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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Plessis, A. D. & Vosegaard, H. (2001). Characterisation of strong smooth stability. Mathematica Scandinavica, 88(2), 193-228. http://www.mscand.dk/article.php?id=42
Ørsted, B. & Vargas, J. (2004). Restriction of square-integrable representations: discrete spectrum. Duke Mathematical Journal, 123(3), 609-633.
Agarwal, P., Arge, L., Erickson, J., Yu, H., Albers, S. (Ed.) & Radzik, T. (Ed.) (2004). Efficient Tradeoff Schemes in Data Structures for Querying Moving Objects. In Ikke angivet (3221 i Lecture Notes in Computer Science ed., pp. 4-15). Springer.
Agarwal, S. & Frandsen, G. S. (2004). Binary GCD like Algorithms for Some Complex Quadratic Rings. In D. Buell (Ed.), Algorithmic Number Theory: 6th International Symposium, ANTS-VI, Burlington, VT, USA, June 13-18, 2004, Proceedings (pp. 57-71). Springer. https://doi.org/10.1007/978-3-540-24847-7_4
Ager, M. S. (2004). From Natural Semantics to Abstract Machines. BRICS Report Series, (RS-04-20).
Ager, M. S., Biernacki, D., Danvy, O. & Midtgaard, J. (2003). A Functional Correspondence Between Evaluators and Abstract Machines. In K. Sagonas & D. Miller (Eds.), Proceedings of the 5th ACM SIGPLAN international conference on Principles and practice of declaritive programming (pp. 8-19). Association for Computing Machinery. https://doi.org/10.1145/888251.888254
Ager, M. S., Danvy, O. & Goldberg, M. (2002). A Symmetric Approach to Compilation and Decompilation. In T. Æ. Mogensen, D. Schmidt & H. Sudborough (Eds.), The Essence of Computation: Complexity, Analysis, Transformation (pp. 296-331). Springer. https://doi.org/10.1007/3-540-36377-7_14
Ager, M. S., Danvy, O. & Rohde, H. K. (2003). Fast Partial Evaluation of Pattern Matching in Strings. In Proceedings of the 2003 ACM SIGPLAN workshop on Partial evaluation and semantics-based program manipulation (pp. 3-9). Association for Computing Machinery. https://doi.org/10.1145/777388.777390
Ager, M. S., Danvy, O. & Rohde, H. K. (2002). On obtaining Knuth, Morris, and Pratt's string matcher by partial evaluation. In K. Asai (Ed.), ASIA-PEPM '02 Proceedings of the ASIAN symposium on Partial evaluation and semantics-based program manipulation (pp. 32-46). Association for Computing Machinery. https://doi.org/10.1145/568173.568177
Eriksen, M. A., Buscher, M. & Christensen, M. (2003). Grounded Imagination: Dialogue in Context. Paper presented at Fieldworks - Dialogues between Art and Anthropology, Tate Modern Gallery, London, United Kingdom. http://www.tate.org.uk/modern/eventseducation/fieldworks
Alstrup, S., Brodal, G. S., Gørtz, I. L. & Rauhe, T. (2001). Time and Space Efficient Multi-Method Dispatching. Electronic Colloquium on Computational Complexity, (ITU-TR-2001-8).
Alstrup, S., Brodal, G. S., Gørtz, I. L. & Rauhe, T. (2002). Time and Space Efficient Multi-Method Dispatching. In M. Penttonen & E. M. Schmidt (Eds.), Algorithm Theory — SWAT 2002: 8th Scandinavian Workshop on Algorithm Theory Turku, Finland, July 3–5, 2002 Proceedings (pp. 20-29). Springer. https://doi.org/10.1007/3-540-45471-3_3
Alstrup, S., Brodal, G. S. & Rauhe, T. (2001). Optimal Static Range Reporting in One Dimension. In Proceedings of the thirty-third annual ACM symposium on Theory of computing (pp. 476-482). Association for Computing Machinery. https://doi.org/10.1145/380752.380842
Amtoft, T., Consel, C., Danvy, O. & Malmkjær, K. (2001). The Abstraction and Instantiation of String-Matching Programs. BRICS Report Series, (RS-01-12).
Amtoft, T., Consel, C., Danvy, O. & Malmkjær, K. (2002). The Abstraction and Instantiation of String-Matching Programs. In T. Mogensen, D. Schmidt & H. Sudborough (Eds.), The Essence of Computation: Complexity, Analysis, Transformation (pp. 332-357). Springer. https://doi.org/10.1007/3-540-36377-7_15
Andersen, H. M. & Schultz, U. P. (2004). Declarative Specialization for Object-Oriented-Program Specialization. Paper presented at ACM SIGPLAN 2004 Symposium on Partial Eveluation and Program Manipulation (PEPM'04), Verona, Italy.
Andersen, J. R., Bak, L., Grarup, S., Lund, K. V., Eskildsen, T., Hansen, K. M. & Torgersen, M. (2004). Design, Implementation, and Evaluation of the Resilient Smalltalk Embedded Platform. In Proceedings of the 12th European Smalltalk User Group (ESUG) Conference
Arge, L. (2004). External Geometric Data Structures. In Computing and Combinatorics: 10th Annual International Conference, COCOON 2004, Jeju Island, Korea, August 17-20, 2004. Proceedings (pp. 1). Springer. https://doi.org/10.1007/978-3-540-27798-9_1
Arge, L., Brodal, G. S. & Toma, L. (2004). On External-Memory MST, SSP and Multi-Way Planar Graph Separation. Journal of Algorithms, 53(2), 186-206.
Arge, L., Meyer, U. & Toma, L. (2004). External Memory Algorithms for Diameter and All-Pair Shortest-Paths on Sparse Graphs. In J. Diaz, J. Karhumäki, A. Lepistö & D. Sannella (Eds.), Automata, Languages and Programming: 31st International Colloquium, ICALP 2004, Turku, Finland, July 12-16, 2004. Proceedings (pp. 146-157). Springer. https://doi.org/10.1007/978-3-540-27836-8_15
Arge, L., Samoladas, V. & Yi, K. (2004). Optimal External-Memory Planar Point Enclosure. In S. Albers & T. Radzik (Eds.), Algorithms - ESA 2004: 12th Annual European Symposium, Bergen, Norway, September 14-17, 2004. Proceedings (pp. 40-52). Springer.
Arge, L. & Toma, L. (2004). Simplified External Memory Algorithms for Planar DAGS. In Proceedings of the 9th Scandinavian Workshop on Algorithm Theory, Humlebaek, Denmark, July 8-10, 2004. (3111 i Lecture Notes in Computer Science ed., Vol. 3111/2004, pp. 493-503). Springer.
Arge, L. & Vahrenhold, J. (2004). I/O-Efficient Dynamic Planar Point Location. Computational Geometry, 29(2), 147-162. https://doi.org/10.1016/j.comgeo.2003.04.001
Astesiano, E., Bidoit, M., Krieg-Brückner, B., Mosses, P. D., Sannella, D. & Tarlecki, A. (2002). CASL: The Common Algebraic Specification Language. Theoretical Computer Science, 286(2), 153-196.
Balat, V. & Danvy, O. (2002). Memorization in Type-Directed Partial Evaluation. In D. Batory, C. Consel & W. Taha (Eds.), Generative Programming and Component Engineering: ACM SIGPLAN/SIGSOFT Conference, GPCE 2002 Pittsburgh, PA, USA, October 6–8, 2002 Proceedings (pp. 78-92). Springer. https://doi.org/10.1007/3-540-45821-2_5
Barak, B., Canetti, R., Nielsen, J. B., Pass, R. & IEEE (Ed.) (2004). Universally Composable Protocols with Relaxed Set-Up Assumptions. In Ikke angivet (pp. 186-195). IEEE Press.
Bardram, J. E. (2003). Hospitals of the Future - Ubiquitous Computing support for Medical Work in Hospitals. In J. E. Bardram, I. Korhonen, A. Mihailidis & D. Wan (Eds.), Ubicom 2003: Fifth International Conference on Ubiquitous Computing: Seattle, Washington, USA (Vol. ubicom2003, pp. Artikel 13). Ubicomp.
Bardram, J. E. & Christensen, H. B. (2001). Middleware for Pervasive Healthcare - A White Paper. In B. Guruduth (Ed.), Proceedings of Advanced Topic Workshop -- Middleware for Mobile Computing University of Arizona Press. http://www.cs.arizona.edu/mmc/Program.html
Bardram, J. E. (2004). Activity-Based Support for Mobility and Collaboration in Ubiquitous Computing. In L. Baresi, S. Dustdar, H. Gall & M. Matera (Eds.), Ubiquitous Mobile Information and Collaboration Systems (Lecture Notes in Computer Science ed., Vol. 3272, pp. 169-184). Springer.
Bardram, J. E. (2004). Applications of Context-Aware Computing in Hospital Work - Examples and Design Principles. In 2004 ACM Symposium on Applied Computing: Proceedings of the 2004 ACM symposium on Applied computing (Vol. SESSION: Ubiquitous computing (UC), pp. 1574-1579). Association for Computing Machinery.
Bardram, J. E. (2004). Special issue on Pervasive Healthcare. (8(3) of IEEE Trans. on Inf. Tech. in Biomedicine ed.) IEEE Press.
Bardram, J. E., Adlam, T. (Ed.), Wactlar, H. (Ed.) & Korhonen, I. (Ed.) (2004). The Personal Medical Unit - A Ubiquitous Computing Infrastructure for Personal Pervasive Healthcare. In UbiHealth 2004: The 3nd International Workshop on Ubiquitous Computing for Pervasive Healthcare Applications (Nottingham, England ) UbiComp.org Community.
Bardram, J. E., Bossen, C., Dourish, P. (Ed.), Fitzpatrick, G. (Ed.), Schmidt, K. (Ed.), Kuutti, K. (Ed.) & Karsten, E. H. (Ed.) (2003). Moving to get aHead: Local Mobility and Collaborative Work. In ECSCW' 03: Proceedings of the eighth conference on European Conference on Computer Supported Cooperative Work (Vol. ECSCW, pp. 355-374). Kluwer Academic Publishers.
Bardram, J. E., Bossen, C., Lykke-Olesen, A., Madsen, K. H., Nielsen, R. & MacDonald, N. (Ed.) (2002). Virtual Video Prototyping of Pervasive Healthcare Systems. In Proceedings of the conference on Designing interactive systems: processes, practices, methods, and techniques (pp. 167-177). Association for Computing Machinery.
Bardram, J. & Christensen, H. B. (2004). Open Issues in Activity-Based and Task-Level Computing. In Proceedings of First International Workshop on Computer Support for Human Tasks and Activities (PB-2004-60 of Cent. for Pervasive Comp. Tech. Rep ed., pp. 56-61). Aarhus Universitet.
Bardram, J. (Ed.), Christensen, H. B. (Ed.), Garlan, D. & Sousa, J. (2004). First International Workshop on Computer Support for Human Tasks and Activities. (PB-2004-60 ed.) Center for Pervasive Computing Tech. Report.
Bardram, J., Christensen, H. B. & Hansen, K. M. (2004). Architectural Prototyping: An Approach for Grounding Architectural Design and Learning. In Proceedings of the Fourth Working IEEE/IFIP Conference on Software Architecture: (Wisca 2004) (pp. 15-24). IEEE Computer Society Press.
Bardram, J. E., Kjær, T. A. K. & Nielsen, C. (2003). Supporting Local Mobility in Healthcare by Application Roaming among Heterogeneous Devices. In Lecture Notes in Computer Science: Proceedings of the Fifth International Conference on Human Computer Interaction with Mobile Devices and Services (Vol. 2795, pp. 161-176). Springer.
Bardram, J. E., Larsen, S. B., Mamykina, L. (Ed.), Bardram, J. E. (Ed.), Korhonen, I. (Ed.), Mynatt, E. D. (Ed.) & Pratt, W. (Ed.) (2004). Hopper's Home and Hopper's Hospital: Usability Laboratories for Home Care. In The CHI2004 workshop on HCI and Homecare: Connecting Families and Clinicians
Basin, D. A., Danvy, O. & Harper, R. (2004). Editorial. Higher-Order and Symbolic Computation, 17(3), 171-171. https://doi.org/10.1023/B:LISP.0000029480.20108.7d

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Rojano Doñate, L., Lamoni, L., Tougaard, J. & Findlay, C. R. (2023). Effect of Vessel Noise on Marine Mammals and Measures to Reduce Impact. In A. N. Popper, J. A. Sisneros, A. Hawkins & F. Thomsen (Eds.), The Effects of Noise on Aquatic Life: Principles and Practical Considerations Springer. https://doi.org/10.1007/978-3-031-10417-6_138-1
Janyasupab, P., Brix, H. & Jampeetong, A. (2023). Effects of Longan Biochar as Filter Materials on Plant Responses and Wastewater Treatment by Typha angustifolia L. Natural and Life Sciences Communications, 22(3), Article e2023035. https://doi.org/10.12982/NLSC.2023.035
Tougaard, J., Griffiths, E. T., Ladegaard, M., Findlay, C. R., Cosentino, M., Sveegaard, S., Kyhn, L. A., Carlström, J., Owen, K. & Eriksson, P. (2023). Effects of rerouting shipping lanes in Kattegat on the underwater soundscape: Report to the Danish Environmental Protection Agency on EMFF project TANGO. Aarhus University, DCE - Danish Centre for Environment and Energy. Scientific Report from DCE - Danish Centre for Environment and Energy No. 535 http://dce2.au.dk/pub/SR535.pdf
Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N. ... Zhang, G. (2023). Eighty million years of rapid evolution of the primate Y chromosome. Nature Ecology & Evolution, 7(7), 1114-1130. https://doi.org/10.1038/s41559-022-01974-x
Lustermans, J. (2023). Electric interactions with cable bacteria: Community studies of flocking bactera. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Gordon, C. E., Greve, M., Henley, M., Bedetti, A., Allin, P. & Svenning, J. C. (2023). Elephant rewilding affects landscape openness and fauna habitat across a 92-year period. Ecological Applications, 33(3), Article e2810. https://doi.org/10.1002/eap.2810
Glarou, M., Gero, S., Frantzis, A., Brotons, J. M., Vivier, F., Alexiadou, P., Cerdà, M., Pirotta, E. & Christiansen, F. (2023). Estimating body mass of sperm whales from aerial photographs. Marine Mammal Science, 39(1), 251-273. https://doi.org/10.1111/mms.12982
Charlton, C., Christiansen, F., Ward, R., Mackay, A. I., Andrews-Goff, V., Zerbini, A. N., Childerhouse, S., Guggenheimer, S., O'Shannessy, B. & Brownell, R. L. (2023). Evaluating short- to medium-term effects of implantable satellite tags on southern right whales Eubalaena australis. Diseases of Aquatic Organisms, 155, 125-140. https://doi.org/10.3354/dao03730
Hordijk, I., Maynard, D. S., Hart, S. P., Lidong, M., ter Steege, H., Liang, J., de-Miguel, S., Nabuurs, G. J., Reich, P. B., Abegg, M., Adou Yao, C. Y., Alberti, G., Almeyda Zambrano, A. M., Alvarado, B. V., Esteban, A. D., Alvarez-Loayza, P., Alves, L. F., Ammer, C., Antón-Fernández, C. ... Evenness mediates the global relationship between forest productivity and richness (2023). Evenness mediates the global relationship between forest productivity and richness. Journal of Ecology, 111(6), 1308-1326. https://doi.org/10.1111/1365-2745.14098
Joyce, W., Warwicker, J., Shiels, H. A. & Perry, S. F. (2023). Evolution and divergence of teleost adrenergic receptors: why sometimes 'the drugs don't work' in fish. Journal of Experimental Biology, 226(19), Article jeb245859. https://doi.org/10.1242/jeb.245859
Natarajan, C., Signore, A. V., M. Bautista, N., Hoffmann, F. G., Tame, J. R. H., Fago, A. & Storz, J. F. (2023). Evolution and molecular basis of a novel allosteric property of crocodilian hemoglobin. Current Biology, 33(1), 98-108.e4. https://doi.org/10.1016/j.cub.2022.11.049
Rose, C. (2023). Evolutionary ecology of intra- and inter-specific interactions in spiders. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Gunner, R. M., Wilson, R. P., Holton, M. D., Bennett, N. C., Alagaili, A. N., Bertelsen, M. F., Mohammed, O. B., Wang, T., Manger, P. R., Ismael, K. & Scantlebury, D. M. (2023). Examination of head versus body heading may help clarify the extent to which animal movement pathways are structured by environmental cues? Movement Ecology, 11(1), Article 71. https://doi.org/10.1186/s40462-023-00432-y
Nielsen, H. M., Kristensen, T. N., Sahana, G., Laursen, S. F., Bahrndorff, S., Sørensen, J. G. & Hansen, L. S. (2023). Expected response to selection on larval size and development time in the housefly (Musca domestica). Abstract from
74th Annual Meeting of European Federation of Animal Science, Lyon, France.
Smith, B., Crossley, J. L., Conner, J., Elsey, R. M., Wang, T. & Crossley, D. A. (2023). Exposure to hypoxia during embryonic development affects blood flow patterns and heart rate in juvenile American alligators during digestion. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 282, Article 111440. https://doi.org/10.1016/j.cbpa.2023.111440
Porras, M. F., Navas, C. A., Agudelo-Cantero, G. A., Santiago-Martínez, M. G., Loeschcke, V., Sørensen, J. G., Crandall, S. G., Biddinger, D. & Rajotte, E. G. (2023). Extreme heat alters the performance of hosts and pathogen. Frontiers in Ecology and Evolution, 11, Article 1186452. https://doi.org/10.3389/fevo.2023.1186452
Araujo, N. D. S., Perez, R., Willot, Q., Defrance, M. & Aron, S. (2023). Facing lethal temperatures: Heat-shock response in desert and temperate ants. Ecology and Evolution, 13(9), Article e10438. https://doi.org/10.1002/ece3.10438
Funch, P., Kealy, R. A., Goldstein, J., Brewer, J. R., Solovyeva, V. & Riisgård, H. U. (2023). Fate of microplastic captured in the marine demosponge Halichondria panicea. Marine Pollution Bulletin, 194(Part A), Article 115403. https://doi.org/10.1016/j.marpolbul.2023.115403
Pearce, E. A. (2023). Forests before Homo sapiens. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Mendes, S. B., Olesen, J. M., Timóteo, S. & Heleno, R. (2023). Fruiting phenology matters. Plants People Planet, 5(3), 324-328. https://doi.org/10.1002/ppp3.10359
Hansen, M. M. & Tengstedt, A. N. B. (2023). Gamle og nye gåder om den europæiske ål. In Havets Mysterier: myter, virkelighed og videnskab (pp. 235-243). Fiskeri- og Søfartsmuseets Forlag.
Sørensen, E. F., Harris, R. A., Zhang, L., Raveendran, M., Kuderna, L. F. K., Walker, J. A., Storer, J. M., Kuhlwilm, M., Fontsere, C., Seshadri, L., Bergey, C. M., Burrell, A. S., Bergman, J., Phillips-Conroy, J. E., Shiferaw, F., Chiou, K. L., Chuma, I. S., Keyyu, J. D., Fischer, J. ... Rogers, J. (2023). Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons. Science (New York, N.Y.), 380(6648), Article eabn8153. https://doi.org/10.1126/science.abn8153
Vidal, J. M., Fonseca, A., Ruiz, P., Sepúlveda, D., Carrasco, C., Scilipoti, S., Barros, J., Valenzuela, A., Saavedra, R., Ruiz-Tagle, N. & Urrutia, H. (2023). Genomic features of Pseudomonas sp. RGM2144 correlates with increased survival of rainbow trout infected by Flavobacterium psychrophilum. Journal of Fish Diseases, 46(1), 1-15. https://doi.org/10.1111/jfd.13713
Correa, D. F., Stevenson, P. R., Umaña, M. N., Coelho, L. D. S., Lima Filho, D. D. A., Salomão, R. P., Amaral, I. L. D., Wittmann, F., Matos, F. D. D. A., Castilho, C. V., Phillips, O. L., Guevara, J. E., Carim, M. D. J. V., Magnusson, W. E., Sabatier, D., Molino, J. F., Irume, M. V., Martins, M. P., Guimarães, J. R. D. S. ... ter Steege, H. (2023). Geographic patterns of tree dispersal modes in Amazonia and their ecological correlates. Global Ecology and Biogeography, 32(1), 49-69. https://doi.org/10.1111/geb.13596
Klassen, L., Rasmussen, U. L., Kveiborg, J., Richards, M. P., Orlando, L., Svenning, J.-C., Ritchie, K., Andreasen, M. H., Philippsen, B., Iversen, R. & Johannsen, N. N. (2023). Ginnerup revisited: New excavations at a key Neolithic site on Djursland, Denmark. Journal of Neolithic Archaeology, 25, 35–65. https://doi.org/10.12766/jna.2023.2
Xu, W. B., Guo, W. Y., Serra-Diaz, J. M., Schrodt, F., Eiserhardt, W. L., Enquist, B. J., Maitner, B. S., Merow, C., Violle, C., Anand, M., Belluau, M., Bruun, H. H., Byun, C., Catford, J. A., Cerabolini, B. E. L., Chacón-Madrigal, E., Ciccarelli, D., Cornelissen, J. H. C., Dang-Le, A. T. ... Ordonez, A. (2023). Global beta-diversity of angiosperm trees is shaped by Quaternary climate change. Science Advances, 9(14), eadd8553. Article eadd8553. https://doi.org/10.1126/sciadv.add8553