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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Vilhelmsen, T. N., Marker, P. A., Foged, N., Christiansen, A. V., Auken, E. & Bauer-Gottwein, P. (2016). Addressing Current Challenges on Groundwater Model Structure through Effective Use of Geophysical Data. Abstract from 78th EAGE Conference & Exhibition 2016, Vienna, Austria.
Grønbæk, K., Reich, S., Wiil, U. K., Nürnberg, P. J., Anderson, K. M., Millard, D. E., Haake, J. M. & Davis, H. C. (1999). Addressing Interoperability in Open Hypermedia: The Design of the Open Hypermedia Protocol. New Review of Hypermedia and Multimedia, 5(1), 207-248. https://doi.org/10.1080/13614569908914714
Jørgensen, J. B. (2006). Addressing Problem Frame Concerns Using Coloured Petri Nets and Graphical Animation. International Workshop on Advances and Applications of Problem Frames.
Lassen, J. K. (2025). Addressing sources of variance in large-scale metabolomics. [PhD thesis, Aarhus University]. Aarhus Universitet, Institut for Molekylærbiologi og genetik.
Hylleberg, J. (1996). Address on the occasion of the 6th TMMP Workshop. Phuket Marine Biological Center. Special Publications, 16, 12.
Hylleberg, J. (1992). Address to participants. Phuket Marine Biological Center. Special Publications, 11, 5-6.
Kristensen, K. & Rasmussen, I. A. (1997). A decision support system for mechanical weed control in malting barley. In Proceedings of the First European Conference for Information Technology in Agriculture (pp. 447-452)
Ingstrup, M. & Hansen, K. M. (2005). A Declarative Approach to Architectural Reflection. In R. Nord, N. Medvidovic, R. Krikhaar, J. Stafford & J. Bosch (Eds.), 5th Working IEEE/IFIP Conference on Software Architecture (pp. 149-158). IEEE Computer Society Press. https://doi.org/10.1109/WICSA.2005.6
Andersen, K., Jensen, R. M. & Ajspur, M. L. (2019). A Decomposed Fourier-Motzkin Elimination Framework to Derive Vessel Capacity Models. In 10th ICCL conference (Vol. 11756, pp. 85-100). Springer. https://doi.org/10.1007/978-3-030-31140-7_6
Dupont-Dupuis, F., Szehr, O. & Tomamichel, M. (2014). A decoupling approach to classical data transmission over quantum channels. I E E E Transactions on Information Theory, 60(3), 1562 - 1572 . https://doi.org/10.1109/TIT.2013.2295330
Sandemann, J. R. (2023). A Deep Dive on ZnFe2O4 - and other crystallographic fun. [PhD thesis, Aarhus University]. Aarhus Universitet.
Patton, P. T., Cheeseman, T., Abe, K., Yamaguchi, T., Reade, W., Southerland, K., Howard, A., Oleson, E. M., Allen, J. B., Ashe, E., Athayde, A., Baird, R. W., Basran, C., Cabrera, E., Calambokidis, J., Cardoso, J., Carroll, E. L., Cesario, A., Cheney, B. J. ... Bejder, L. (2023). A deep learning approach to photo–identification demonstrates high performance on two dozen cetacean species. Methods in Ecology and Evolution, 14(10), 2611-2625. https://doi.org/10.1111/2041-210X.14167
Truica, C.-O., Apostol, E. S., Stefu, T. & Karras, P. (2021). A Deep Learning Architecture for Audience Interest Prediction of News Topic on Social Media. In Y. Velegrakis, D. Zeinalipour-Yazti, P. K. Chrysanthis & F. Guerra (Eds.), Advances in Database Technology - EDBT 2021: 24th International Conference on Extending Database Technology, Proceedings (pp. 588-599). openproceedings.org. https://doi.org/10.5441/002/edbt.2021.69
Bui-Ngoc, T., Ly, D. K., Truong, T. T., Thongchom, C. & Nguyen-Thoi, T. (2024). A deep neural network based surrogate model for damage identification in full-scale structures with incomplete noisy measurements. Frontiers of Structural and Civil Engineering, 18(3), 393-410. https://doi.org/10.1007/s11709-024-1060-8
Nazari, P., Cheung, J. S. Y., Asensio, J. F., Murillo, N. M., Dishoeck, E. F. V., Jørgensen, J. K., Bourke, T. L., Chuang, K. .-J., Drozdovskaya, M. N., Fedoseev, G., Garrod, R. T., Ioppolo, S., Linnartz, H., McGuire, B. A., Müller, H. S. P., Qasim, D. & Wampfler, S. F. (2024). A deep search for large complex organic species toward IRAS16293-2422 B at 3 mm with ALMA. https://doi.org/10.1051/0004-6361/202347832
Wray, K. B. (2023). A Defense of Structure in Structure of Scientific Revolutions. In L. Giri, P. Melogno & H. Miguel (Eds.), Perspectives on Kuhn: Contemporary Approaches to the Philosophy of Thomas Kuhn (pp. 25-40). Springer Nature. https://doi.org/10.1007/978-3-031-16371-5_3
Joyce, W. & Wang, T. (2014). Adenosinergic regulation of the cardiovascular system in the red-eared slider Trachemys scripta. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 174, 18-22. https://doi.org/10.1016/j.cbpa.2014.04.002
Filinski, A., Rohde, H. K. & Walukiewicz, I. (Ed.) (2004). A Denotational Account of Untyped Normalization by Evaluation. In Foundations of Software Science and Computation Structures: Proceedings of the 7th International Conference, FOSSACS 2004, Held as Part of the Joint European Conferences on Theory and Practice of Software, ETAPS 2004 (2987 ed., Vol. Lecture Notes in Computer Science, pp. 167-181). Springer.
Frandsen, G. S. (1985). A Denotational Semantics for Logic Programming. Department of Computer Science, Aarhus University.
Hoeltkemeier, B., Glässel, J., Lopez-Carrera, H. & Weidemueller, M. (2017). A dense gas of laser-cooled atoms for hybrid atom-ion trapping. Applied Physics B, 123(1), Article 51. https://doi.org/10.1007/s00340-016-6624-4
Wrisberg, O., Petoe, P., de Lima Ferreira, P., Bacon, C. D., Barfod, A. S., Bellot, S., Cano, Á., Couvreur, T. L. P., Dransfield, J., Henderson, A., Stauffer, F. W., Baker, W. J. & Eiserhardt, W. L. (2025). A densely sampled nuclear phylogenomic analysis of the coryphoid palms (Arecaceae: Coryphoideae). Taxon. Advance online publication. https://doi.org/10.1002/tax.13384
Sljivancanin, Z., Gothelf, K. V. & Hammer, B. (2002). A density functional theory study of enantiospecific adsorption at chiral surf. Journal of the American Chemical Society, 124, 14789-14794.
Gregersen, S. O., Thomsen, S. E. & Askarov, A. (2019). A Dependently Typed Library for Static Information-Flow Control in IDRIS. In F. Nielson & D. Sands (Eds.), Principles of Security and Trust: 8th International Conference, POST 2019, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2019, Proceedings (pp. 51-75). Springer. https://doi.org/10.1007/978-3-030-17138-4_3
Schønwandt, H. K. V., Barnes, G. & Ulrich, T. (2015). A description of the world class rare earth element deposit Tanbreez, South Greenland. In I. Borges de Lima & W. Leal Filho (Eds.), Rare Earth Industry: Technological, Economic, and Environmental Implications (pp. 73-84). Elsevier. https://doi.org/10.1016/B978-0-12-802328-0.00005-X
van Oosterhout, A. (2021). A Design Perspective on Force Feedback. [PhD thesis, Aarhus University]. Aarhus Universitet.
Damgård, I. B. (1989). A Design Principle for Hash Functions. In G. Brassard (Ed.), Advances in Cryptology - CRYPTO' 89 Proceedings (pp. 416-427). Springer. https://doi.org/10.1007/0-387-34805-0_39
Brewer, L., Sandquist, E. L., Mathieu, R. D., Milliman, K., Geller, A. M., Jeffries, M., Orosz, J. A., Brogaard, K. F., Platais, I., Bruntt, H., Grundahl, F., Stello, D. & Frandsen, S. (2013). A Detached Eclipsing Binary near the Turnoff of the Open Cluster NGC 6819 and Determining Age Using Kepler. American Astronomical Society Meeting Abstracts, 221, 250.36. http://adsabs.harvard.edu/abs/2013AAS...22125036B
Kristensen, T. B., Wex, H., Du, L., Nguyen, Q., Nøjgaard, J. K., Nekat, B., Van Pinxteren, D., Bender Koch, C., Dieckman, K., Lowenthal, D. H., Mazzoleni, L., Mentel, T. F., Glasius, M., Herrmann, H., Kjaergaard, H. G., Haller, A. G., Stratmann, F. & Bilde, M. (2012). A detailed characterisation of HULIS from different environments. Abstract from NOSA 2012, Helsingør, Denmark.
Tølbøll, R. J. & Christensen, N. B. (2003). A detailed inversion scheme for helicopterborne electromagnetic frequency-domain data. Paper presented at 9th meeting of the EEGS-ES, Prague, Czech Republic.
Kurbanov, R. N., Buylaert, J. P., Stevens, T., Taratunina, N. A., Belyaev, V. R., Makeev, A. O., Lebedeva, M. P., Rusakov, A. V., Solodovnikov, D., Költringer, C., Rogov, V. V., Streletskaya, I. D., Murray, A. S. & Yanina, T. A. (2022). A detailed luminescence chronology of the Lower Volga loess-palaeosol sequence at Leninsk. Quaternary Geochronology, 73, Article 101376. https://doi.org/10.1016/j.quageo.2022.101376
Challier, A., Thomsen, K. J., Kurbanov, R., Sosin, P., Murray, A., Guérin, G., Meshcheryakova, O., Karayev, A., Khormali, F., Taratunina, N., Utkina, A. & Buylaert, J. P. (2024). A detailed quartz and feldspar luminescence chronology for the Khonako II loess section (Southern Tajikistan). Quaternary Geochronology, 83, Article 101571. https://doi.org/10.1016/j.quageo.2024.101571

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Berdyugina, S. V., Kuhn, J. R., Langlois, M., Moretto, G., Krissansen-Totton, J., Catling, D., Grenfell, J. L., Santl-Temkiv, T., Finster, K., Tarter, J., Marchis, F. & Apai, D. (2018). The Exo-Life Finder (ELF) telescope: New strategies for direct detection of exoplanet biosignatures and technosignatures. In Ground-based and Airborne Telescopes VII (Vol. 10700). SPIE - International Society for Optical Engineering. https://www.spiedigitallibrary.org/conference-proceedings-of-spie/10700/107004I/The-Exo-Life-Finder-ELF-telescope--New-strategies-for/10.1117/12.2313781.short?SSO=1
Laima, M., Lund-Hansen, L. C., Christiansen, C., Pazdro, K., Löeffler, A. & Emeis, K. (1997). The exceptional Oder flood in summer 1997: The impacts on near-shore vertical fluxes of suspended matter and organic matter content in traps, fluff layer, and surface sediments. Poster session presented at Baltic Marine Science, Warnemüende, Germany.
Laima, M. J. C., Lund-Hansen, L. C., Pazdro, K., Christiansen, C. & Emeis, K. C. (1999). The exceptional Oder flood in summer 1997: Near bottom fluxes and composition of suspended matter ín the Pomeranian Bight. Oceanologia, 41(3S), 1-19.
Lubin, Y. & Bilde, T. (2007). The evolution of sociality in spiders. Advances in the Study of Behavior, 37, 83-. https://doi.org/10.1016/S0065-3454(07)37003-4
Morgan, M. T., Schoen, D. J. & Bataillon, T. M. (1997). The evolution of self-fertilization in perennials. American Naturalist, 150(5), 618-638. https://doi.org/10.1086/286085
Tuni, C. (2011). The evolution of polyandrous mating systems. Det Naturvidenskabelige Fakultet, Aarhus Universitet.
Bach, L. A., Helvik, T. & Christiansen, F. B. (2006). The evolution of n-player cooperation—threshold games and ESS bifurcations. Journal of Theoretical Biology, 238, 426-434.
Goldbogen, J. A. & Madsen, P. T. (2018). The evolution of foraging capacity and gigantism in cetaceans. Journal of Experimental Biology, 221(11), Article 166033. https://doi.org/10.1242/jeb.166033
Als, T. D., Vila, R., Kandul, N. P., Nash, D. R., Yen, S.-H., Hsu, Y.-F., Mignault, A. A., Boomsma, J. J. & Pierce, N. E. (2004). The evolution of alternative parasitic life histories in large blue butterflies. Nature, 432(7015), 386-90. https://doi.org/10.1038/nature03020
Mandic, M., Joyce, W. & Perry, S. F. (2021). The evolutionary and physiological significance of the hif pathway in teleost fishes. Journal of Experimental Biology, 224(18), Article jeb231936. https://doi.org/10.1242/jeb.231936
Alarcon, M., Aldasoro, J. J., Roquet, C. & Olesen, J. M. (2014). The evolution and pollination of oceanic bellflowers (Campanulaceae). In P. Pontarotti (Ed.), Evolutionary Biology: Genome evolution, speciation, coevolution and origin of life (Vol. Part II, pp. 301-322). Springer. https://doi.org/10.1007/978-3-319-07623-2_14
Balslev, H. (2010). The EU FP7 funded PALMS project. Abstract from Palms 2010 - Biology of the palm family, Montpellier, France.
Barfod, A. S. & Kvist, L. P. (1996). The ethnobotany of three Amerindian groups of Coastal Ecuador. In Comparative Ethnobotanical Studies of the Amerindian Groups in Coastal Ecuador (pp. 1-166). Det Kongelige Danske Videnskabernes Selskab.
Barfod, A. & Dowe, J. L. (2005). The enigmatic Australian Fan-Palm Licuala ramsayi. Palms, 49(1), 15-23.
Barfod, A. S. (2012). The endocarp oddity in New Guinean species of Licuala. Abstract from European Network of Palm Scientists, San Remo, Italy.
Clausager, K. & Borchsenius, F. (2003). The Marantaceae of Sabah, northern Borneo. Kew Bulletin, 58, 647-678.
Boukens, B. J. D., Kristensen, D. L., Filogonio, R., Carreira, L. B. T., Sartori, M. R., Abe, A. S., Currie, S., Joyce, W., Conner, J., Opthof, T., Crossley, D. A., Wang, T. & Jensen, B. (2019). The electrocardiogram of vertebrates: Evolutionary changes from ectothermy to endothermy. Progress in Biophysics and Molecular Biology, 144, 16-29. https://doi.org/10.1016/j.pbiomolbio.2018.08.005
Scholz, V. V., Nielsen, L. P., Meckenstock, R. U., Müller, H., Koren, K. & Marshall, I. P. G. (2019). The electric rhizosphere of aquatic plants. Abstract from Electromicrobiology 2019, Aarhus, Denmark.
Malte, H. (2011). The Efficiency of Gas Exchange Organs. In A. P. Farrell (Ed.), Encyclopedia of Fish Physiology: From Genome to Environment (Vol. 2, pp. 820-828). Elsevier.
Du, J., Zhang, Y., Qv, M., Li, K., Yin, X., Sorrell, B. K., Wei, M. & Ma, C. (2019). The effects of ZnO nanoparticles on leaf litter decomposition under natural sunlight. Environmental Science: Nano, 6(4), 1180-1188. https://doi.org/10.1039/c8en01353e
Joyce, W., Axelsson, M., Egginton, S., Farrell, A. P., Crockett, E. L. & O'Brien, K. M. (2018). The effects of thermal acclimation on cardio-respiratory performance in an Antarctic fish (Notothenia coriiceps). Conservation Physiology, 6(1), Article coy069. https://doi.org/10.1093/conphys/coy069
Suren, A. M. & Riis, T. (2010). The effects of plant growth on stream invertebrate communities during low flow: a conceptual model. Journal of the North American Benthological Society , 29(2), 711-724.
Lorenzen, B., Brix, H. & Mendelssohn, I. A. (2004). The effects of phosphorus availability on growth and nutrient uptake kinetics of the two Everglades species, Eleocharis cellulosa and Rhychospora tracyi. Paper presented at The effects of phosphorus availability on growth and nutrient uptake kinetics of the two Everglades species, Eleocharis cellulosa and Rhychospora tracyi.
Dalsgaard, T., Stewart, F., De Brabandere, L., Thamdrup, B., Revsbech, N. P., Canfield, D. E., Bristow, L. A., Ulloa, O., Young, C., Delong, E. & Tiano, L. (2013). The effects of oxygen on process rates and gene expression of anammox and denitrification in the Eastern South Pacific oxygen minimum zone. Abstract from ASLO 2013 Aquatic Sciences Meeting, New Orleans, United States. http://www.aslo.org/meetings/neworleans2013/
O'Loughlin, C., Courtney Jones, S., Jenkins, M. & Gordon, C. E. (2020). The effects of inter-fire interval on flora-fauna interactions in a sub-alpine landscape. Forest Ecology and Management, 473, Article 118316. https://doi.org/10.1016/j.foreco.2020.118316
Pedersen, LD., Bijlsma, R., Pedersen, A. R. & Bundgaard, J. (2011). The effects of inbreeding and heat stress upon male sterility in Drosophila melanogaster. Biological Journal of the Linnean Society, 104, 432-42.