Aarhus University Seal

Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

Sort by: Date | Author | Title

Das Mahapatra, K., Pasquali, L., Søndergaard, J. N., Lapins, J., Nemeth, I. B., Baltás, E., Kemény, L., Homey, B., Moldovan, L. I., Kjems, J., Kutter, C., Sonkoly, E., Kristensen, L. S. & Pivarcsi, A. (2020). A comprehensive analysis of coding and non-coding transcriptomic changes in cutaneous squamous cell carcinoma. Scientific Reports, 10, Article 3637. https://doi.org/10.1038/s41598-020-59660-6
Freitas, G. P., Kojoj, J., Mavis, C., Creamean, J., Mattsson, F., Nilsson, L., Schmidt, J. S., Adachi, K., Šantl-Temkiv, T., Ahlberg, E., Mohr, C., Riipinen, I. & Zieger, P. (2024). A comprehensive characterisation of natural aerosol sources in the high Arctic during the onset of sea ice melt. Faraday Discussions, 258, 120-146. https://doi.org/10.1039/d4fd00162a
Palkopoulou, E., Lipson, M., Mallick, S., Nielsen, S., Rohland, N., Baleka, S., Karpinski, E., Ivancevic, A. M., To, T.-H., Kortschak, R. D., Raison, J. M., Qu, Z., Chin, T.-J., Alt, K. W., Claesson, S., Dalén, L., MacPhee, R. D. E., Meller, H., Roca, A. L. ... Reich, D. (2018). A comprehensive genomic history of extinct and living elephants. Proceedings of the National Academy of Sciences (PNAS), 115(11), E2566-E2574. https://doi.org/10.1073/pnas.1720554115
Baker, W. J., Bailey, P., Barber, V., Barker, A., Bellot, S., Bishop, D., Botigué, L. R., Brewer, G., Carruthers, T., Clarkson, J. J., Cook, J., Cowan, R. S., Dodsworth, S., Epitawalage, N., Françoso, E., Gallego, B., Johnson, M. G., Kim, J. T., Leempoel, K. ... Forest, F. (2022). A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life. Systematic Biology, 71(2), 301-319. https://doi.org/10.1093/sysbio/syab035
Olliges-Stadler, I., Rossell, M. D., Süess, M. J., Ludi, B., Bunk, O., Pedersen, J. S., Birkedal, H. & Niederberger, M. (2013). A comprehensive study of the crystallization mechanism involved in the nonaqueous formation of tungstite. Nanoscale, 5(18), 8517-8525. https://doi.org/10.1039/c3nr02020g
Zwintz, K., Moravveji, E., Papics, P. I., Tkachenko, A., Przybilla, N., Nieva, M. .-F., Kuschnig, R., Antoci, V., Lorenz, D., Themessl, N., Fossati, L. & Barnes, T. G. (2017). A comprehensive study of young B stars in NGC 2264 I. Space photometry and asteroseismology. Astronomy & Astrophysics (A&A), 601, Article A101. https://doi.org/10.1051/0004-6361/201630327
Hatcliff, J. & Danvy, O. (1997). A computational formalization for partial evaluation. Mathematical Structures in Computer Science, 7(5), 507-541. https://doi.org/10.1017/S0960129597002405
Hatcliff, J. & Danvy, O. (1996). A computational formalization for partial evaluation. BRICS Report Series, RS-96-34.
Schauser, L., Fredslund, J., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). A computational pipeline towards the development of comparative anchor tagged sequence (CATS) markers. In M. O. Humphrey (Ed.), Proceedings of the International Grassland Congress (IGC) (pp. 73-81). Wageningen Academic Publishers.
Jordan, V. E., Walker, J. A., Beckstrom, T. O., Steely, C. J., McDaniel, C. L., St Romain, C. P., The Baboon Genome Analysis Consortium, Worley, K. C., Phillips-Conroy, J., Jolly, C. J., Rogers, J., Konkel, M. K. & Batzer, M. A. (2018). A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms. Mobile DNA, 9(1), Article 13. https://doi.org/10.1186/s13100-018-0118-3
Ding, V. Z. Y., Dawson, S. S. H., Lau, L. W. Y., Lee, D. R., Galant, N. J., Setiadi, D. H., Jójárt, B., Szöri, M., Mucsi, Z., Viskolcz, B., Jensen, S. K. & Csizmadia, I. G. (2011). A computational study of glutathione and its fragments: N-acetylcisteinylglycine and γ-glutamylmethylamide. Chemical Physics Letters, 507, 168-173. https://doi.org/10.1016/j.cplett.2011.03.067
Madsen, O. L., Torgersen, M., Røn, H. & Thorup, K. K. (1998). A Conceptual Approach to Teaching Object-Orientation to C Programmers. In M. L. Manns (Ed.), Proceedings Educators' Symposium: Conference on Object-Oriented Programming Systems, Languages and Applications (OOPSLA'98). Session: Mastering OO Modeling: Experiences in OO Education. (pp. 3-10). Association for Computing Machinery.
Bødker, S. & Christiansen, E. (1995). A conceptual toolbox for designing CSCW applications. In COOP'95: Proceedings of the First International Workshop on the Design of Cooperative Systems (pp. 266-284). INRIA Press.
Bødker, S., Christiansen, E. & Thüring, M. (1995). A conceptual toolbox for designing CSCW applications. Department of Computer Science, Aarhus University.
Biernacka, M. & Danvy, O. (2007). A Concrete Framework for Environment Machines. A C M Transactions on Computational Logic, 9(1), 1-30.
Hansen, J. (1983). A connectedness theorem for flagmanifolds and Grassmannians. American Journal of Mathematics, 105(3), 633-639.
Thomsen, R. M., Nie, S., Lothenbach, B., Jensen, L. R., Nielsen, A. H., Skibsted, J. & Yue, Y. (2025). A connection between structure and reactivity in alkali-modified calcium aluminosilicate glasses for sustainable cements. Journal of Non-Crystalline Solids, 665, Article 123606. https://doi.org/10.1016/j.jnoncrysol.2025.123606
Rohrer, G. A., Alexander, L. J., Beattie, C. W., Wilkie, P., Flickinger, G. H., Schook, L. B., Paszek, A. A., Andersson, L., Mariani, P., Marklund, L., Fredholm, M., Hoyheim, B., Archibald, A. L., Nielsen, V. H., Thomsen, B., Milan, D. & Groenen, M. A. M. (1997). A consensus linkage map for swine chromosome 7. Animal Genetics, 28, 223-229.
Molleston, J. M., Sabin, L. R., Moy, R. H., Menghani, S. V., Rausch, K., Gordesky-Gold, B., Hopkins, K. C., Zhou, R., Jensen, T. H., Wilusz, J. E. & Cherry, S. (2016). A conserved virus-induced cytoplasmic TRAMP-like complex recruits the exosome to target viral RNA for degradation. Genes & Development, 30(14), 1658-1670. https://doi.org/10.1101/gad.284604.116
Hubert, C., Loy, A., Nickel, M., Arnosti, C., Baranyi, C., Brüchert, V., Ferdelman, T., Finster, K., Christensen, F. M., Rezende, J. R. D., Vandieken, V. & Jørgensen, B. B. (2009). A constant flux of diverse thermophilic bacteria into the cold arctic seabed. Science, 325, 1541-1544. https://doi.org/10.1126/science.1174012
Delgado, A., Jensen, R. M., Janstrup, K., Rose, T. H. & Andersen, K. (2012). A Constraint Programming Model for Fast Optimal Stowage of Container Vessel Bays. European Journal of Operational Research, 220(1), 251-261. https://doi.org/10.1016/j.ejor.2012.01.028

Sort by: Date | Author | Title

Straarup, M., Hoppe, L. E., Pooma, R. & Barfod, A. S. (2018). The role of beetles in the pollination of the mangrove palm Nypa fruticans. Nordic Journal of Botany, 36(9), Article 01967. https://doi.org/10.1111/njb.01967
Zheng, T., Brittain, T., Watmough, N. J. & Weber, R. E. (1999). The role of amino acid alpha38 in the control of oxygen binding to human adult and embryonic haemoglobin Portland. Biochemical Journal, 343 Pt 3, 681-5.
Guo, W.-Y., van Kleunen, M., Winter, M., Weigelt, P., Stein, A., Pierce, S., Pergl, J., Moser, D., Maurel, N., Lenzner, B., Kreft, H., Essl, F., Dawson, W. & Pysek, P. (2018). The role of adaptive strategies in plant naturalization. Ecology Letters, 21(9), 1380-1389. https://doi.org/10.1111/ele.13104
ELSGAARD, L., PRIEUR, D., MUKWAYA, GM. & JØRGENSEN, BB. (1994). Thermophilic Sulfate Reduction in Hydrothermal Sediment of Lake Tanganyika, East-Africa. Applied and Environmental Microbiology, 60(5), 1473-1480.
ISAKSEN, MF., BAK, F. & JØRGENSEN, BB. (1994). Thermophilic Sulfate-Reducing Bacteria in Cold Marine Sediment. FEMS Microbiology Ecology, 14(1), 1-8.
JØRGENSEN, BB., ZAWACKI, LX. & JANNASCH, HW. (1990). Thermophilic Bacterial Sulfate Reduction in Deep-Sea Sediments at the Guaymas Basin Hydrothermal Vent Site (Gulf of California). Deep-Sea Research Part I: Oceanographic Research Papers, 37(4), 695-710.
Ervik, F. & Barfod, A. S. (1999). Thermogenesis in palm inflorescences and its ecological significance. In Número temático: Arecaceae (pp. 195-212). Herbario Nacional de Venezuela.
Weber, R. (2004). Thermodynamics of O2 binding to invertebrate respiratory pigments. Paper presented at Cesenatico, Italy, 23-26 September.
Jensen, F. B. & Weber, R. E. (1987). Thermodynamic analysis of precisely measured oxygen equilibria of tench hemoglobin and their dependence on ATP and protons. Journal of Comparative Physiology B: Biochemical, Systems, and Environmental Physiology, 157, 137-143.
Findsen, A., Pedersen, T. H. & Overgaard, J. (2014). Thermal sensitivity of excitation-contraction-coupling in a chill susceptible insect, Locusta migratoria. Poster session presented at 2014 APS Intersociety Meeting: Comparative Approaches to Grand Challenges in Physiology , San Diego, United States.
Trotta, V., Pertoldi, C., Rudoy, A., Manenti, T., Cavicchi, S. & Guerra, D. (2010). Thermal plasticity of wing size and shape in Drosophila melanogaster, D. simulans and their hybrids. Climate Research, 43, 71-79.
Bodensteiner, B. L., Agudelo-Cantero, G. A., Arietta, A. Z. A., Gunderson, A. R., Muñoz, M. M., Refsnider, J. M. & Gangloff, E. J. (2021). Thermal adaptation revisited: How conserved are thermal traits of reptiles and amphibians? Journal of Experimental Zoology. Part A: Ecological and Integrative Physiology , 335(1), 173-194. https://doi.org/10.1002/jez.2414
Liu, L., Yin, M., Guo, X., Yu, X., Song, H., Eller, F., Ma, X., Liu, X., Du, N., Wang, R. & Guo, W. (2021). The river shapes the genetic diversity of common reed in the Yellow River Delta via hydrochory dispersal and habitat selection. Science of the Total Environment, 764, Article 144382. https://doi.org/10.1016/j.scitotenv.2020.144382
Mouritsen, K. N. & Poulin, R. (2003). The risk of being at the top: foot-cropping in the New Zealand cockle Austrovenus stutchburyi. Journal of the Marine Biological Association of the United Kingdom, 83, 497-498.
Barfod, A. S. (1989). The rise and fall of the vegetable ivory. Principes, 33(4), 181-190.
Root-Bernstein, M. & Root-Bernstein, R. (2014). The ribosome as a missing link in the evolution of life. Journal of Theoretical Biology, 367, 130-158. https://doi.org/10.1016/j.jtbi.2014.11.025
Scholz, V. V., Müller, H., Koren, K., Nielsen, L. P. & Meckenstock, R. U. (2019). The rhizosphere of aquatic plants is a habitat for cable bacteria. FEMS Microbiology Ecology, 95(6), Article fiz062. https://doi.org/10.1093/femsec/fiz062
Hylleberg, J. (2004). The results of the Vietnamese Inventory. In The Third National Workshop on Marine Molluscs: Ministry of Fisheries, Hanoi (pp. 21-22 [in Vietnamese], 23 [in English]).
Qiu, Y., Teng, S. N., Zhang, Y., Santana, J., Svenning, J. C., Reino, L., Abades, S., Ma, H., Yang, L., Wu, Y., Huang, Z. Y. X. & Xu, C. (2019). The resolution-dependent role of landscape attributes in shaping macro-scale biodiversity patterns. Global Ecology and Biogeography, 28(6), 767-778. https://doi.org/10.1111/geb.12889
Kanaparthi, D., Lampe, M., Krohn, J. H., Zhu, B., Hildebrand, F., Boesen, T., Klingl, A., Phapale, P. & Lueders, T. (2024). The reproduction process of Gram-positive protocells. Scientific Reports, 14(1), Article 7075. https://doi.org/10.1038/s41598-024-57369-4
Castro, S. A., Prado, J. V., Wang, T. & Leite, C. A. C. (2024). The relevance of vascular adjustments to hemodynamic control in the face of temperature change in Crotalus durissus. Journal of Experimental Biology, 227(15), Article jeb247724. https://doi.org/10.1242/jeb.247724
Catalán, N., Pastor, A., Borrego, C. M., Casas-Ruiz, J. P., Gutiérrez, C., von Schiller, D. & Marcé, R. (2021). The relevance of environment vs. composition on dissolved organic matter degradation in freshwaters. Limnology and Oceanography, 66(2), 306-320. https://doi.org/10.1002/lno.11606
Svenning, J.-C., Engelbrecht, B. M. J., Kinner, D. A., Kursar, T. A., Stallard, R. F. & Wright, J. (2006). The relative roles of environment, history and loval dispersal in controlling the distributions of common tree and shrub species in a tropical forest landscape, Panama. Journal of Tropical Ecology, 22, 575-586.
Šímová, I., Sandel, B., Enquist, B. J., Michaletz, S. T., Kattge, J., Violle, C., McGill, B. J., Blonder, B., Engemann, K., Peet, R. K., Wiser, S. K., Morueta-Holme, N., Boyle, B., Kraft, N. J. B. & Svenning, J. C. (2019). The relationship of woody plant size and leaf nutrient content to large-scale productivity for forests across the Americas. Journal of Ecology, 107(5), 2278-2290. https://doi.org/10.1111/1365-2745.13163
Cai, Q., Welk, E., Ji, C., Fang, W., Sabatini, F. M., Zhu, J., Zhu, J., Tang, Z., Attorre, F., Campos, J. A., Čarni, A., Chytrý, M., Çoban, S., Dengler, J., Dolezal, J., Field, R., Frink, J. P., Gholizadeh, H., Indreica, A. ... Bruelheide, H. (2021). The relationship between niche breadth and range size of beech (Fagus) species worldwide. Journal of Biogeography, 48(5), 1240-1253. https://doi.org/10.1111/jbi.14074
Crossley, J. L., Elsey, R., Crossley, D. A., Wang, T. & Hicks, J. W. (2024). There is no limitation for CO2 excretion across the lung in exercising American alligators (Alligator mississippiensis). The Journal of experimental biology, 227(18), Article jeb248139. https://doi.org/10.1242/jeb.248139
Stewart, L., Alsos, I. G., Bay, C., Breen, A. L., Brochmann, C., Boulanger-Lapointe, N., Broennimann, O., Bültmann, H., Bøcher, P. K., Damgaard, C., Daniëls, F. J. A., Ehrich, D., Eidesen, P. B., Guisan, A., Jónsdóttir, I. S., Lenoir, J., le Roux, P. C., Lévesque, E., Luoto, M. ... Pellissier, L. (2016). The regional species richness and genetic diversity of Arctic vegetation reflect both past glaciations and current climate. Global Ecology and Biogeography, 25(4), 430-442. https://doi.org/10.1111/geb.12424