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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Canetti, R., Damgård, I. B., Dziembowski, S., Ishai, Y. & Malkin, T. (2004). Adaptive versus Non-Adaptive Security of Multi-Party Protocols. Journal of Cryptology, 17(3), 153-207. https://doi.org/10.1007/s00145-004-0135-x
Damgård, I. B. & Nielsen, J. B. (2014). Adaptive versus static security in the UC Model. In S. S. M. Chow , J. K. Liu, L. C. K. Hui & S. M. Yiu (Eds.), Provable Security: 8th International Conference, ProvSec 2014, Hong Kong, China, October 9-10, 2014. Proceedings (pp. 10-28). Springer VS. https://doi.org/10.1007/978-3-319-12475-9_2
Asif, M. R., Maurya, P. K., Foged, N. & Christiansen, A. V. (2023). A DATA DRIVEN APPROACH FOR ROBUST INVERSION OF INDUCED POLARIZATION EFFECTS IN TRANSIENT ELECTROMAGNETIC DATA. In APPLICATION OF GEOPHYSICS TO ENGINEERING AND ENVIRONMENTAL PROBLEMS: SYMPOSIUM. 35TH 2023. (SAGEEP 2023) (pp. 82-82). Curran Associates.
Egelund, L. & Pedersen, M. N. (2017). A day on the dig. In A. Lichtenberger & R. Raja (Eds.), Gerasa/Jerash: From the Urban Periphery (pp. 21-26). Fællestrykkeriet SUN Aarhus Universitet.
Reidys, C. M., Huang, F. W., Andersen, J. E., Penner, R., Stadler, P. F. & Nebel, M. E. (2012). Addendum: topology and prediction of RNA pseudoknots. Bioinformatics, 28(2), 300. https://doi.org/10.1093/bioinformatics/btr643
Backes, M., Goldberg, I., Kate, A. & Toft, T. (2012). Adding query privacy to robust DHTs. In ASIACCS '12 Proceedings of the 7th ACM Symposium on Information, Computer and Communications Security (pp. 30-31 ). Association for Computing Machinery. https://doi.org/10.1145/2414456.2414473
Allan, C., Avgustinov, P., Christensen, A. S., Hendren, L., Kuzins, S., Lhot´ak, O., de Moor, O., Sereni, D., Sittampalam, G. & Tibble, J. (2005). Adding Trace Matching with Free Variables to AspectJ. In Proc. 20th International Conference on Object-Oriented Programming Systems, Languages and Applications, OOPSLA 2005 (pp. 345-364)
Fomsgaard, I. S., Añon, M. C., Barba de la Rosa, A. P., Christophersen, C., Dusek, K., Délano-Frier, J., Espinoza Pérez, J., Fonseca, A., Janovská, D., Kudsk, P., Labouriau, R. S., Lacayo Romero, M. L., Martínez, N., Matus, F., Matusová, K., Mathiassen, S. K., Noellemeyer, E. J., Pedersen, H. A., Stavelikova, H. ... Taberner, A. (2010). Adding Value to Holy Grain: Providing the Key Tools for the Exploitation of Amaranth - the Protein-rich Grain of the Aztecs. Results from a Joint European - Latin American ResearchProject. Aarhus Universitet.
Fomsgaard, I. S., Añon, M. C., Barba de la Rosa, A. P., Christophersen, C., Dusek, K., Délano-Frier, J., Espinoza Pérez, J., Fonseca, A., Janovská, D., Kudsk, P. N., Labouriau, R. S., Lacayo Romero, M. L., Martínez, N., Matusová, K., Mathiassen, S. K., Noellemeyer, E. J., Pedersen, H., Stavelikova, H., Steffensen, S. K. ... Taberner, A. (2010). Adding Value to Holy Grain: Providing the Key Tools for the Exploitation of Amaranth - The Protein-rich Grain of the Aztecs: Results from a Joint European - Latin American Research Project. Abstract from Tropentag 2010. World Food System - A contribution from Europe, Zürich, Switzerland.
Torgersen, M., Hansen, C. P., Ernst, E., Ahé, P. V. D., Bracha, G. & Gafter, N. M. (2004). Adding Wildcards to the Java Programming Language. In Proceedings of the 2004 ACM Symposium on Applied Computing (Vol. 104042, pp. 1289-1296). Association for Computing Machinery. https://doi.org/10.1145/967900.968162
Torgersen, M., Hansen, C. P., Ernst, E., von der Ahé, P., Bracha, G. & Gafter, N. M. (2004). Adding Wildcards to the Java Programming Language. Journal of Object Technology, 3(11), 97-116. https://doi.org/10.5381/jot.2004.3.11.a5
Cascudo Pueyo, I., Damgård, I. B., David, B. M., Giacomelli, I., Nielsen, J. B. & Trifiletti, R. (2015). Additively Homomorphic UC commitments with Optimal Amortized Overhead. In J. Katz (Ed.), Public-Key Cryptography, PKC 2015: 18th IACR International Conference on Practice and Theory in Public-Key Cryptography, Gaithersburg, MD, USA, March 30-April 1, 2015, Proceedings (pp. 495–515). Springer. https://doi.org/10.1007/978-3-662-46447-2_22
Zhao, R., Wittig, N. K., De Angelis, G., Yuan, T., Hirsch, M., Birkedal, H. & Amstad, E. (2023). Additive Manufacturing of Porous Biominerals. Advanced Functional Materials, 33(37), Article 2300950. https://doi.org/10.1002/adfm.202300950
Saavedra, D., Fernández, N. & Svenning, J. C. (2023). Addressing challenges for large-scale trophic rewilding. Journal for Nature Conservation, 73, Article 126382. https://doi.org/10.1016/j.jnc.2023.126382
Vilhelmsen, T. N., Marker, P. A., Foged, N., Christiansen, A. V., Auken, E. & Bauer-Gottwein, P. (2016). Addressing Current Challenges on Groundwater Model Structure through Effective Use of Geophysical Data. Abstract from 78th EAGE Conference & Exhibition 2016, Vienna, Austria.
Grønbæk, K., Reich, S., Wiil, U. K., Nürnberg, P. J., Anderson, K. M., Millard, D. E., Haake, J. M. & Davis, H. C. (1999). Addressing Interoperability in Open Hypermedia: The Design of the Open Hypermedia Protocol. New Review of Hypermedia and Multimedia, 5(1), 207-248. https://doi.org/10.1080/13614569908914714
Jørgensen, J. B. (2006). Addressing Problem Frame Concerns Using Coloured Petri Nets and Graphical Animation. International Workshop on Advances and Applications of Problem Frames.
Lassen, J. K. (2025). Addressing sources of variance in large-scale metabolomics. [PhD dissertation, Aarhus University]. Aarhus Universitet, Institut for Molekylærbiologi og genetik.
Hylleberg, J. (1996). Address on the occasion of the 6th TMMP Workshop. Phuket Marine Biological Center. Special Publications, 16, 12.
Hylleberg, J. (1992). Address to participants. Phuket Marine Biological Center. Special Publications, 11, 5-6.
Kristensen, K. & Rasmussen, I. A. (1997). A decision support system for mechanical weed control in malting barley. In Proceedings of the First European Conference for Information Technology in Agriculture (pp. 447-452)
Gori, J., Nioche, A., Johns, C. A. & Oulasvirta, A. (2026). A decision-theoretic representation of assistive interfaces. In N. Oliver, D. A. Shamma, H. Candello, P. Cesar, P. Lopes, A. Bozzon, T. Kosch, V. Liao, X. Ma, V. Artizzu, F. Draxler, G. Lopez, A. V. Reinschluessel, X. Tong & P. O. Toups Dugas (Eds.), CHI 2026 - Proceedings of the 2026 CHI Conference on Human Factors in Computing Systems Article 1138 Association for Computing Machinery. https://doi.org/10.1145/3772318.3791819
Ingstrup, M. & Hansen, K. M. (2005). A Declarative Approach to Architectural Reflection. In R. Nord, N. Medvidovic, R. Krikhaar, J. Stafford & J. Bosch (Eds.), 5th Working IEEE/IFIP Conference on Software Architecture (pp. 149-158). IEEE Computer Society Press. https://doi.org/10.1109/WICSA.2005.6
Andersen, K., Jensen, R. M. & Ajspur, M. L. (2019). A Decomposed Fourier-Motzkin Elimination Framework to Derive Vessel Capacity Models. In 10th ICCL conference (Vol. 11756, pp. 85-100). Springer. https://doi.org/10.1007/978-3-030-31140-7_6
Dupont-Dupuis, F., Szehr, O. & Tomamichel, M. (2014). A decoupling approach to classical data transmission over quantum channels. I E E E Transactions on Information Theory, 60(3), 1562 - 1572 . https://doi.org/10.1109/TIT.2013.2295330
Sandemann, J. R. (2023). A Deep Dive on ZnFe2O4 - and other crystallographic fun. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Patton, P. T., Cheeseman, T., Abe, K., Yamaguchi, T., Reade, W., Southerland, K., Howard, A., Oleson, E. M., Allen, J. B., Ashe, E., Athayde, A., Baird, R. W., Basran, C., Cabrera, E., Calambokidis, J., Cardoso, J., Carroll, E. L., Cesario, A., Cheney, B. J. ... Bejder, L. (2023). A deep learning approach to photo–identification demonstrates high performance on two dozen cetacean species. Methods in Ecology and Evolution, 14(10), 2611-2625. https://doi.org/10.1111/2041-210X.14167
Truica, C.-O., Apostol, E. S., Stefu, T. & Karras, P. (2021). A Deep Learning Architecture for Audience Interest Prediction of News Topic on Social Media. In Y. Velegrakis, D. Zeinalipour-Yazti, P. K. Chrysanthis & F. Guerra (Eds.), Advances in Database Technology - EDBT 2021: 24th International Conference on Extending Database Technology, Proceedings (pp. 588-599). openproceedings.org. https://doi.org/10.5441/002/edbt.2021.69
Bui-Ngoc, T., Ly, D. K., Truong, T. T., Thongchom, C. & Nguyen-Thoi, T. (2024). A deep neural network based surrogate model for damage identification in full-scale structures with incomplete noisy measurements. Frontiers of Structural and Civil Engineering, 18(3), 393-410. https://doi.org/10.1007/s11709-024-1060-8
Nazari, P., Cheung, J. S. Y., Asensio, J. F., Murillo, N. M., Dishoeck, E. F. V., Jørgensen, J. K., Bourke, T. L., Chuang, K. .-J., Drozdovskaya, M. N., Fedoseev, G., Garrod, R. T., Ioppolo, S., Linnartz, H., McGuire, B. A., Müller, H. S. P., Qasim, D. & Wampfler, S. F. (2024). A deep search for large complex organic species toward IRAS16293-2422 B at 3 mm with ALMA. https://doi.org/10.1051/0004-6361/202347832
Wray, K. B. (2023). A Defense of Structure in Structure of Scientific Revolutions. In L. Giri, P. Melogno & H. Miguel (Eds.), Perspectives on Kuhn: Contemporary Approaches to the Philosophy of Thomas Kuhn (pp. 25-40). Springer Nature. https://doi.org/10.1007/978-3-031-16371-5_3

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Verde, C., Giordano, D., Russo, R., Altomonte, G., Viappiani, C., Di Prisco, G., Bruno, S. & Fago, A. (2015). The hemoglobins of the Greenland shark Somniosus microcephalus. Abstract from SEB Annual Main Meeting, Prague, Czech Republic.
Amstrup, A. B., Kovac, H., Käfer, H., Stabentheiner, A. & Sørensen, J. G. (2025). The Heat Shock Response Under Natural Conditions in Two Paper Wasp Species. Insects, 16(8), Article 849. https://doi.org/10.3390/insects16080849
Amstrup, A. B., Kovac, H., Käfer, H., Stabentheiner, A. & Sørensen, J. G. (2024). The heat shock response in Polistes spp. brood from differing climates following heat stress. Journal of Insect Physiology, 156, Article 104667. https://doi.org/10.1016/j.jinsphys.2024.104667
Jensen, B., S. Abe, A., V. Andrade, D., Nyengaard, J. R. & Wang, T. (2010). The heart of the South American rattlesnake, Crotalus durissus: . Journal of Morphology, 271(9), 1066–1077.
Wang, T. & Overgaard, J. (2007). The heartbreak of adapting to global warming. Kexue (Shanghai), 315(49-50).
Bertelsen, M. F., Mohammed, O., Wang, T., Manger, P. R., Scantlebury, D. M., Ismael, K., Bennett, N. C. & Alagaili, A. (2017). The hairy lizard: heterothermia affects anaesthetic requirements in the Arabian oryx (Oryx leucoryx). Veterinary Anaesthesia and Analgesia, 44(4), 899-904. https://doi.org/10.1016/j.vaa.2016.10.005
Weber, R. E., Sullivan, B., Bonaventura, J. & Bonaventura, C. (1977). The haemoglobin systems of the bloodworms Glycera dibranchiata and G. americana. Oxygen binding properties of haemolysates and component haemoglobins. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 58B, 183-187.
Frey, B. J., Weber, R. E., Aardt, W. J. V. & Fago, A. (1998). The haemoglobin system of the mudfish, Labeo capensis: adaptations to temperature and hypoxia. Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology, 120(4), 735-742.
Teske, A., de Beer, D., McKay, L. J., Tivey, M. K., Biddle, J. F., Hoer, D., Lloyd, K. G., Lever, M. A., Røy, H., Albert, D. B., Mendlovitz, H. P. & MacGregor, B. J. (2016). The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats: Complex Seafloor Expressions of Subsurface Hydrothermal Circulation. Frontiers in Microbiology, 7(FEB), Article 75. https://doi.org/10.3389/fmicb.2016.00075
Sands, C. J., Zwerschke, N., Bax, N., Barnes, D. K. A., Moreau, C., Downey, R., Moreno, B., Held, C. & Paulsen, M. (2023). The Growing Potential of Antarctic Blue Carbon. Oceanography, 36(1), 16-17. https://doi.org/10.5670/oceanog.2023.s1.5
Russo, R., Giordano, D., Paredi, G., Marchesani, F., Milazzo, L., Altomonte, G., Del Canale, P., Abbruzzetti, S., Ascenzi, P., Di Prisco, G., Viappiani, C., Fago, A., Bruno, S., Smulevich, G. & Verde, C. (2017). The Greenland shark Somniosus microcephalus -Hemoglobins and ligand-binding properties. PLoS One, 12(10), Article e0186181. https://doi.org/10.1371/journal.pone.0186181
Hatfield, J. H., Allen, B. J., Carroll, T., Dean, C. D., Deng, S., Gordon, J. D., Guillerme, T., Hansford, J. P., Hoyal Cuthill, J. F., Mannion, P. D., Martins, I. S., Payne, A. R. D., Shipley, A., Thomas, C. D., Thompson, J. B., Woods, L. & Davis, K. E. (2025). The Greatest Extinction Event in 66 Million Years? Contextualising Anthropogenic Extinctions. Global Change Biology, 31(9), Article e70476. https://doi.org/10.1111/gcb.70476
Yaworsky, P. M., Vernon, K. B., McCool, W. C., Hart, I. A., Spangler, J. & Codding, B. F. (2024). The Goldilocks Zone for maize agriculture and the settlement and abandonment of the West Tavaputs Plateau. Quaternary International, 689-690, 30-42. https://doi.org/10.1016/j.quaint.2023.12.003
Geuens, E., Tilleman, L., Hoogewijs, D., Kiger, L., Marden, M., Fago, A., Weber, R. E., Vanfleteren, J., Moens, L. & Dewilde, S. (2006). The globin family of C. elegans. In XIV International Conference on Dioxygen Binding and Sensing Proteins.- Stazione Zoologica Anton Dohrn, Naples. September 3-7, 2006. (pp. 69)
Mi, X., Feng, G., Hu, Y., Zhang, J., Chen, L., Corlett, R. T., Hughes, A. C., Pimm, S., Schmid, B., Shi, S., Svenning, J. C. & Ma, K. (2021). The global significance of biodiversity science in China: An overview. National Science Review, 8(7), Article nwab032. https://doi.org/10.1093/nsr/nwab032
Rodríguez, J. P., Fernández-Gracia, J., Duarte, C. M., Irigoien, X. & Eguíluz, V. M. (2021). The global network of ports supporting high seas fishing. Science Advances, 7(9), Article eabe3470. https://doi.org/10.1126/sciadv.abe3470
Kissling, W. D., Baker, W. J., Balslev, H., Barfod, A. S., Borchsenius, F., Dransfield, J., Govaerts, R. & Svenning, J.-C. (2010). The global diversity of palms on island and mainland regions. Abstract from Palms 2010, Montpellier, France.
Mo, L., Crowther, T. W., Maynard, D. S., van den Hoogen, J., Ma, H., Bialic-Murphy, L., Liang, J., de-Miguel, S., Nabuurs, G. J., Reich, P. B., Phillips, O. L., Abegg, M., Adou Yao, Y. C., Alberti, G., Almeyda Zambrano, A. M., Alvarado, B. V., Alvarez-Dávila, E., Alvarez-Loayza, P., Alves, L. F. ... Zohner, C. M. (2024). The global distribution and drivers of wood density and their impact on forest carbon stocks. Nature Ecology and Evolution, 8(12), 2195-2212. Article 2555. https://doi.org/10.1038/s41559-024-02564-9
Ma, H., Crowther, T. W., Mo, L., Maynard, D. S., Renner, S. S., van den Hoogen, J., Zou, Y., Liang, J., de-Miguel, S., Nabuurs, G. J., Reich, P. B., Niinemets, Ü., Abegg, M., Adou Yao, Y. C., Alberti, G., Almeyda Zambrano, A. M., Alvarado, B. V., Alvarez-Dávila, E., Alvarez-Loayza, P. ... Zohner, C. M. (2023). The global biogeography of tree leaf form and habit. Nature Plants, 9(11), 1795–1809. https://doi.org/10.1038/s41477-023-01543-5
Muscarella, R., Emilio, T., Phillips, O. L., Lewis, S. L., Slik, F., Baker, W. J., Couvreur, T. L. P., Eiserhardt, W. L., Svenning, J. C., Aiba, S. I., de Almeida, E. C., de Almeida, S. S., de Oliveira, E. A., Álvarez-Dávila, E., Alves, L. F., Alvez-Valles, C. M., Carvalho, F. A., Guarin, F. A., Andrade, A. ... Balslev, H. (2020). The global abundance of tree palms. Global Ecology and Biogeography, 29(9), 1495-1514. https://doi.org/10.1111/geb.13123
Barfod, A. & Saw, L. G. (2002). The genus Licuala (Arecaceae, Coryphoideae) in Thailand. Kew Bulletin, 57, 827-852.
Meeboonya, R., Ngernsaengsaruay, C., Balslev, H. & Chayamarit, K. (2019). The genus dumasia (fabaceae) in Thailand. Thai Forest Bulletin (Botany), 47(1), 113-120. https://doi.org/10.20531/tfb.2019.47.1.15
Simpson, L., Cantrill, D. J., Byrne, M., Allnutt, T. R., King, G. J., Lum, M., Al Bkhetan, Z., Andrew, R. L., Baker, W. J., Barrett, M. D., Batley, J., Berry, O., Binks, R. M., Bragg, J., Broadhurst, L., Brown, G., Bruhl, J. J., Edwards, R. J., Ferguson, S. ... Crayn, D. M. (2025). The Genomics for Australian Plants (GAP) framework initiative - developing genomic resources for understanding the evolution and conservation of the Australian flora. Australian Systematic Botany, 38(3), Article SB24022. https://doi.org/10.1071/SB24022
Gamba, D., Lorts, C. M., Haile, A., Sahay, S., Lopez, L., Xia, T., Takou, M., Kulesza, E., Elango, D., Kerby, J., Yifru, M., Bulafu, C. E., Wondimu, T., Glowacka, K. & Lasky, J. R. (2024). The genomics and physiology of abiotic stressors associated with global elevational gradients in Arabidopsis thaliana. New Phytologist, 244(5), 2062-2077. https://doi.org/10.1111/nph.20138
Lenzner, B., Beierkuhnlein, C., Patrick, W., Kreft, H. & Steinbauer, M. (2017). The general dynamic model of island biogeography revisited on the level of major plant families. Journal of Biogeography, 44(5), 1029-1040. https://doi.org/10.1111/jbi.12906
Kuypers, M. M. M. & Jørgensen, B. B. (2007). The future of single-cell environmental microbiology. Environmental Microbiology, 9, 6-7.
Grant, D. M., Brodnicke, O. B., Evankow, A. M., Ferreira, A. O., Fontes, J. T., Hansen, A. K., Jensen, M. R., Kalaycı, T. E., Leeper, A., Patil, S. K., Prati, S., Reunamo, A., Roberts, A. J., Shigdel, R., Tyukosova, V., Bendiksby, M., Blaalid, R., Costa, F. O., Hollingsworth, P. M. ... Ekrem, T. (2021). The future of DNA barcoding: Reflections from early career researchers. Diversity, 13(7), Article 313. https://doi.org/10.3390/d13070313
Oliveira, C., Wahlberg, M., Johnson, M., J. O. Miller, P. & Madsen, P. P. T. (2013). The function of male sperm whale slow clicks in a high latitude habitat: Communication, echolocation, or prey debriliation? Acoustical Society of America. Journal, 135(5), 3135-3144. https://doi.org/10.1121/1.4795798
Hicks, J. W. & Nielsen, T. W. (2012). The Functional Significance of the Reptilian Heart: New Insights into an Old Question. In Ontogeny and Phylogeny of the Vertebrate Heart (pp. 207-227). Springer. https://doi.org/10.1007/978-1-4614-3387-3_9
Yan, H., Schmid, B., Xu, W., Bongers, F. J., Chen, G., Tang, T., Wang, Z., Svenning, J. C., Ma, K. & Liu, X. (2024). The functional diversity–productivity relationship of woody plants is climatically sensitive. Ecology and Evolution, 14(5), Article e11364. https://doi.org/10.1002/ece3.11364
Ehlers, B. K. & Olesen, J. M. (1997). The fruit-wasp route to toxic nectar in Epipactis orchids? Flora: Morphology, Distribution, Functional Ecology of Plants, 192, 1-7.
W. Stauffer, F., Barfod, A. S. & Rudall, P. (2008). The flower of Nypa (Nypoideae) and its implications for palm floral evolution. Abstract from The fourth international conference: the comparative biology of the Monocotyledons, Copenhagen.
Brix, H., Koottatep, T., Fryd, O. & Laugesen, C. H. (2009). The flower and the butterfly constructed wetland system at Koh Phi Phi - system design and lessons learnt during implementation and operation. In J. M. Bayona & J. García (Eds.), Ikke angivet (pp. 36-37). Consejo Superior de Investigaciones Cientificas, Ciencia e Investigacion, Universitat Politecnica de Catalunya.
Cedhagen, T. & Sundberg, P. (1986). The first record of a nemertine in the literature. Archives of Natural History, 13(1), 7-8.