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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Brodal, G. S., Fagerberg, R. & Jacob, R. (2002). Cache-Oblivious Search Trees via Binary Trees of Small Height. In Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms (pp. 39-48). Association for Computing Machinery.
Brodal, G. S., Fagerberg, R., Mailund, T., Pedersen, C. N. S. & Phillips, D. (2003). Speeding Up Neighbour-Joining Tree Construction. (Work package 5 ed.) ALCOM-FT.
Brodal, G. S., Fagerberg, R., Meyer, U. & Zeh, N. (2004). Cache-Oblivious Data Structures and Algorithms for Undirected Breadth-First Search and Shortest Paths. In T. Hagerup & J. Katajainen (Eds.), Algorithm Theory - SWAT 2004: 9th Scandinavian Workshop on Algorithm Theory, Humlebaek, Denmark, July 8-10, 2004. Proceedings (pp. 480-492). Springer. https://doi.org/10.1007/978-3-540-27810-8_41
Brodal, G. S., Fagerberg, R. & Moruz, G. (2004). On the Adaptiveness of Quicksort. BRICS Report Series, (RS-04-27).
Brodal, G. S., Fagerberg, R., Pedersen, C. N. S., Eades, P. (Ed.) & Takaoka, T. (Ed.) (2001). Computing the Quartet Distance Between Evolutionary Trees in Time O(n log² n). In Proceedings of Algorithms and Computation : 12th International Symposium, ISAAC 2001 (2223 of Lecture Notes in Computer Science ed., Vol. 2223/2001, pp. 731-742). Springer.
Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Östlin, A. (2001). The Complexity of Constructing Evolutionary Trees Using Experiments. In F. Orejas, P. G. Spirakis & J. van Leeuwen (Eds.), Automata, Languages and Programming: 28th International Colloquium, ICALP 2001 Crete, Greece, July 8–12, 2001 Proceedings (pp. 140-151). Springer. https://doi.org/10.1007/3-540-48224-5_12
Brodal, G. S., Fagerberg, R. & Vinther, K. (2004). Engineering a Cache-Oblivious Sorting Algorithm. In Proceedings of the Sixth Annual Workshop on Algorithm Engineering and Experiments, ALENEX '04 (pp. 4-17). Society for Industrial and Applied Mathematics.
Brodal, G. S., Fagerberg, R., Östlin, A., Pedersen, C. N. S. & Rao, S. S. (2003). Computing Refined Buneman Trees in Cubic Time. In G. Benson & R. Page (Eds.), Algorithms in Bioinformatics: Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003. Proceedings (pp. 259-270). Springer. https://doi.org/10.1007/978-3-540-39763-2_20
Brodal, G. S. & Jacob, R. (2002). Dynamic Planar Convex Hull. In Proceedings of the 43rd Annual IEEE Symposium on Foundations of Computer Science: (pp. 617-626). IEEE Press. https://doi.org/10.1109/SFCS.2002.1181875
Brodal, G. S. & Jacob, R. (2001). Time-dependent Networks as Models to Achieve Fast Exact Time-table Queries. Electronic Colloquium on Computational Complexity, 92(ALCOMFT-TR-01-176).
Brodal, G. S., Lagogiannis, G., Makris, C., Tsakalidis, A. & Tsichlas, K. (2003). Optimal Finger Search Trees in the Pointer Machine. Journal of Computer and System Sciences, 67(2), 381-418. https://doi.org/10.1016/S0022-0000(03)00013-8
Brodal, G. S., Lyngsø, R. B., Östlin, A. & Pedersen, C. N. S. (2002). Solving the String Statistics Problem in Time O(n log n). In P. Widmayer, S. Eidenbenz, F. Triguero, R. Morales, R. Conejo & M. Hennessy (Eds.), Automata, Languages and Programming: 29th International Colloquium, ICALP 2002 Málaga, Spain, July 8–13, 2002 Proceedings (pp. 728-739). Springer. https://doi.org/10.1007/3-540-45465-9_62
Brodal, G. S., Makris, C., Sioutas, S., Tsakalidis, A. K. & Tsichlas, K. (2002). Optimal Solutions for the Temporal Precedence Problem. Algorithmica, 33(4), 494-510. https://doi.org/10.1007/s00453-002-0935-z
Brodal, G. S. & Pinotti, M. C. (2001). Comparator Networks for Binary Heap Construction. Theoretical Computer Science, 250(1-2), 235-245. https://doi.org/10.1016/S0304-3975(99)00137-1
Buhrman, H., Miltersen, P. B., Radhakrishnan, J. & Venkatesh, S. (2002). Are Bitvectors Optimal? S I A M Journal on Computing, 31(6), 1723-1744. https://doi.org/10.1137/S0097539702405292
Byskov, J. M., Madsen, B. A. & Skjernaa, B. (2003). New Algorithms for Exact Satisfiability. BRICS Report Series, (RS-03-30).
Bødker, S. & Christiansen, E. (2002). Lost and Found in Flexibility. In K. Bødker, M. K. Pedersen, J. Simonsen & M. T. Vendelø (Eds.), Proceedings of the 25th Information Systems Research Seminar in Scandinavia Human-Computer Interaction Resource Network.
Bødker, S., Kristensen, J. F., Nielsen, C. & Sperschneider, W. (2003). Technology for Boundaries. In Proceedings of the 2003 international ACM SIGGROUP conference on Supporting group work (pp. 311-320). Association for Computing Machinery. https://doi.org/10.1145/958160.958210
Bødker, S. & Iversen, O. S. (2002). Staging a Professional Participatory Design Practice: Moving PD beyond the Initial Fascination of User Involvement. In O. W. Bertelsen (Ed.), Proceedings of the second Nordic conference on Human-computer interaction (pp. 11 - 18). Association for Computing Machinery. https://doi.org/10.1145/572020.572023
Büscher, M., Eriksen, M. A., Kristensen, J. F. & Mogensen, P. H. (2004). Ways of Grounding Imagination. In PDC 04 Proceedings of the eighth conference on Participatory design: Artful Integration: Interweaving Media, Materials and Practices (Vol. 1, pp. 193-203). Association for Computing Machinery. https://doi.org/10.1145/1011870.1011893
Büscher, M., Gill, S., Mogensen, P. H. & Shapiro, D. (2001). Landscapes of Practice: Bricolage as a Method for Situated Design. Computer Supported Cooperative Work (CSCW): The Journal of Collaborative Computing and Work Practices, 10(1), 1-28. https://doi.org/10.1023/A:1011293210539
Büscher, M., Hartswood, M., Mogensen, P. H., Procter, R., Shapiro, D., Slack, R. & Voss, A. (2002). Promises, Premises and Risks: Sharing Responsibilities, Working Up Trust and Sustaining Commitment in Participatory Design Projects. In Proceedings of PDC 2002
Büscher, M., Krogh, P., Mogensen, P. & Shapiro, D. (2001). Vision on the move - technologies for the footloose. Appliance Design, 1(1), 11-14.
Büscher, M., Mogensen, P. H. & Shapiro, D. (2002). Spaces of Practice. In W. Prinz, M. Jarke, Y. Rogers, K. Schmidt & V. Wulf (Eds.), Proceedings of the seventh conference on European Conference on Computer Supported Cooperative Work (pp. 139-158). Springer. https://doi.org/10.1007/0-306-48019-0_8
Cáccamo, M. J., Winskel, G., Boulton, R. J. (Ed.) & Jackson, P. B. (Ed.) (2001). A Higher-Order Calculus for Categories. In Lecture Notes in Computer Science: Theorem Proving in Higher Order Logics (Lecture Notes in Computer Science ed., Vol. 2152, pp. 136-153). Springer.
Cahill, V., Gray, E., Seigneur, J., Jensen, C., Chen, Y., Shand, B., Dimmock, N., Twigg, A., Bacon, J., English, C., Wagealla, W., Terzis, S., Nixon, P., Serugendo, G. D. M., Bryce, C., Carbone, M., Krukow, K. & Nielsen, M. (2003). Using trust for Secure Collaboration in Uncertain Environments. I E E E Pervasive Computing, 2(3), 52-61. https://doi.org/10.1109/MPRV.2003.1228527
Canetti, R., Damgård, I. B., Dziembowski, S., Ishai, Y. & Malkin, T. (2004). Adaptive versus Non-Adaptive Security of Multi-Party Protocols. Journal of Cryptology, 17(3), 153-207. https://doi.org/10.1007/s00145-004-0135-x
Canetti, R., Damgård, I. B., Dziembowski, S., Ishai, Y. & Malkin, T. (2001). On Adaptive vs. Non-adaptive Security of Multiparty Protocols. In B. Pfitzmann (Ed.), Advances in Cryptology --- EUROCRYPT 2001: International Conference on the Theory and Application of Cryptographic Techniques Innsbruck, Austria, May 6-10, 2001 Proceedings (pp. 262-279). Springer. https://doi.org/10.1007/3-540-44987-6_17
Carbone, M., Maffeis, S., Nestmann, U. (Ed.) & Panangaden, P. (Ed.) (2002). On the Expressive Power of Polyadic Synchronisation in π- calculus. In Electronic Notes in Theoretical Computer Science: CONCUR 2002 Satellite Workshops (68(2) of Electronic Notes in TCS ed., Vol. Expressiveness in Concurrency, pp. 3. artikel). Elsevier Science Publishers.
Carbone, M. & Maffeis, S. (2003). On the Expressive Power of Polyadic Synchronisation in Pi-Calculus. Nordic Journal of Computing, 10(2), 70-98.
Carbone, M., Nielsen, M. & Sassone, V. (2004). A Calculus for Trust Management. In K. Lodaya & M. Mahajan (Eds.), FSTTCS 2004: Foundations of Software Technology and Theoretical Computer Science: 24th International Conference, Chennai, India, December 16-18, 2004. Proceedings (pp. 161-173). Springer. https://doi.org/10.1007/978-3-540-30538-5_14
Carbone, M., Nielsen, M., Sassone, V., Cerone, A. (Ed.) & Lindsay, P. (Ed.) (2003). A Formal Model for Trust in Dynamic Networks. In First International Conference on Software Engineering and Formal Methods, 2003.Proceedings. (pp. 54-61). IEEE. https://doi.org/10.1109/SEFM.2003.1236207
Carbone, M., Nielsen, M. & Sassone, V. (2004). Trust in Global Computing. Association for Logic Programming Newsletter, 17(4).
Caspersen, M. E. (2003). An Inverted Curriculum for CS1. In Frontiers in Education, 2003. FIE 2003. 33rd Annual (Vol. 1). IEEE Press. https://doi.org/10.1109/FIE.2003.1263334
Caspersen, M. E. (2004). Discussant Submission. Paper presented at 3rd "Killer Examples" for Design Patterns and Objects First Workshop at OOPSLA 2004, Vancouver, British Columbia, Canada.
Caspersen, M. E. & Christensen, H. B. (2003). The Need for Killer Examples for Object-Oriented Frameworks. In OOPSLA Workshop "Killer Examples": Conference on Object Oriented Programming Systems Languages and Applications Association for Computing Machinery.
Cattani, G. L. & Winskel, G. (2003). Presheaf Models for CCS-like Languages. Theoretical Computer Science, 300(1-3), 47-89.
Cattani, G. L. & Winskel, G. (2004). Profunctors, Open Maps and Bisimulation. BRICS Report Series, (RS-04-22).
Christensen, A. S. (2003). Programanalyse - en metode til fejlfinding i software. In Aarhus Universitets Forskningsfonds Årsberetning 2002: Bidrag til forskningsformidlende bog/antologi (Vol. au01_2006_c6091f70-983b-11da-bee9-02004c4f4f50, pp. A-59). Aarhus Universitetsforlag.
Christensen, A. S. & Møller, A. (2002). JWIG User Manual. BRICS Notes Series, (NS-02-6).
Christensen, H. B. (2003). Software Testing Requires Variability. In J. van Gurp & J. Bosch (Eds.), Proceedings of Workshop on Software Variability Management (pp. 118-120). University of Groningen.
Christensen, H. B. (2003). Systematic Testing should not be a Topic in the Computer Science Curriculum! In D. Finkel (Ed.), Proceedings of 8th Annual Conference on Innovation and Technology in Computer Science Education: ITiCSE 2003 (pp. 7-10). Society for Industrial and Applied Mathematics. https://doi.org/10.1145/961511.961517
Christensen, H. B. (2001). Tracking Change in rapid and eXtreme Development: A Challenge to SCM-tools? In A. van der Hoek (Ed.), Proceedings of Tenth International Workshop on Software Configuration Management, SCM-10 (pp. 1-31). UCI. Machine Learning Repository. Center for Machine Learning and Intelligent Systems. http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.29.3055&rep=rep1&type=pdf
Christensen, H. B. (2002). Using Logic Programming to Detect Activities in Pervasive Healthcare. In P. J. Stuckey (Ed.), Logic Programming: 18th International Conference, ICLP 2002 Copenhagen, Denmark, July 29 – August 1, 2002 Proceedings (2401 ed., pp. 185-199). Springer. https://doi.org/10.1007/3-540-45619-8_29
Christensen, H. B. & Bardram, J. (2002). Supporting Human Activities - Exploring Activity-Centered Computing. In G. Borriello & L. E. Holmquist (Eds.), UbiComp 2002: Ubiquitous Computing: 4th International Conference Göteborg, Sweden, September 29 – October 1, 2002 Proceedings (pp. 107-116). Springer. https://doi.org/10.1007/3-540-45809-3_8
Christensen, M. (2003). WorkSPACE. Paper presented at Workspace Venezia 2003 - Shaping the future workspace - Essential Tools for the future, Venedig, Italy. http://e-locus.fundaciontekniker.com/venezia03/
Christensen, M. (2003). WorkSPACE: Augmenting the work environment through spatial artifacts. Paper presented at MILK Conference - Designing Work Spaces of the Future, Bruxelles, Belgium. http://www.milkforum.com

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Arias, C. A., Vera-Puerto, I. L. & Chaparro, T. R. (2023). Lecciones aprendidas. In K. Cross, K. Tondera, A. Rizzo, L. Andrews, B. Pucher, D. Istenič, N. Karres & R. McDonald (Eds.), Soluciones basadas en la naturaleza para el tratamiento de aguas residuales (pp. 332-337). IWA Publishing. https://doi.org/10.2166/9781789063035
Barfod, A. S., Pasgaard, M. & Svenning, J.-C. (2023). Livet på land: livet på land kræver gennemgribende samfundsforandringer. In S. Hildebrandt (Ed.), Det Bæredygtige Danmark. : med Verdensmålene mod 2030 (pp. 395-416). Djøf Forlag.
El-Saadi, M. I., Brzezinski, K., Hinz, A., Phillips, L., Wong, A., Gerber, L., Overgaard, J. & MacMillan, H. A. (2023). Locust gut epithelia do not become more permeable to fluorescent dextran and bacteria in the cold. Journal of Experimental Biology, 226(16), Article jeb246306. https://doi.org/10.1242/jeb.246306
Xu, S., Marcon, A., Bertelsen, R. J., Benediktsdottir, B., Brandt, J., Engemann, K., Frohn, L. M., Geels, C., Gislason, T., Heinrich, J., Holm, M., Janson, C., Markevych, I., Modig, L., Orru, H., Schlünssen, V., Sigsgaard, T. & Johannessen, A. (2023). Long-term exposure to low-level air pollution and greenness and mortality in Northern Europe: The Life-GAP project. Environment International, 181, Article 108257. https://doi.org/10.1016/j.envint.2023.108257
Bundgaard, A., Gruszczyk, A. V., Prag, H. A., Williams, C., McIntyre, A., Ruhr, I. M., James, A. M., Galli, G. L. J., Murphy, M. P. & Fago, A. (2023). Low production of mitochondrial reactive oxygen species after anoxia and reoxygenation in turtle hearts. Journal of Experimental Biology, 226(9), Article jeb245516. https://doi.org/10.1242/jeb.245516
ter Steege, H., Pitman, N. C. A., do Amaral, I. L., de Souza Coelho, L., de Almeida Matos, F. D., de Andrade Lima Filho, D., Salomão, R. P., Wittmann, F., Castilho, C. V., Guevara, J. E., Veiga Carim, M. D. J., Phillips, O. L., Magnusson, W. E., Sabatier, D., Revilla, J. D. C., Molino, J. F., Irume, M. V., Martins, M. P., da Silva Guimarães, J. R. ... Melgaço, K. (2023). Mapping density, diversity and species-richness of the Amazon tree flora. Communications Biology, 6(1), Article 1130. https://doi.org/10.1038/s42003-023-05514-6
Klein, J., Vestbo, S., Funch, P. & Anna, T. (2023). Marine Hitchhikers and Nested Holobionts: Is the Aquarium Trade Creating Weedy Sponge Invaders? In N. Bubandt, A. O. Andersen & R. Cypher (Eds.), Rubber Boots Methods for the Anthropocene: Doing Fieldwork in Multispecies Worlds (pp. 249-275). University of Minnesota Press.
Petersson Sjögren, M., Alsved, M., Šantl-Temkiv, T., Bjerring Kristensen, T. & Löndahl, J. (2023). Measurement report: Atmospheric fluorescent bioaerosol concentrations measured during 18 months in a coniferous forest in the south of Sweden. Atmospheric Chemistry and Physics, 23(9), 4977-4992. https://doi.org/10.5194/acp-23-4977-2023
Zhai, S., Zhang, D., Liu, W., Wang, B., Liang, B., Liu, C., Zeng, R., Hou, Y., Cheng, H. Y. & Wang, A. (2023). Microbial electrochemical technologies assisted nitrogen recovery from different wastewater sources: Performance, life cycle assessment, and challenges. Resources, Conservation & Recycling, 194, Article 107000. https://doi.org/10.1016/j.resconrec.2023.107000
Rysgaard, S. (2023). Microbial life in Arctic sea ice. Abstract from Tara Polar Drift, Paris, France.
Mueller, P., Kutzbach, L., Mozdzer, T. J., Jespersen, E., Barber, D. C. & Eller, F. (2023). Minerogenic salt marshes can function as important inorganic carbon stores. Limnology and Oceanography, 68(4), 942-952. https://doi.org/10.1002/lno.12322
Olsen, B. E., Normand, S., Svenning, J.-C., Timmermann, K., Kragh, T., Kaae, B. C., Madsen, N. & Strange, N. (2023). Mod robuste økosystemer: Anbefalinger til en dansk lov om biodiversitet. Biodiversitetsrådet.
Safi, A. U. R., Bendixen, E., Rahman, H., Khattak, B., Wu, W., Ullah, W., Khan, N., Ali, F., Yasin, N. & Qasim, M. (2023). Molecular identification and differential proteomics of drug resistant Salmonella Typhi. Diagnostic Microbiology and Infectious Disease, 105(4), Article 115883. https://doi.org/10.1016/j.diagmicrobio.2022.115883
Peripato, V., Levis, C., Moreira, G. A., Gamerman, D., Ter Steege, H., Pitman, N. C. A., de Souza, J. G., Iriarte, J., Robinson, M., Junqueira, A. B., Trindade, T. B., de Almeida, F. O., Moraes, C. D. P., Lombardo, U., Tamanaha, E. K., Maezumi, S. Y., Ometto, J. P. H. B., Braga, J. R. G., Campanharo, W. A. ... Aragão, L. E. O. C. (2023). More than 10,000 pre-Columbian earthworks are still hidden throughout Amazonia. Science, 382(6666), 103-109. https://doi.org/10.1126/science.ade2541
Bernard, C., Santos, G. S., Deere, J. A., Rodriguez-Caro, R., Capdevila, P., Kusch, E., Gascoigne, S. J. L., Jackson, J. & Salguero-Gómez, R. (2023). MOSAIC - A Unified Trait Database to Complement Structured Population Models. Scientific Data, 10(1), Article 335. https://doi.org/10.1038/s41597-023-02070-w
Hu, Y., Wei, F., Fu, B., Wang, S., Wang, L. & Chen, Y. (2023). Multifaceted characteristics of aridity changes and causal mechanisms in Chinese drylands. Progress in Physical Geography: Earth and Environment, 47(3), 438-453. https://doi.org/10.1177/03091333221129867
Knudsen, L., Heines, M., Colo, L., Ngcobo, S. & Pasgaard, M. (2023). My Mabopane: Opportunities of Photovoice to Support Inclusive Urban Green Space Engagement and Planning. In A. Osman, J. Nagle & S. Tripathi (Eds.), The Urban Ecologies of Divided Cities: UEDC 2022 (pp. 93-96). Springer. https://doi.org/10.1007/978-3-031-27308-7_16
Delavaux, C. S., Crowther, T. W., Zohner, C. M., Robmann, N. M., Lauber, T., van den Hoogen, J., Kuebbing, S., Liang, J., de-Miguel, S., Nabuurs, G. J., Reich, P. B., Abegg, M., Adou Yao, Y. C., Alberti, G., Almeyda Zambrano, A. M., Alvarado, B. V., Alvarez-Dávila, E., Alvarez-Loayza, P., Alves, L. F. ... Maynard, D. S. (2023). Native diversity buffers against severity of non-native tree invasions. Nature, 621(7980), 773-781. https://doi.org/10.1038/s41586-023-06440-7
Magalhães, A. R., Codeço, C. T., Svenning, J. C., Escobar, L. E., Van de Vuurst, P. & Gonçalves-Souza, T. (2023). Neglected tropical diseases risk correlates with poverty and early ecosystem destruction. Infectious Diseases of Poverty, 12(1), Article 32. https://doi.org/10.1186/s40249-023-01084-1
Li, L., Teng, S. N., Zhang, Y., Li, Y., Wang, H., Santana, J., Reino, L., Abades, S., Svenning, J. C. & Xu, C. (2023). Neighbourhood landscape context shapes local species richness patterns across continents. Global Ecology and Biogeography, 32(6), 867-880. https://doi.org/10.1111/geb.13668
Kalusová, V., Chytrý, M., Večeřa, M., Svenning, J. C., Biurrun, I., Kintrová, K., Agrillo, E., Carli, E., Ecker, K., Garbolino, E., Šibíková, M., Šilc, U. & Axmanová, I. (2023). Neophyte invasions in European heathlands and scrub. Biological Invasions, 25(6), 1739–1765. https://doi.org/10.1007/s10530-023-03005-7
Ávila-Thieme, M. I., Kusch, E., Corcoran, D., Castillo, S. P., Valdovinos, F. S., Navarrete, S. A. & Marquet, P. A. (2023). NetworkExtinction: An R package to simulate extinction propagation and rewiring potential in ecological networks. Methods in Ecology and Evolution, 14(8), 1952-1966. https://doi.org/10.1111/2041-210X.14126
Møllebjerg, A., Zarebska, A., Nielsen, H. B., Hansen, L. B. S., Sørensen, S. R., Seredynska-Sobecka, B., Villacorte, L. O., Gori, K., Palmén, L. G. & Meyer, R. L. (2023). Novel high-throughput screening platform identifies enzymes to tackle biofouling on reverse osmosis membranes. Desalination, 554, Article 116485. https://doi.org/10.1016/j.desal.2023.116485
Aticho, A., Beyene, A., Zelelew, S. A., Nigussie, A., Gutema, T. M., Bakkestuen, V. & Chala, D. (2023). Observed and projected changes in urbanization and nature conservation in a typical fast growing city of Ethiopia, Jimma. Biodiversity and Conservation, 32(12), 4007-4028. https://doi.org/10.1007/s10531-023-02680-1
Jacobsen, M. W., Nygaard, R., Hansen, B. K., Broberg, M., Hansen, M. M. & Nielsen, E. E. (2023). Observing the Arctic: A comparison of environmental DNA (eDNA) and electrofishing for monitoring Arctic char and Atlantic salmon. Environmental DNA, 5(4), 782-795. https://doi.org/10.1002/edn3.442