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Microbial processes and diversity

Our planet is populated by an immense number of microorganisms. Their activities are essential for the global cycling of elements and the functioning and health of ecosystems and organisms – from plants to humans. In addition, we depend on the activities and products of microorganisms in a multitude of industrial processes including water treatment, energy production, food production and biotechnology.

At Department of Biology, we study the mechanistic details of microbial processes in natural and engineered environments and the biology of the microorganisms that drive them. Such knowledge is fundamental for understanding how element cycles respond to perturbation like climate change and how to manipulate engineered environments to control a given process like e.g. promoting nitrogen removal during wastewater treatment or limiting sulfide production in sewer and oil field systems.

Our research spans all biological levels from single organisms to communities and single ecosystems to global element cycles.


Contact a researcher in Microbial processes and diversity

Trine Bilde

Professor, Centre Director

I am a researcher in evolutionary ecology and genetics and I am interested in group living, cooperation and mating systems, genomic consequences of sociality and inbred mating systems, genetic and non-genetic processes involved in adaptation. I am a professor and center leader of the Center for Ecological Genetics (EcoGenetics) at the Department of Biology. Here we investigate the relationship between genetic diversity and functional responses. We aim to predict the future distribution and performance of insects and the maintenance of population genetic diversity and to provide tools to develop effective management practices in the face of ongoing global change.

Research areas

Behaviour and etology
Spiders
Evolution
Genetics
Population biology
Selection
Ecology
Zoology

Research areas

Freshwater biology
Waterlogged soils
Wetlands
Wastewater purification
Constructed wetlands
Sludge Treatment Reed Beds
Willow systems
Ecophysiology of plants
Nutrient uptake
Effects of anoxia
Photosynthesis
Climatic changes
Methane emission
Carbon sequestration

Lars Riis Damgaard

Member of Administrative Staff

I work with research in microbial ecology, i.e. the mutual interactions between microorganisms and their environment. I am part of Center for Electromicrobiology, where we investigate microorganisms that transport electrons and exchange them with their surroundings with a special focus on cable bacteria. I did my Ph. D. in the development of a methane microsensor and was the technical lead in the startup of the microsensor company Unisense A/S and thus have technical and commercial experience.

Research areas

Microbiology
Sensor technologies
Sensor systems and applications
Modeling and Simulation

Research areas

Astrobiology
Mars
Microbial processes and substance cycles
Ice-nucleating proteins
Microbiology
Microorganisms
Aeromicrobiology

My research field is marine biogeochemistry with emphasis on microbiological and chemical processes in the seabed and their local and global importance. We use experiments with radioactive isotopes combined with chemical analyses to trace element transformations and determine their rate.  We also apply modeling tools and databases to understand  the regulation of element cycles in the seabed in relation to ecology and climate.

Research areas

Microbial ecology
Marine ecosystems
Microbial processes and substance cycles
Sulfur cycle
Methane cycle
Marine biogeochemistry
Nutrient turnover in seabed

Research areas

Biodiversity
Genetics and molecular evolution
Genome Analysis
Microbiology
Molecular microbiology

Research areas

Sensor technologies
Biomonitoring
Analytical chemistry
Oxygen
Environmental chemistry

Research areas

Microbiology
Microbial processes and diversity
Microbial processes and substance cycles
Biotechnology
Microbial ecology
Environmental engineering

Research areas

Coastal waters
Sediment
Biogeochemistry
Nitrogen
Phosphorus
Freshwater
Biogeochemistry
Microbial ecology
Electrochemistry
Microbial electrochemical technologies
Sensor technologies
Microsensors
Biosensors

Research areas

Nanotechnology and Nanoscience
Microbiology
Bacterial adhesion
Environmental Microbiology
Bacteria
Biofilm
Atomic force microscopy (AFM)
Food safety
Nanobiotechnology
Scanning probe microscopy (SPM)

Research areas

Bacteria
Microbiology
Microbial processes and substance cycles
Molecular microbiology
Biotechnology
Microbial processes and diversity

Research areas

Microbiology
Molecular microbiology
Nanotechnology
Molecular ecophysiology
Microbial processes and substance cycles

Research areas

Microbial processes and substance cycles
Cable bacteria
Electromicrobiology

Research areas

Aquatic ecosystems
Arctic environment, nature and ecology
Rivers (including maintenance and ecology
Riverine areas

Name:                                Hans Røy

Position:                              Associate Professor in Biogeochemistry

Institute for Biology, Aarhus University

Nationality:                         Danish

Highest degree:                  Dr. rer. nat., University of Bremen 2003

Homepage:                         https://pure.au.dk/portal/en/persons/hans.roy%40bio.au.dk

Orcid:                                 0000-0002-6477-3091

 

Positions and education

2016-             Associate Professor, Department for Biology, Aarhus University, Denmark.

2007-2016     Scientist, Center for Geomicrobiology, Bioscience, Aarhus University, Denmark.

2005-2007     Scientist, Max Planck Institute for Marine Microbiology, Germany.

2003-2005     Postdoc, Max Planck Institute for Marine Microbiology, Germany.

2003:             Dr. rer nat. from University of Bremen, Earth Sciences, Bremen, Germany.

1999 - 2002   PhD fellow at The Danish Research Academy / Max Planck, Bremen, Germany.

 

SCIENTIFIC FOCUS AREAS

Microbial metabolic activity in aquatic sediment and biogeochemistry. Prokaryotic ecophysiology. The coupled cycles of carbon, nitrogen, iron, manganese, and sulfur. Arctic biogeochemistry. The deep biosphere. Oil-microbe interactions. Self-healing cementitious materials. The ecology of spore-forming bacteria, and their applications in biotechnology. General oceanography.

 

 

FUNDED PROJECTS

2023-2024     PI DHRTC project SEABASS (EUR 250k)

2022-2024     PI AUFF NOVA project “A hidden C02 sink” (EUR 35k, resp. from 2024)

2021-2025     Co-PI FNU project “Seabed methane cycling…” (EUR 831k, resp. from 2024)

2022-2023     PI DHRTC project SEEP-Ecology (EUR 270k)

2018-2020     PI Au science & technology synergy project (EUR 67k)

2017-2020     PI DHRT project “Reservoir Souring” (EUR 447k).

2016-2023     Co-PI DHRT project “Self-Healing Cement” (EUR 903k).

2013              PI DONG project “Microbial Prospecting for Oil and Gas” (EUR 168k).

2013              Co-PI DONG project “Microbial Prospecting for Oil and Gas” (EUR 103k).

 

 

PhD students

Rita Dunker, University of Bremen 2010; Irene H. Tarpgaard, Aarhus University 2013; Paulina Tamez-Hidalgo, Aarhus University 2014; Marion Jaussi, Aarhus University 2017. Søren Dollerrup Nielsen, Aarhus University 2019. Caroline Sholze, Aarhus University 2019.

 

Post docs

Antje Gittel, Søren Dollerup Nielsen, Alberto Scoma, Florian Steinicker, Rishmita Mukherjee, Lorena Selak.

 

Major research curises (marked cruises as chief scientist)

North Atlantic, Arni Fridriksson, 2022 & 2024. Bornholm Basin, RV Aurora, 2022. NW Greenland, Lauge Koch, 2019. NE Greenland, RV Dana, 2017. Bornholm Basin, RV Aurora, 2016. Skagerrak, RV Aurora, 2014. Eastern Atlantic, RV Dana, 2014. West Greenland, RV Sanna, 2013. North Atlantic, RV Dana, 2012. Western Pacific off Japan, DV Chikyu, 2012. Equtorial Pacific from Costa Rica to Hawaii, RV Knorr, 2009. Guaymas Basin, RV Atlantis, 2009. Mid Atlantic Ridge, RV MS Merian, 2006. Arctic North Atlantic. RV L’Atalante, 2005.

 

Bioliometry (ISI-listed)

Total number of peer-reviewed publications: 87

Number of first authorships: 7

Number of corresponding authorships: 10

Number of last authorships: 11

number of citations: 3,898

H-index: 38

Research areas

Aquatic ecosystems
Arctic environment, nature and ecology
Eutrophication
Marine enviroment
Marine ecosystems
Microbial ecology
Oceanography
Environmental biology
Inorganic chemistry
Bacteria
Microbial processes and substance cycles

Research areas

Oceanography
Marine ecology
Arctic

Research areas

Microbial processes and diversity
Microbial processes and substance cycles
Atmospheric environment
Arctic environment, nature and ecology

Andreas Schramm

Professor, Vice Head of Center

I am a microbial ecologist interested in the ecophysiology and evolution of microbes involved in environmental element cycling and in microbe-host interaction. My main research is currently in Electromicrobiology, with focus on how electrically conductive cable bacteria work and impact their environment; and in Microbial Symbiosis, especially in bacteria-fungi-insect interactions, their function and evolution, secondary metabolites, and chemical microenvironments in animals.

Research areas

Microbiology
Environmental Microbiology
Molecular Microbial Ecology
Bacteria
Symbiosis
Biodiversity
Ecology
Evolution
Molecular microbiology

Research areas

Wetlands
Restoration
Greenhouse gases
Carbon
Arctic Ocean
Primary production
Sea ice
Light
Algae
Photosynthesis
Light
Ecophysiology of plants
Carbon assimilation
Gas exchange
Nutrients

Research centers in Microbial processes and diversity

Research group in Microbial processes and diversity