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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Ramsing, N. B., Gundersen, J., Hilligsøe, K. M., Berntsen, J. & Agerholm, I. E. (2013). Adaptive embryo selection criteria optimized through iterative customization and collaboration. (Patent No. WO 2013004239 A1).
Kalkofen, D., Veas, E., Zollmann, S., Steinberger, M. & Schmalstieg, D. (2013). Adaptive ghosted views for Augmented Reality. In 2013 IEEE International Symposium on Mixed and Augmented Reality, ISMAR 2013 (pp. 1-9). Article 6671758 https://doi.org/10.1109/ISMAR.2013.6671758
Johnson, F. A. & Madsen, J. (2013). Adaptive Harvest Management for the Svalbard Population of Pink‐Footed Geese: Assessment for the 2013-2015 hunting seasons. Aarhus University, DCE - Danish Centre for Environment and Energy. Technical Report from DCE - Danish Centre for Environment and Energy No. 28 http://dce2.au.dk/pub/TR28.pdf
Zardbani, F., Mamoulis, N., Idreos, S. & Karras, P. (2023). Adaptive Indexing of Objects with Spatial Extent. Proceedings of the VLDB Endowment, 16(9), 2248-2260. https://doi.org/10.14778/3598581.3598596
Engholm, R., Karstoft, H. & Jensen, E. B. V. (2009). Adaptive kernel filtering used in video processing. In Visual Communications and Image Processing 2009 (pp. 72571E). SPIE - International Society for Optical Engineering. https://doi.org/10.1117/12.808155
Jafargholi, Z., Scafuro, A. & Wichs, D. (2017). Adaptively Indistinguishable Garbled Circuits. In Y. Kalai & L. Reyzin (Eds.), Theory of Cryptography - 15th International Conference, TCC 2017, Proceedings (Vol. 10678, pp. 40-71). Springer VS. https://doi.org/10.1007/978-3-319-70503-3
Damgård, I. B., Polychroniadou, A. & Rao, V. (2016). Adaptively Secure Multi-Party Computation from LWE (via Equivocal FHE). In Public-Key Cryptography – PKC 2016 - 19th IACR International Conference on Practice and Theory in Public-Key Cryptography, Proceedings (Vol. 9615 , pp. 208-233). Springer VS. https://doi.org/10.1007/978-3-662-49387-8_9
Unfried, F., Becker, S., Robb, C. S., Hehemann, J.-H., Markert, S., Heiden, S. E., Hinzke, T., Becher, D., Reintjes, G., Krüger, K., Avci, B., Kappelmann, L., Hahnke, R. L., Fischer, T., Harder, J., Teeling, H., Fuchs, B., Barbeyron, T., Amann, R. & Schweder, T. (2018). Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms. The ISME Journal, 12(12), 2894-2906. https://doi.org/10.1038/s41396-018-0243-5
Schluttenhofer, S. & Johannes, J. (2020). Adaptive Minimax Testing for Circular Convolution. Mathematical Methods of Statistics, 29(2), 106-133. https://doi.org/10.3103/S1066530720020039
Wang, H., Schwefel, H.-P. & Toftegaard, T. S. (2007). Adaptive Modulation for a Downlink Multicast Channel in OFDMA Systems. In IEEE Wireless Communications and Networking Conference. WCNC 2007. (pp. 650-655). IEEE Computer Society Press. https://doi.org/10.1109/WCNC.2007.125
Weber, R. E. (2006). Adaptive modulation of temperature sensitivity in vertebrate haemoglobins. In XIV International Conference on Dioxygen Binding and Sensing Proteins - Stazione Zoologica Anton Dohrn, Naples - September 3-7, 2006 (pp. 52)
Engholm, R. (2010). Adaptive picture enhancement. Department of Computer Science, Aarhus University.
Weber, R. E. & Fago, A. (2008). Adaptive reduction in temperature dependence of hemoglobin-oxygen binding in a heterothermic fish (Blue Marlin). Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, (1/Suppl.), S52.
Jafargholi, Z. & Oechsner, S. (2020). Adaptive Security of Practical Garbling Schemes. In K. Bhargavan, E. Oswald & M. Prabhakaran (Eds.), Progress in Cryptology – INDOCRYPT 2020 - 21st International Conference on Cryptology in India 2020, Proceedings: INDOCRYPT 2020 (pp. 741-762). Springer VS. https://doi.org/10.1007/978-3-030-65277-7_33
Canetti, R., Damgård, I. B., Dziembowski, S., Ishai, Y. & Malkin, T. (2004). Adaptive versus Non-Adaptive Security of Multi-Party Protocols. Journal of Cryptology, 17(3), 153-207. https://doi.org/10.1007/s00145-004-0135-x
Damgård, I. B. & Nielsen, J. B. (2014). Adaptive versus static security in the UC Model. In S. S. M. Chow , J. K. Liu, L. C. K. Hui & S. M. Yiu (Eds.), Provable Security: 8th International Conference, ProvSec 2014, Hong Kong, China, October 9-10, 2014. Proceedings (pp. 10-28). Springer VS. https://doi.org/10.1007/978-3-319-12475-9_2
Asif, M. R., Maurya, P. K., Foged, N. & Christiansen, A. V. (2023). A DATA DRIVEN APPROACH FOR ROBUST INVERSION OF INDUCED POLARIZATION EFFECTS IN TRANSIENT ELECTROMAGNETIC DATA. In APPLICATION OF GEOPHYSICS TO ENGINEERING AND ENVIRONMENTAL PROBLEMS: SYMPOSIUM. 35TH 2023. (SAGEEP 2023) (pp. 82-82). Curran Associates.
Egelund, L. & Pedersen, M. N. (2017). A day on the dig. In A. Lichtenberger & R. Raja (Eds.), Gerasa/Jerash: From the Urban Periphery (pp. 21-26). Fællestrykkeriet SUN Aarhus Universitet.
Reidys, C. M., Huang, F. W., Andersen, J. E., Penner, R., Stadler, P. F. & Nebel, M. E. (2012). Addendum: topology and prediction of RNA pseudoknots. Bioinformatics, 28(2), 300. https://doi.org/10.1093/bioinformatics/btr643
Backes, M., Goldberg, I., Kate, A. & Toft, T. (2012). Adding query privacy to robust DHTs. In ASIACCS '12 Proceedings of the 7th ACM Symposium on Information, Computer and Communications Security (pp. 30-31 ). Association for Computing Machinery. https://doi.org/10.1145/2414456.2414473
Allan, C., Avgustinov, P., Christensen, A. S., Hendren, L., Kuzins, S., Lhot´ak, O., de Moor, O., Sereni, D., Sittampalam, G. & Tibble, J. (2005). Adding Trace Matching with Free Variables to AspectJ. In Proc. 20th International Conference on Object-Oriented Programming Systems, Languages and Applications, OOPSLA 2005 (pp. 345-364)
Fomsgaard, I. S., Añon, M. C., Barba de la Rosa, A. P., Christophersen, C., Dusek, K., Délano-Frier, J., Espinoza Pérez, J., Fonseca, A., Janovská, D., Kudsk, P., Labouriau, R. S., Lacayo Romero, M. L., Martínez, N., Matus, F., Matusová, K., Mathiassen, S. K., Noellemeyer, E. J., Pedersen, H. A., Stavelikova, H. ... Taberner, A. (2010). Adding Value to Holy Grain: Providing the Key Tools for the Exploitation of Amaranth - the Protein-rich Grain of the Aztecs. Results from a Joint European - Latin American ResearchProject. Aarhus University.
Fomsgaard, I. S., Añon, M. C., Barba de la Rosa, A. P., Christophersen, C., Dusek, K., Délano-Frier, J., Espinoza Pérez, J., Fonseca, A., Janovská, D., Kudsk, P. N., Labouriau, R. S., Lacayo Romero, M. L., Martínez, N., Matusová, K., Mathiassen, S. K., Noellemeyer, E. J., Pedersen, H., Stavelikova, H., Steffensen, S. K. ... Taberner, A. (2010). Adding Value to Holy Grain: Providing the Key Tools for the Exploitation of Amaranth - The Protein-rich Grain of the Aztecs: Results from a Joint European - Latin American Research Project. Abstract from Tropentag 2010. World Food System - A contribution from Europe, Zürich, Switzerland.
Torgersen, M., Hansen, C. P., Ernst, E., Ahé, P. V. D., Bracha, G. & Gafter, N. M. (2004). Adding Wildcards to the Java Programming Language. In Proceedings of the 2004 ACM Symposium on Applied Computing (Vol. 104042, pp. 1289-1296). Association for Computing Machinery. https://doi.org/10.1145/967900.968162
Torgersen, M., Hansen, C. P., Ernst, E., von der Ahé, P., Bracha, G. & Gafter, N. M. (2004). Adding Wildcards to the Java Programming Language. Journal of Object Technology, 3(11), 97-116. https://doi.org/10.5381/jot.2004.3.11.a5
Cascudo Pueyo, I., Damgård, I. B., David, B. M., Giacomelli, I., Nielsen, J. B. & Trifiletti, R. (2015). Additively Homomorphic UC commitments with Optimal Amortized Overhead. In J. Katz (Ed.), Public-Key Cryptography, PKC 2015: 18th IACR International Conference on Practice and Theory in Public-Key Cryptography, Gaithersburg, MD, USA, March 30-April 1, 2015, Proceedings (pp. 495–515). Springer. https://doi.org/10.1007/978-3-662-46447-2_22
Zhao, R., Wittig, N. K., De Angelis, G., Yuan, T., Hirsch, M., Birkedal, H. & Amstad, E. (2023). Additive Manufacturing of Porous Biominerals. Advanced Functional Materials, 33(37), Article 2300950. https://doi.org/10.1002/adfm.202300950
Saavedra, D., Fernández, N. & Svenning, J. C. (2023). Addressing challenges for large-scale trophic rewilding. Journal for Nature Conservation, 73, Article 126382. https://doi.org/10.1016/j.jnc.2023.126382

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Weber, R. E., Sullivan, B., Bonaventura, J. & Bonaventura, C. (1977). The haemoglobin systems of the bloodworms Glycera dibranchiata and G. americana. Oxygen binding properties of haemolysates and component haemoglobins. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 58B, 183-187.
Frey, B. J., Weber, R. E., Aardt, W. J. V. & Fago, A. (1998). The haemoglobin system of the mudfish, Labeo capensis: adaptations to temperature and hypoxia. Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology, 120(4), 735-742.
Teske, A., de Beer, D., McKay, L. J., Tivey, M. K., Biddle, J. F., Hoer, D., Lloyd, K. G., Lever, M. A., Røy, H., Albert, D. B., Mendlovitz, H. P. & MacGregor, B. J. (2016). The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats: Complex Seafloor Expressions of Subsurface Hydrothermal Circulation. Frontiers in Microbiology, 7(FEB), Article 75. https://doi.org/10.3389/fmicb.2016.00075
Sands, C. J., Zwerschke, N., Bax, N., Barnes, D. K. A., Moreau, C., Downey, R., Moreno, B., Held, C. & Paulsen, M. (2023). The Growing Potential of Antarctic Blue Carbon. Oceanography, 36(1), 16-17. https://doi.org/10.5670/oceanog.2023.s1.5
Russo, R., Giordano, D., Paredi, G., Marchesani, F., Milazzo, L., Altomonte, G., Del Canale, P., Abbruzzetti, S., Ascenzi, P., Di Prisco, G., Viappiani, C., Fago, A., Bruno, S., Smulevich, G. & Verde, C. (2017). The Greenland shark Somniosus microcephalus -Hemoglobins and ligand-binding properties. PLoS One, 12(10), Article e0186181. https://doi.org/10.1371/journal.pone.0186181
Hawkings, J., Wadham, J., Tranter, M., Telling, J., Bagshaw, E., Beaton, A., Simmons, S.-L., Chandler, D., Tedstone, A. & Nienow, P. (2016). The Greenland Ice Sheet as a hot spot of phosphorus weathering and export in the Arctic. Global Biogeochemical Cycles, 30(2), 191-210. https://doi.org/10.1002/2015GB005237
Hatfield, J. H., Allen, B. J., Carroll, T., Dean, C. D., Deng, S., Gordon, J. D., Guillerme, T., Hansford, J. P., Hoyal Cuthill, J. F., Mannion, P. D., Martins, I. S., Payne, A. R. D., Shipley, A., Thomas, C. D., Thompson, J. B., Woods, L. & Davis, K. E. (2025). The Greatest Extinction Event in 66 Million Years? Contextualising Anthropogenic Extinctions. Global change biology, 31(9), Article e70476. https://doi.org/10.1111/gcb.70476
Yaworsky, P. M., Vernon, K. B., McCool, W. C., Hart, I. A., Spangler, J. & Codding, B. F. (2024). The Goldilocks Zone for maize agriculture and the settlement and abandonment of the West Tavaputs Plateau. Quaternary International, 689-690, 30-42. https://doi.org/10.1016/j.quaint.2023.12.003
Geuens, E., Tilleman, L., Hoogewijs, D., Kiger, L., Marden, M., Fago, A., Weber, R. E., Vanfleteren, J., Moens, L. & Dewilde, S. (2006). The globin family of C. elegans. In XIV International Conference on Dioxygen Binding and Sensing Proteins.- Stazione Zoologica Anton Dohrn, Naples. September 3-7, 2006. (pp. 69)
Mi, X., Feng, G., Hu, Y., Zhang, J., Chen, L., Corlett, R. T., Hughes, A. C., Pimm, S., Schmid, B., Shi, S., Svenning, J. C. & Ma, K. (2021). The global significance of biodiversity science in China: An overview. National Science Review, 8(7), Article nwab032. https://doi.org/10.1093/nsr/nwab032
Rodríguez, J. P., Fernández-Gracia, J., Duarte, C. M., Irigoien, X. & Eguíluz, V. M. (2021). The global network of ports supporting high seas fishing. Science Advances, 7(9), Article eabe3470. https://doi.org/10.1126/sciadv.abe3470
Kissling, W. D., Baker, W. J., Balslev, H., Barfod, A. S., Borchsenius, F., Dransfield, J., Govaerts, R. & Svenning, J.-C. (2010). The global diversity of palms on island and mainland regions. Abstract from Palms 2010, Montpellier, France.
Mo, L., Crowther, T. W., Maynard, D. S., van den Hoogen, J., Ma, H., Bialic-Murphy, L., Liang, J., de-Miguel, S., Nabuurs, G. J., Reich, P. B., Phillips, O. L., Abegg, M., Adou Yao, Y. C., Alberti, G., Almeyda Zambrano, A. M., Alvarado, B. V., Alvarez-Dávila, E., Alvarez-Loayza, P., Alves, L. F. ... Zohner, C. M. (2024). The global distribution and drivers of wood density and their impact on forest carbon stocks. Nature Ecology and Evolution, 8(12), 2195-2212. Article 2555. https://doi.org/10.1038/s41559-024-02564-9
Ma, H., Crowther, T. W., Mo, L., Maynard, D. S., Renner, S. S., van den Hoogen, J., Zou, Y., Liang, J., de-Miguel, S., Nabuurs, G. J., Reich, P. B., Niinemets, Ü., Abegg, M., Adou Yao, Y. C., Alberti, G., Almeyda Zambrano, A. M., Alvarado, B. V., Alvarez-Dávila, E., Alvarez-Loayza, P. ... Zohner, C. M. (2023). The global biogeography of tree leaf form and habit. Nature Plants, 9(11), 1795–1809. https://doi.org/10.1038/s41477-023-01543-5
Muscarella, R., Emilio, T., Phillips, O. L., Lewis, S. L., Slik, F., Baker, W. J., Couvreur, T. L. P., Eiserhardt, W. L., Svenning, J. C., Aiba, S. I., de Almeida, E. C., de Almeida, S. S., de Oliveira, E. A., Álvarez-Dávila, E., Alves, L. F., Alvez-Valles, C. M., Carvalho, F. A., Guarin, F. A., Andrade, A. ... Balslev, H. (2020). The global abundance of tree palms. Global Ecology and Biogeography, 29(9), 1495-1514. https://doi.org/10.1111/geb.13123
Barfod, A. & Saw, L. G. (2002). The genus Licuala (Arecaceae, Coryphoideae) in Thailand. Kew Bulletin, 57, 827-852.
Meeboonya, R., Ngernsaengsaruay, C., Balslev, H. & Chayamarit, K. (2019). The genus dumasia (fabaceae) in Thailand. Thai Forest Bulletin (Botany), 47(1), 113-120. https://doi.org/10.20531/tfb.2019.47.1.15
Simpson, L., Cantrill, D. J., Byrne, M., Allnutt, T. R., King, G. J., Lum, M., Al Bkhetan, Z., Andrew, R. L., Baker, W. J., Barrett, M. D., Batley, J., Berry, O., Binks, R. M., Bragg, J., Broadhurst, L., Brown, G., Bruhl, J. J., Edwards, R. J., Ferguson, S. ... Crayn, D. M. (2025). The Genomics for Australian Plants (GAP) framework initiative - developing genomic resources for understanding the evolution and conservation of the Australian flora. Australian Systematic Botany, 38(3), Article SB24022. https://doi.org/10.1071/SB24022
Gamba, D., Lorts, C. M., Haile, A., Sahay, S., Lopez, L., Xia, T., Takou, M., Kulesza, E., Elango, D., Kerby, J., Yifru, M., Bulafu, C. E., Wondimu, T., Glowacka, K. & Lasky, J. R. (2024). The genomics and physiology of abiotic stressors associated with global elevational gradients in Arabidopsis thaliana. New Phytologist, 244(5), 2062-2077. https://doi.org/10.1111/nph.20138
Lenzner, B., Beierkuhnlein, C., Patrick, W., Kreft, H. & Steinbauer, M. (2017). The general dynamic model of island biogeography revisited on the level of major plant families. Journal of Biogeography, 44(5), 1029. https://doi.org/10.1111/jbi.12906
Kuypers, M. M. M. & Jørgensen, B. B. (2007). The future of single-cell environmental microbiology. Environmental Microbiology, 9, 6-7.
Grant, D. M., Brodnicke, O. B., Evankow, A. M., Ferreira, A. O., Fontes, J. T., Hansen, A. K., Jensen, M. R., Kalaycı, T. E., Leeper, A., Patil, S. K., Prati, S., Reunamo, A., Roberts, A. J., Shigdel, R., Tyukosova, V., Bendiksby, M., Blaalid, R., Costa, F. O., Hollingsworth, P. M. ... Ekrem, T. (2021). The future of DNA barcoding: Reflections from early career researchers. Diversity, 13(7), Article 313. https://doi.org/10.3390/d13070313
Oliveira, C., Wahlberg, M., Johnson, M., J. O. Miller, P. & Madsen, P. P. T. (2013). The function of male sperm whale slow clicks in a high latitude habitat: Communication, echolocation, or prey debriliation? Acoustical Society of America. Journal, 135(5), 3135-3144. https://doi.org/10.1121/1.4795798
Hicks, J. W. & Nielsen, T. W. (2012). The Functional Significance of the Reptilian Heart: New Insights into an Old Question. In Ontogeny and Phylogeny of the Vertebrate Heart (pp. 207-227). Springer. https://doi.org/10.1007/978-1-4614-3387-3_9
Yan, H., Schmid, B., Xu, W., Bongers, F. J., Chen, G., Tang, T., Wang, Z., Svenning, J. C., Ma, K. & Liu, X. (2024). The functional diversity–productivity relationship of woody plants is climatically sensitive. Ecology and Evolution, 14(5), Article e11364. https://doi.org/10.1002/ece3.11364
W. Stauffer, F., Barfod, A. S. & Rudall, P. (2008). The flower of Nypa (Nypoideae) and its implications for palm floral evolution. Abstract from The fourth international conference: the comparative biology of the Monocotyledons, Copenhagen.
Brix, H., Koottatep, T., Fryd, O. & Laugesen, C. H. (2009). The flower and the butterfly constructed wetland system at Koh Phi Phi - system design and lessons learnt during implementation and operation. In J. M. Bayona & J. García (Eds.), Ikke angivet (pp. 36-37). Consejo Superior de Investigaciones Cientificas, Ciencia e Investigacion, Universitat Politecnica de Catalunya.
Cedhagen, T. & Sundberg, P. (1986). The first record of a nemertine in the literature. Archives of Natural History, 13(1), 7-8.
Phasuk, B. & Hylleberg, J. (1986). The First PMBC/DANIDA training course and workshop on taxonomy of marine bivalves with emphasis on economic species. Phuket Marine Biological Center. Special Publications, 1-12.
Phasuk, B. & Hylleberg, J. (1986). The First PMBC/ DANIDA training course and workshop on polychaetes. Phuket Marine Biological Center. Special Publications, 3, 1-8.
Schander, C., Rapp, H. T., Kongsrud, J. A., Bakken, T., Berge, J., Cochrane, S., Oug, E., Byrkjedal, I., Todt, C., Cedhagen, T., Fosshagen, A., Gebruk, A., Larsen, K., Levin, L., Obst, M., Pleijel, F. & Stöhr, S. (2010). The fauna of hydrothermal vents on the Mohn Ridge (North Atlantic). Marine Biology Research, 6(2), 155 - 171.
Zhang, Y., Lv, T., Carvalho, P., Arias, C. A. & Brix, H. (2014). The fate of two pharmaceuticals in hydroponic monoculture: five different plants comparison. Abstract from 14th International Conference on Wetland Systems for Water Pollution Control, Shanghai, China.