beta-Keto Esters: Metal-Free Synthesis of Optically Active anti-Diols. J. Org. Chem., 69, 8165-8167.
Acosta, A. C., Arias, C. A., Biller, P. & Brix, H. (2021). Hydrothermal processing for biomass conversion from wetland-engineered wastewater treatment systems (willow-salix viminalis). In B. Pucher, V. Germann, A. Canet-Martí, F. Prenner, K. Kearney, G. Weigelhofer, T. Hein & G. Langergraber (Eds.), Book of abstracts 9th international symposium on wetland Pollutant Dynamics and control (pp. 51-52). University of Natural Resources and Life Sciences, Vienna.
Acosta, A. C., Arias, C. A., Biller, P., Wittig, N. K., Baragau, I. A., Alhnidi, M. J., Ravenni, G., Sárossy, Z., Benedini, L., Abramiuc, L. E., Popescu, D. G., Negassa, W., Marulanda, V. F., Müller-Stöver, D. S. & Brix, H. (2024). Hydrothermal carbonization and pyrolysis in wetland engineering: Carbon sequestration, phosphorus recovery, and structural characterization of willow-based chars with X-ray μ-computed tomography. Chemical Engineering Journal, 492, Article 151916. https://doi.org/10.1016/j.cej.2024.151916
Acosta-Jurado, S., Rodríguez-Navarro, D. N., Kawaharada, Y., Perea, J. F., Gil-Serrano, A., Jin, H., An, Q., Rodríguez-Carvajal, M. A., Andersen, S. U., Sandal, N., Stougaard, J., Vinardell, J. M. & Ruiz-Sainz, J. E. (2016). Sinorhizobium fredii HH103 invades lotus burttii by crack entry in a nod factor-and surface polysaccharide-dependent manner. Molecular plant-microbe interactions, 29(12), 925-937. https://doi.org/10.1094/MPMI-09-16-0195-R
Acosta-Jurado, S., Rodríguez-Navarro, D. N., Kawaharada, Y., Rodríguez-Carvajal, M. A., Gil-Serrano, A., Soria-Díaz, M. E., Pérez-Montaño, F., Fernández-Perea, J., Niu, Y., Alias-Villegas, C., Jiménez-Guerrero, I., Navarro-Gómez, P., López-Baena, F. J., Kelly, S., Sandal, N., Stougaard, J., Ruiz-Sainz, J. E. & Vinardell, J. M. (2019). Sinorhizobium fredii HH103 nolR and nodD2 mutants gain capacity for infection thread invasion of Lotus japonicus Gifu and Lotus burttii. Environmental Microbiology, 21(5), 1718-1739. https://doi.org/10.1111/1462-2920.14584
Acquarone, M., Arthur Berkman, P., Bluhm, B., Christensen, T., Dupuis, A., Edelvang, K., Flores, H., Frie, A. K., Gavrilo, M., Gjøsæter, H., Grebmeier, J., Grøsvik, B. E., Hedges, K. J., van den Heuvel-Greve, M., Hirata, T., Hoel, A. H., Hop, H., Ingvaldsen, R., Lindal Jørgensen, L. ... von Quillfeldt, C. (2022). ICES-PICES-PAME Working Group on Integrated Ecosystem Assessment (IEA) for the Central Arctic Ocean (WGICA). International Council for the Exploration of the Sea (ICES). ICES Scientific Reports Vol. 4 No. 6 https://doi.org/10.17895/ices.pub.9766
Adachi, T., Itakura, K., Ito, K. & Skibsted, E. (2020). Spectral theory for 1-body Stark operators. Journal of Differential Equations, 268(9), 5179-5206. https://doi.org/10.1016/j.jde.2019.11.006
Adachi, T., Itakura, K., Ito, K. & Skibsted, E. (2020). Commutator Methods for N-Body Schrödinger Operators. In P. Miranda, N. Popoff & G. Raikov (Eds.), Spectral Theory and Mathematical Physics (pp. 1-15). Springer.
Adachi, T., Itakura, K., Ito, K. & Skibsted, E. (2021). New methods in spectral theory of N -body Schrödinger operators. Reviews in Mathematical Physics, 33(5), Article 2150015. https://doi.org/10.1142/S0129055X2150015X
Adam, L., Kumar, R., Arroyo-Garcia, L. E., Molenkamp, W. H., Nowak, J. S., Klute, H., Farzadfard, A., Alkenayeh, R., Nielsen, J., Biverstål, H., Otzen, D. E., Johansson, J. & Abelein, A. (2024). Specific inhibition of α-synuclein oligomer generation and toxicity by the chaperone domain Bri2 BRICHOS. Protein Science, 33(8), Article e5091. https://doi.org/10.1002/pro.5091
Adamczyk, A., Wysota, W., Karasiewicz, M. T., Piotrowski, J. A. & Lesemann, J.-E. (2016). Site Zbójenko, geomorphology and postglacial evolution of glacial curvilineations (GCL) landscape on the Dobrzyń Plateau, north-central Poland. In R. J. Sokolowski & D. Moskalewicz (Eds.), Quaternary Geology of North-Central Poland (pp. 99-122). 5xMedia.
Adamczyk, A., Wysota, W., Piotrowski, J. A. & Sobiech, M. (2016). Kręte formy glacjalne (glacial curvilineations) w obszarze ostatniego zlodowaceniana na Niżu Europejskim. Abstract from Stratygrafia Plejstocenu Polski, Poland.
Adamczyk, A., Wysota, W. & Piotrowski, J. (2017). Morfologia pól krętych form glacjalnych (glacial curvilineations, GCLs) na Niżu Europejskim. Abstract from XIth Conference of the Association of Polish Geomorphologists, Warsaw, Poland.
Adamczyk, A., Wysota, W., Piotrowski, J. A. & Weckwerth, P. (2022). EC2-05 Inventory of glacial curvilineations (GCLs) at the southern periphery of the last Scandinavian Ice Sheet. 63-63. Abstract from 35th Nordic Geological Winter Meeting, Reykjavik, Iceland.
Adamek, J., Brandbyge, J., Fidler, C., Hannestad, S., Rampf, C. & Tram, T. (2017). The effect of early radiation in N-body simulations of cosmic structure formation. Royal Astronomical Society. Monthly Notices, 470(1), 303-313. Article stx1157. https://doi.org/10.1093/mnras/stx1157
Adams, M. D., Keep, A. W., Midtgaard, J., Might, M., Chauhan, A. & Dybvig, R. K. (2011). Flow-sensitive type recovery in linear-log time. In Proceedings of the 2011 ACM international Conference on Object Oriented Programming Systems Languages and Applications: OOPSLA '11 (pp. 483-498). Association for Computing Machinery. https://doi.org/10.1145/2048066.2048105
Adams, M. J., Howard, D. M., Luciano, M., Clarke, T.-K., Davies, G., Hill, W. D., Smith, D., Deary, I. J., Porteous, D. J., McIntosh, A. M., 23andMe Research Team & Major Depressive Disorder Working Group of the Psychiatric Genomic Consortium (2020). Genetic stratification of depression by neuroticism: revisiting a diagnostic tradition. Psychological Medicine, 50(15), 2526–2535. https://doi.org/10.1017/S0033291719002629
Adams, M., Buckley, C. E., Busch, M., Bunzel, R., Felderhoff, M., Heo, T. W., Humphries, T. D., Jensen, T. R., Klug, J., Klug, K. H., Møller, K. T., Paskevicius, M., Peil, S., Peinecke, K., Sheppard, D. A., Stuart, A. D., Urbanczyk, R., Wang, F., Walker, G. S. ... Grant, D. M. (2022). Hydride-based thermal energy storage. Progress in Energy, 4(3), Article 032008. https://doi.org/10.1088/2516-1083/ac72ea
Adamsen, C. Q., Møller, A. & Mezzetti, G. (2015). Systematic Execution of Android Test Suites in Adverse Conditions. In Proceedings of the 2015 International Symposium on Software Testing and Analysis, ISSTA '15 (pp. 83-93 ). Association for Computing Machinery. https://doi.org/10.1145/2771783.2771786
Adamsen, C. Q., Mezzetti, G. & Møller, A. (2016). Analyzing Test Completeness for Dynamic Languages. In ISSTA 2016 - Proceedings of the 25th International Symposium on Software Testing and Analysis: ISSTA 2016 (pp. 142-153). Association for Computing Machinery. https://doi.org/10.1145/2931037.2931059
Adamsen, C. Q., Møller, A. & Tip, F. (2017). Practical Initialization Race Detection for JavaScript Web Applications. Proceedings of the ACM on Programming Languages , 1(OOPSLA), 66:1-66:22. Article 66. https://doi.org/10.1145/3133890

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Witte, U., Wenzhofer, F., Sommer, S., Boetius, A., Heinz, P., Aberle, N., Sand, M., Cremer, A., Abraham, WR., Jørgensen, BB. & Pfannkuche, O. (2003). In situ experimental evidence of the fate of a phytodetritus pulse at the abyssal sea floor. Nature, 424(6950), 763-766.
Wisz, M., Olsen, J., Bjerrum, M., Hedeholm, R. A., Sünksen, K., Nielsen, E. E., Grønkjær, P. & Therkildsen, N. O. (2011). Modelling distributions of cod in Greenland: Past present and future. Poster session presented at 12th European Ecological Federation Congress, Avila, Spain.
Wisz, M. S., Broennimann, O., Grønkjær, P., Møller, P. R., Olsen, S. M., Swingedouw, D., Hedeholm, R. B., Nielsen, E. E., Guisan, A. & Pellissier, L. (2015). Arctic warming will promote Atlantic-Pacific fish interchange. Nature Climate Change, 5(3), 261-265. https://doi.org/10.1038/nclimate2500
Wisz, M. S., Broennimann, O., Grønkjær, P., Møller, P. D. R., Olsen, S. M., Swingedouw, D., Hedeholm, R. B., Nielsen, E. E., Guisan, A. & Pellissier, L. (2015). Reply to 'Sources of uncertainties in cod distribution models'. Nature Climate Change, 5(9), 790-791. https://doi.org/10.1038/nclimate2762
Wisniewska, D. M., Kyhn, L. A., Tougaard, J., Simon, M., Lin, Y.-T., Newhall, A., Beedholm, K., Lynch, J. & Madsen, P. P. T. (2014). Propagation of airgun pulses in Baffin Bay 2012. Aarhus University, DCE - Danish Centre for Environment and Energy. Scientific Report from DCE - Danish Centre for Environment and Energy No. 109 http://dce2.au.dk/pub/SR109.pdf
Wisniewska, D. M., Teilmann, J., Hermannsen, L., Johnson, M., Miller, L. A., Siebert, U. & Madsen, P. T. (2016). Quantitative Measures of Anthropogenic Noise on Harbor Porpoises: Testing the Reliability of Acoustic Tag Recordings. In AN. Popper & A. Hawkins (Eds.), Advances in Experimental Medicine and Biology (pp. 1237-1242). Springer. https://doi.org/10.1007/978-1-4939-2981-8_155
Wirta, H., Várkonyi, G., Rasmussen, C., Kaartinen, R., Schmidt, N. M., Hebert, P., Barták, M., Blagoev, G., Disney, H., Ertl, S., Gjelstrup, P., Gwiazdowicz, D., Huldén, L., Ilmonen, J., Jakovlev, J., Jaschhof, M., Kahanpää, J., Kankaanpää, T., Krogh, P. H. ... Roslin, T. (2016). Establishing a community-wide DNA barcode library as a new tool for arctic research. Molecular Ecology Resources, 16(3), 809-822. https://doi.org/10.1111/1755-0998.12489
Wirta, H., Vesterinen, E. J., Hambäck, P. A., Weingartner, E., Rasmussen, C., Reneerkens, J., Schmidt, N. M., Gilg, O. & Roslin, T. (2015). Exposing the structure of an Arctic food web. Ecology and Evolution, 5(17), 3842–3856. https://doi.org/10.1002/ece3.1647, https://doi.org/10.1002/ece3.1647
Winther, G., Wang, T., Lund, S. & Wegener, G. (2012). Betydning af magnesium i psykisk sygdom. Poster session presented at Psykiatriens 7. Forskningsdag, Risskov, Denmark.
Winge, S. B., Dalgaard, M. D., Jensen, J. M., Graem, N., Schierup, M. H., Juul, A., Rajpert-De Meyts, E. & Almstrup, K. (2018). Transcriptome profiling of fetal Klinefelter testis tissue reveals a possible involvement of long non-coding RNAs in gonocyte maturation. Human Molecular Genetics, 27(3), 430-439. https://doi.org/10.1093/hmg/ddx411
Wind, P., Barfod, A. & Brunbjerg, A. K. (2017). Danmarks kystklitter. In Danmarks kystklitter Naturhistorisk Museum.
Wilson, M., Acolas, M.-L., Bégout, M.-L., Madsen, P. T. & Wahlberg, M. (2008). Allis shad (Alosa alosa) exhibit an intensity-graded behavioral response when exposed to ultrasound. Acoustical Society of America. Journal, 124(4), EL243-EL247. https://doi.org/10.1121/1.2960899
Wilson, M., Montie, E. W., Mann, K. A. & Mann, D. A. (2009). Ultrasound detection in the Gulf menhaden requires gas-filled bullae and an intact lateral line. Journal of Experimental Biology, 212, 3422-3427. https://doi.org/10.1242/jeb.033340
Wilson, M., Hanlon, R., Tyack, P. L. & Madsen, P. T. (2008). Big bang? Intense ultrasound does not have any detectable effects on the squid Loligo pealeii. Bioacoustics - the International Journal of Animal Sound and its Recording, 321-323.
Wilson, M. (2011). Acoustic interactions between echolocating toothed whales and their prey. Det Naturvidenskabelige Fakultet, Aarhus Universitet.
Wilms, I. S., Nieveen, M. C., Burgerhout, E., Weber, R. E., Witte, F. & van den Thillart, G. E. E. J. M. (2008). Hypoxia-induced changes in hemoglobins of Lake Victoria cichlids. Abstract from XVthe International Conference on O2 Binding and Sensing Proteins, Aarhus, Denmark.
Willner, W., Jimenez-Alfaro, B., Agrillo, E., Biurrun, I., Campos, J. A., Carni, A., Casella, L., Csiky, J., Custerevska, R., Didukh, Y. P., Ewald, J., Jandt, U., Jansen, F., Kacki, Z., Kavgaci, A., Lenoir, J., Marinsek, A., Onyshchenko, V., Rodwell, J. S. ... Chytrý, M. (2017). Classification of European beech forests: a Gordian Knot? Applied Vegetation Science, 20(3), 494-512. https://doi.org/10.1111/avsc.12299
Williams, J. W., Blois, J. L., Gill, J. L., Gonzales, L. M., Grimm, E. C., Ordonez Gloria, A., Shuman, B. & Veloz, S. D. (2013). Model systems for a no-analog future: species associations and climates during the last deglaciation. New York Academy of Sciences. Annals, 1297, 29-43. https://doi.org/10.1111/nyas.12226
Williams, P. H., Byvaltsev, A. M., Cederberg, B., Berezin, M. V., Odegaard, F., Rasmussen, C., Richardson, L. L., Huang, J., Sheffield, C. S. & Williams, S. T. (2015). Genes Suggest Ancestral Colour Polymorphisms Are Shared across Morphologically Cryptic Species in Arctic Bumblebees. PLoS One, 10(12), Article 0144544. https://doi.org/10.1371/journal.pone.0144544
Williams, C., Alstrup, A. K. O., Bertelsen, M., Leite, C. A. C. & Wang, T. (2016). Local anaesthetic? The systemic effect of subcutaneous lidocaine in Lithobates catebeianus. Abstract from SEB 2016 - Society for Experimental Biology, Brighton, Unknown.
Williams, C., Alstrup, A. K. O., Bertelsen, M. F., Jensen, H. M., Leite, C. A. C. & Wang, T. (2017). When local anesthesia becomes universal: Pronounced systemic effects of subcutaneous lidocaine in bullfrogs (Lithobates catesbeianus). Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 209, 41-46.
Williams, C., James, L., Leite, C., Monteiro, D., Bertelsen, M. & Wang, T. (2017). Physiological effects of morphine administration in the South American Rattlesnake. Acta Physiologica (Online), 219, 39-39. Article P-59. https://doi.org/10.1111/apha.12841
Williams, C., James, L., Alstrup, A. K. O., Leite, C., Bertelsen, M. & Wang, T. (2018). Bringing reptile welfare and high quality physiological research together. Poster session presented at Society of Experimental Biology conference 2018, Firenze, Italy.