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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Maikawa, C. L., Smith, A. A. A., Zou, L., Roth, G. A., Gale, E. C., Stapleton, L. M., Baker, S. W., Mann, J. L., Yu, A. C., Correa, S., Grosskopf, A. K., Liong, C. S., Meis, C. M., Chan, D., Troxell, M., Maahs, D. M., Buckingham, B. A., Webber, M. J. & Appel, E. A. (2020). A co-formulation of supramolecularly stabilized insulin and pramlintide enhances mealtime glucagon suppression in diabetic pigs. Nature Biomedical Engineering, 4(5), 507-517. https://doi.org/10.1038/s41551-020-0555-4
Schindler, S. (2018). A coherentist conception of ad hoc hypotheses. Studies in History and Philosophy of Science Part A, 67, 54–64. https://doi.org/10.1016/j.shpsa.2017.11.011
Kallmeyer, J., Ferdelman, TG., Weber, A., Fossing, H. & Jørgensen, BB. (2004). A cold chromium distillation procedure for radiolabeled sulfide applied to sulfate reduction measurements. Limnology and Oceanography: Methods, 2, 171-180.
Dörler, D., Kragh, G., Luís, C., Grossberndt, S. & Brounéus, F. (2022). A Collaborative Endeavour to Develop Criteria for Citizen Science Platforms. Abstract from Engaging Citizen Science, Aarhus, Denmark.
Meldgaard Madsen, L., Boyd, J., McLachlan, P. J., Thompson, J. & Binley, A. (2022). A collection of Jupyter Notebooks for coupled hydrogeophysical inversion of geophysical monitoring data. In GELMON 2022 6th International Workshop on Geoelectric Monitoring : Book of Abstracts (pp. 9) https://opac.geologie.ac.at/ais312/dokumente/BR0144.pdf
García-Soto, I., Andersen, S. U., Monroy-Morales, E., Robledo-Gamboa, M., Guadarrama, J., Aviles-Baltazar, N. Y., Serrano, M., Stougaard, J. & Montiel, J. (2024). A collection of novel Lotus japonicus LORE1 mutants perturbed in the nodulation program induced by the Agrobacterium pusense strain IRBG74. Frontiers in Plant Science, 14, Article 1326766. https://doi.org/10.3389/fpls.2023.1326766
Amersek, I., Hercog, A., Svetlicic, J. & Arias, C. A. (2016). A combination of forced aerated horizontal flow and vertical flow wetland for the treatment of landfill leacheate. In M. Gajewska, K. Matej-Lukowicz & E. Wojciechowska (Eds.), Proceedings of the 15th IWA international Conference on Wetland Systems for Water Pollution Control (Vol. 1, pp. 43-44)
Dolatshahi-Pirouz, A., Nikkhah, M., Gaharwar, A. K., Hashmi, B., Guermani, E., Aliabadi, H., Camci-Unal, G., Ferrante, T., Foss, M., Ingber, D. E. & Khademhosseini, A. (2014). A combinatorial cell-laden gel microarray for inducing osteogenic differentiation of human mesenchymal stem cells. Scientific Reports, 4, Article 3896. https://doi.org/10.1038/srep03896
Kumar, S., Duflot, D., Hoffmann, S. V., Jones, N. C., Bolognesi, P., Carlini, L., Richter, R., Avaldi, L., Brunger, M. J. & Limao-Vieira, P. (2021). A combined experimental and theoretical study of the lowest-lying valence, Rydberg and ionic electronic states of 2,4,6-trichloroanisole. Journal of Quantitative Spectroscopy & Radiative Transfer, 271, Article 107751. https://doi.org/10.1016/j.jqsrt.2021.107751
Underwood, R., Gardiner, T., Finlayson, A., Few, J., Wilkinson, J., Bell, S., Merrison, J., Iverson, J. J. & de Podesta, M. (2015). A combined non-contact acoustic thermometer and infrared hygrometer for atmospheric measurements. Meteorological Applications, 22(Suppl. S1), 830-835. https://doi.org/10.1002/met.1513
Palmer, M. H., Coreno, M., De Simone, M., Hoffmann, S. V., Jones, N. C., Grazioli, C., Peterson, K., Baiardi, A., Zhang, T. & Biczysko, M. (2017). A combined theoretical and experimental study of the ionic states of iodopentafluorobenzene. The Journal of Chemical Physics, 146(8), Article 084302. https://doi.org/10.1063/1.4975672
Palmer, M. H., Hoffmann, S. V., Jones, N. C., Coreno, M., De Simone, M., Grazioli, C., Peterson, K., Baiardi, A., Zhang, T. & Biczysko, M. (2017). A combined theoretical and experimental study of the valence and Rydberg states of iodopentafluorobenzene. The Journal of Chemical Physics, 146(17), Article 174301. https://doi.org/10.1063/1.4981919
Christiansen, F. (1984). A comment on fitness estimation. Evolution, 38, 699–700.
Thorgeirsson, T. E., Gudbjartsson, D. F., Sulem, P., Besenbacher, S., Styrkarsdottir, U., Thorleifsson, G., Walters, G. B., Furberg, H., Sullivan, P. F., Marchini, J., McCarthy, M. I., Steinthorsdottir, V., Thorsteinsdottir, U., Stefansson, K. & TAG Consortium (2013). A common biological basis of obesity and nicotine addiction. Translational Psychiatry, 3, e308. https://doi.org/10.1038/tp.2013.81
Dethlefsen, C. & Højsgaard, S. (2005). A Common Platform for Graphical Models in R: The gRbase Package. Journal of Statistical Software, 14(17), 1-12.
Hartney, J. M., Stidham, T., Goldstrohm, D. A., Oberley-Deegan, R. E., Weaver, M. R., Valnickova-Hansen, Z., Scavenius, C., Benninger, R. K. P., Leahy, K. F., Johnson, R., Gally, F., Kosmider, B., Zimmermann, A. K., Enghild, J. J., Nozik-Grayck, E. & Bowler, R. P. (2014). A Common Polymorphism in EC-SOD Affects Cardiopulmonary Disease Risk by Altering Protein Distribution. Circulation. Cardiovascular Genetics (Online), 7(6), 659-666. https://doi.org/10.1161/CIRCGENETICS.113.000504
Lund, M. S., de Ross, S. PW., de Vries, A. G., Druet, T., Ducrocq, V., Fritz, S., Guillaume, F., Guldbrandtsen, B., Liu, Z., Reents, R., Schrooten, C., Seefried, F. & Guosheng, S. (2011). A common reference population from four European Holstein populations increases reliability of genomic predictions. Genetics Selection Evolution, 43(43), 1-28. https://doi.org/10.1186/1297-9686-43-43
Brodal, G. S. & Husfeldt, T. (1996). A Communication Complexity Proof that Symmetric Functions have Logarithmic Depth. Department of Computer Science, Aarhus University. BRICS Report Series No. 96-1 http://www.brics.dk/RS/96/1/BRICS-RS-96-1.pdf
Schuettpelz, E., Schneider, H., Smith, A. R., Hovenkamp, P., Prado, J., Rouhan, G., Salino, A., Sundue, M., Almeida, T. E., Parris, B., Sessa, E. B., Field, A. R., de Gasper, A. L., Rothfels, C. J., Windham, M. D., Lehnert, M., Dauphin, B., Ebihara, A., Lehtonen, S. ... The Pteridophyte Phylogeny Group (2016). A community-derived classification for extant lycophytes and ferns. Journal of Systematics and Evolution, 54(6), 563-603. https://doi.org/10.1111/jse.12229
Walter, P., Dippel, A. C., Pflaum, K., Wernecke, J., Van Den Hurk, J., Blume, J. & Klemradt, U. (2015). A compact and low-weight sputtering unit for in situ investigations of thin film growth at synchrotron radiation beamlines. Review of Scientific Instruments, 86(5), Article 053906. https://doi.org/10.1063/1.4918620
Schomas, D., Rendler, N., Krull, J., Richter, R. & Mudrich, M. (2017). A compact design for velocity-map imaging of energetic electrons and ions. Journal of Chemical Physics, 147(1), 013942. Article 013942. https://doi.org/10.1063/1.4984076
Deyerl, H.-J., Peucheret, C., Zsigri, B., Floreani, F., Plougmann, N., Hewlett, S. J., Kristensen, M. & Jeppesen, P. (2005). A compact low dispersion fibre Bragg grating with high detuning tolerance for advanced modulation formats. Optics Communications, (247), 93-100.
Mathisen, A., Krogh, S., Stisen, A., Blunck, H. & Grønbæk, K. (2016). A comparative analysis of Indoor WiFi Positioning at a large building complex. In J. J. G. Domínguez, Á. H. Alonso & J. Ureña Ureña (Eds.), 2016 International Conference on Indoor Positioning and Indoor Navigation, IPIN 2016 Article 7743666 IEEE Press. https://doi.org/10.1109/IPIN.2016.7743666
Danzmann, R. G., Cairney, M., Davidson, W. S., Ferguson, M. M., Gharbi, K., Guyomard, R., Holm, L.-E., Leder, E., Okamoto, N., Ozaki, A., Rexroad, C. E., Sakamoto, T., Taggart, J. B. & Woram, R. A. (2005). A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family (subfamily: Salmoninae). Genome, 48(6), 1037-1051. http://www.swetswise.com/eAccess/viewAbstract.do?articleID=26113819
Pedersen, M. W., Ginolhac, A., Orlando, L. A. A., Olsen, J., Andersen, K., Holm, J., Funder, S. V., Willerslev, E. & Kjær, K. H. (2013). A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa. Quaternary Science Reviews, 75, 161-168. https://doi.org/10.1016/j.quascirev.2013.06.006
Lemay, J.-C., Dong, Y., Groves, M. N., Demers-Carpentier, V., Goubert, G., Lafleur-Lambert, R., Boukouvalas, J., Hammer, B. & McBreen, P. H. (2016). A comparative study of diastereomeric complexes formed by a prochiral substrate and three structurally analogous chiral molecules on Pt(111). Surface Science, 646, 13-18. https://doi.org/10.1016/j.susc.2015.11.018
Bouvin, N. O., Brodersen, A. C., Bødker, S., Hansen, F. A. & Klokmose, C. N. (2006). A comparative study of map use. In Proceedings of CHI '06: CHI '06 extended abstracts on Human Factors in Computing Systems (pp. 592-597). ACM Spring Proceedings. https://doi.org/10.1145/1125451.1125575

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Gallegos, A., Aguilar, L., Campos, I., Caro, P., Sahuquillo, S., Perez, C., Arias, C. A., Montoya, J. & Morato, J. (2016). TIC para la determinación de los parámetros operacionales de humedales construidos diseñados para el tratamiento de aguas contaminadas por nitratos. Revista Ingenierías, 15(28), 53-70. https://doi.org/10.22395/rium
Zinke, L. A., Mullis, M. M., Bird, J. T., Marshall, I. P. G., Jørgensen, B. B., Lloyd, K. G., Amend, J. P. & Reese, B. K. (2017). Thriving or Surviving? Evaluating active microbial guilds in Baltic Sea sediment. Environmental Microbiology Reports, 9(5), 528-536. https://doi.org/10.1111/1758-2229.12578
Ewers, R. M., Orme, C. D. L., Pearse, W. D., Zulkifli, N., Yvon-Durocher, G., Yusah, K. M., Yoh, N., Yeo, D. C. J., Wong, A., Williamson, J., Wilkinson, C. L., Wiederkehr, F., Webber, B. L., Wearn, O. R., Wai, L., Vollans, M., Twining, J. P., Turner, E. C., Tobias, J. A. ... Banks-Leite, C. (2024). Thresholds for adding degraded tropical forest to the conservation estate. Nature, 631(8022), 808-813. https://doi.org/10.1038/s41586-024-07657-w
Napiroon, T., Balslev, H., Poopath, M., Chamchumroon, V., Vajrodaya, S. & Chayamarit, K. (2018). Three new taxa and a new record of Lasianthus (Rubiaceae) in Thailand. Annales Botanici Fennici, 55(4-6), 207-216. https://doi.org/10.5735/085.055.0402
Gooday, A. J., Holzmann, M., Goetz, E., Cedhagen, T., Korsun, S. & Pawlowski, J. (2021). Three new species of Gromia (Protista, Rhizaria) from western Greenland fjords. Polar Biology, 44(6), 1037–1053 . https://doi.org/10.1007/s00300-021-02858-9
Rothe, N., Gooday, A. J., Cedhagen, T., Fahrni, J., Hughes, J. A., Page, A., Pearce, R. B. & Pawlowski, J. (2009). Three new species of deep-sea Gromia (Protista, Rhizaria) from the bathyal and abyssal Weddell Sea, Antarctica. Zoological Journal of the Linnean Society , 157, 451-469.
Borchsenius, F. & Balslev, H. (1989). Three new species of Aiphanes (Palmae) with notes on the genus in Ecuador. Nordic Journal of Botany, 9, 383-393.
Jaramillo-Vivanco, T., Balslev, H., Montúfar, R., Cámara, R. M., Giampieri, F., Battino, M., Cámara, M. & Alvarez-Suarez, J. M. (2022). Three Amazonian palms as underestimated and little-known sources of nutrients, bioactive compounds and edible insects. Food Chemistry, 372, Article 131273. https://doi.org/10.1016/j.foodchem.2021.131273
Mantoani, M. C., Martins, J. A., Martins, L. D., Carotenuto, F., Šantl-Temkiv, T., Morris, C. E., Rodrigues, F. & Gonçalves, F. L. T. (2023). Thirty-Five Years of Aerosol–PBAP in situ Research in Brazil: The Need to Think outside the Amazonian Box. Climate, 11(1), Article 17. https://doi.org/10.3390/cli11010017
Jørgensen, BB. & Gallardo, VA. (1999). Thioploca spp: filamentous sulfur bacteria with nitrate vacuoles. FEMS Microbiology Ecology, 28(4), 301-313.
Magnuson, E., Mykytczuk, N. C. S., Pellerin, A., Goordial, J., Twine, S. M., Wing, B., Foote, S. J., Fulton, K. & Whyte, L. G. (2021). Thiomicrorhabdus streamers and sulfur cycling in perennial hypersaline cold springs in the Canadian high Arctic. Environmental Microbiology, 23(7), 3384-3400. https://doi.org/10.1111/1462-2920.14916
Amdahl, M. B., Petersen, E. E., Bocian, K., Kaliszuk, S. J., DeMartino, A. W., Tiwari, S., Sparacino-Watkins, C. E., Corti, P., Rose, J. J., Gladwin, M. T., Fago, A. & Tejero, J. (2019). The Zebrafish Cytochrome b(5)/Cytochrome b(5) Reductase/NADH System Efficiently Reduces Cytoglobins 1 and 2: Conserved Activity of Cytochrome b(5)/Cytochrome b(5) Reductases during Vertebrate Evolution. Biochemistry, 58(29), 3212-3223. https://doi.org/10.1021/acs.biochem.9b00406
Lange, R., Massling, A., Santl-Temkiv, T., Löndahl, J. & Gosewinkel, U. B. (2016). The viability state of airborne bacteria. Abstract from The Annual Congress of The Danish Microbiological Society - Copenhagen, Denmark, Copenhagen, Denmark.
Ni, X., Liao, S., Tan, S., Peng, Y., Wang, D., Yue, K., Wu, F. & Yang, Y. (2020). The vertical distribution and control of microbial necromass carbon in forest soils. Global Ecology and Biogeography, 29(10), 1829-1839. https://doi.org/10.1111/geb.13159
Barfod, A. S., Borgtoft Pedersen, H. & Bergmann, B. (1990). The vegetable ivory is still alive and doing fine in Ecuador. Economic Botany, 44(3), 293-400.
Hansen, L. M. B. & Wang, T. (2021). The vasopressor action of angiotensin II (ANG II) in ball pythons (Python regius). Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 252, Article 110839. https://doi.org/10.1016/j.cbpa.2020.110839
Meseguer, M., Herrero, J., Tejera, A., Hilligsøe, K. M., Ramsing, N. B. & Remoh, J. (2011). The use of morphokinetics as a predictor of embryo implantation. Human Reproduction, 26(10), 2658-2671. https://doi.org/10.1093/humrep/der256
Brix, H. (1990). The Use of Macrophytes in Water Pollution Control: Newsletter. The Botanical Institute, Aarhus University.
Lykke, A. M. (2004). The use of local knowledge in applied ecological research. A science that matters. Poster session presented at The use of local knowledge in applied ecological research. A science that matters.
Luo, M., Xu, Z., Hirsch, T., Aung, T. S., Xu, W., Ji, L., Qin, H. & Ma, K. (2021). The use of Global Biodiversity Information Facility (GBIF)-mediated data in publications written in Chinese. Global Ecology and Conservation, 25, Article e01406. https://doi.org/10.1016/j.gecco.2020.e01406
Brix, H. (2004). The use of constructed wetlands for on-site treatment of wastewater. Paper presented at Utrecht, 25-30 July, 2004.
Pertoldi, C. & Topping, C. (2004). The use of agent-based modelling of genetics in conservation genetic studies. Journal for Nature Conservation, 12, 111-120.
Lyngby, J. E. & Brix, H. (1984). The uptake of heavy metals in eelgrass (Zostera marina L.) and their effects on growth. Ecological Bulletin (Stockholm), 36, 81-89.
Takahashi, K., Lee, Y., Fago, A., Bautista, N. M., Storz, J. F., Kawamoto, A., Kurisu, G., Nishizawa, T. & Tame, J. R. H. (2024). The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM. Nature Communications, 15(1), Article 6505. https://doi.org/10.1038/s41467-024-49947-x
Prevéy, J., Elmendorf, S., Bjorkman, A., Alatalo, J., Ashton, I., Assmann, J., Björk, R. G., Björkman, M. P., Cannone, N., Carbognani, M., Chisholm, C., Clark, K., Collins, C., Cooper, E. J., Elberling, B., Frei, E., Henry, G. H. R., Hollister, R. D., Høye, T. ... Yang, Y. (2022). The tundra phenology database: More than two decades of tundra phenology responses to climate change. Arctic Science, 8(3), 1026–1039. https://doi.org/10.1139/AS-2020-0041
Hylleberg, J. (2000). The Tropical Marine Mollusc Programme (TMMP). Activities during 1999. Phuket Marine Biological Center. Special Publications, 21(1), 285-310.
Bilde, T., Lubin, Y., Smith, D., Schneider, J. M. & Maklakov, A. A. (2005). The transition to social inbred mating systems in spiders: role of inbreeding tolerance in a subsocial predecessor. Evolution, 59(1), 160-174.
Bechsgaard, J. S., Castric, V., Charlesworth, D., Vekemans, X. & Schierup, M. H. (2006). The transition to self-compatibility in Arabidopsis thaliana and evolution within S-haplotypes over 10 Myr. Molecular Biology and Evolution, 23(9), 1741-1750.