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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Baumeister, H., Cerioli, M., Haxthausen, A., Mossakowski, T., Mosses, P. D., Sannella, D., Tarlecki, A. & Mosses, P. D. (Ed.) (2004). Casl Semantics. In Casl Reference Manual, The Complete Documentation of the Common Algebraic Specification Language (2960 i Lecture Notes in Computer Science ed., pp. 115-271). Springer.
Andersen, P., Beaudouin-Lafon, M., Mackay, W. E., Janecek, P., Lassen, M., Jensen, M., Mortensen, K., Munck, S., Ratzer, A., Ravn, K., Christensen, S., Jensen, K., Colom, J. M. (Ed.) & Koutny, M. (Ed.) (2001). CPN/Tools: A Post-WIMP Interface for Editing and Simulating Coloured Petri Nets. In G. Goos, J. Hartmanis & J. van Leeuwen (Eds.), Applications and Theory of Petri Nets 2001 (Vol. 2075, pp. 71-80). Springer. https://doi.org/10.1007/3-540-45740-2_6
Bender, M. A., Brodal, G. S., Fagerberg, R., Ge, D., He, S., Hu, H., Iacono, J. & López-Ortiz, A. (2003). The Cost of Cache-Oblivious Searching. In Proc. 44th Annual IEEE Symposium on Foundations of Computer Science (FOCS): IEEE Computer Society Press, Washington D.C. (Vol. Session 6, pp. 271-282). IEEE Computer Society Press.
Bendtsen, C. N., Krink, T., Fogel, D. B. (Ed.), Yao, X. (Ed.), Greenwood, G. (Ed.), Iba, H. (Ed.), Marrow, P. (Ed.) & Shackleton, M. (Ed.) (2002). Dynamic Memory Model for Non-Stationary Optimization. In Proceedings of the 2002 Congress on Evolutionary Computation, 2002, CEC '02 (Vol. 1, pp. 145-150). IEEE Press.
Bendtsen, C. N., Krink, T., Fogel, D. B. (Ed.), Yao, X. (Ed.), Greenwood, G. (Ed.), Iba, H. (Ed.), Marrow, P. (Ed.) & Shackleton, M. (Ed.) (2002). Phone Routing using the Dynamic Memory Model. In Proceedings of the 2002 Congress on Evolutionary Computation: CEC '02 (Vol. 1, pp. 992-997). IEEE Press.
Bennedsen, J. & Caspersen, M. E. (2003). Rationale for the Design of a Web-based Programming Course for Adults. In Proccedings of ICOOL 2003 International Conference on Open and Online Learning.
Bennedsen, J. & Caspersen, M. E. (2003). A Model-First Approach to Teaching Introductory Object-Orientation. In Joint proceedings of the Workshops on Multiparadigm Programming with Object-Oriented Languages (MPOOL’03) Declarative Programming in the Context of Object-Oriented Languages (DP-COOL’03): NIC Series (Vol. 27). Dorothea Rohrmann. http://www.intermedia.uio.no/cool/WS-03.html
Bennedsen, J. & Caspersen, M. E. (2004). Programming in Context: A Model-First Approach to CS1. In Proceedings of the 35th SIGCSE technical symposium on Computer science education (pp. 477-481). Association for Computing Machinery. https://doi.org/10.1145/971300.971461
Bennedsen, J. & Caspersen, M. E. (2004). Teaching Object-Oriented Programming - Towards Teaching a Systematic Programming Process. Paper presented at Eighth Workshop on Pedagogies and Tools for the Teaching and Learning of Object Oriented Concepts. Affiliated with 18th European Conference on Object-Oriented Programming (ECOOP 2004), Oslo, Norway.
Bertelsen, O. W., Korpela, M. (Ed.) & Mursu, A. (Ed.) (2004). Activity Walkthrough - A Quick User Interface Evaluation without Users. In Ikke angivet (PB-574 of Daimi Reports ed., pp. 17-21). Aarhus Universitet.
Bertelsen, O. W. (2003). Activity Walkthrough - a cognitive walkthrough in activity theory terms. In M. Hertzum & S. Heilesen (Eds.), Proceedings of Third Danish HCI Research Symposium (pp. 17-20). Roskilde Universitet.
Bertelsen, O. W. (2004). Panel Session: Activity Theory and User Centered Design of IT Systems - the case of the ActAD approach. Session 20; 15:30 - 17:30. 04.09.2004. In Program and Abstracts: Third Nordic Conference on Cultural and Activity Research. 3-5 September 2004. København (Vol. Session 20, pp. 30-30 + 118-120). Danmarks Pædagogiske Universitetsforlag.
Bertelsen, O. W. (2001). Proceedings of the First Danish Human-Computer Interaction Research Symposium. In DAIMI PB-555 (pp. A-59). Department of Computer Science.
Bertelsen, O. W. (2004). The Activity Walkthrough: An Expert Review Method Based on Activity Theory. In Proceedings of the third Nordic conference on Human-computer interaction (pp. 251-254). Association for Computing Machinery. https://doi.org/10.1145/1028014.1028052
Bertelsen, O. W. (2004). Transparency by Tertiary Artefactness. In Workshop on Aesthetic Approaches to Human-Computer Interaction (Vol. DAIMI PB-572, pp. 1-4). Department of Computer Science.
Bertelsen, O. W., Bødker, S. & Caroll, J. M. (Ed.) (2003). Activity Theory. In HCI Models, Theories and Frameworks: Toward an Interdisciplinary Science (Vol. Chapter 11, pp. 291-324). Morgan Kaufmann.
Bertelsen, O. W. & Bødker, S. (2001). Cooperation in massively distributed information spaces. In Proceedings of the seventh conference on European Conference on Computer Supported Cooperative Work (pp. 1-17). Kluwer Academic Publishers. http://www.ecscw.org/2001.htm
Bertelsen, O. W. & Bødker, S. (2002). Interaction through multi-artifacts. In S. Bagnara, S. Pozzi, A. Rizzo & P. K. Wright (Eds.), Proceedings of the 11th European Conference on Cognitive Ergonomics European Association of Cognitive Ergonomcs.
Bertelsen, O. W., Eskildsen, T. & Sperschneider, W. (2003). Programming in the Kitchen. In M. Rauterberg, M. Menozzi & J. Wesson (Eds.), Human-Computer Interaction INTERACT '03: IFIP TC13 International Conference on Human-Computer Interaction: L2-M-3: Empirical Studies (pp. 375-382). IOS Press.
Bertelsen, O. W. & Godsk, M. (2004). WAW - An Activity Theory Based Tool for Early Website Usability Assessment. International Journal of Human Resources Development and Management, 4(1), 73-93.
Bertelsen, O. W., Petersen, M. G. & Pold, S. (Eds.) (2004). Aesthetic Approaches to Human-Computer Interaction: Proceedings of the NordiCHI 2004 Workshop. Aarhus Universitet. Daimi Report Series (DAIMI PB) No. 572
Besenbacher, S., Mailund, T., Westh-Nielsen, L. & Pedersen, C. N. S. (2004). RBT - A Tool for Building Refined Buneman Trees. Bioinformatics, 21(8), 1711-1712.
Bidoit, M. & Mosses, P. D. (Eds.) (2004). Casl User Manual - Introduction to Using the Common Algebraic Specification Language. (2900 i Lecture Notes in Computer Science ed.) Springer.
Biernacka, M., Biernacki, D. & Danvy, O. (2004). An Operational Foundation for Delimited Continuations. In Proceedings of the Fourth ACM SIGPLAN Workshop on Continuations (pp. 25-33). Association for Computing Machinery.
Biernacki, D. & Danvy, O. (2004). From Interpreter to logic Engine by Defunctionalization. In M. Bruynooghe (Ed.), Logic Based Program Synthesis and Transformation: 13th International Symposium, LOPSTR 2003, Uppsala, Sweden, August 25-27, 2003, Revised Selected Papers (pp. 143-159). Springer. https://doi.org/10.1007/978-3-540-25938-1_13
Billington, J., Christensen, S., Hee, K. V., Kindler, E., Kummer, O., Petrucci, L., Post, R., Stehno, C., Weber, M., Aalst, W. M. P. V. D. (Ed.) & Best, E. (Ed.) (2003). The Petri Net Markup Language: Concepts, Technology, and Tools. In Ikke angivet (2679 of Lecture Notes in Computer Science ed., pp. 483-505). Springer.
Billington, J., Gallasch, G. E., Kristensen, L. M. & Mailund, T. (2004). Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States. IEEE Transactions on Systems, Man, and Cybernetics Part A:Systems and Humans, 34(1), 23-37.
Bjerrum, E., Bødker, S., Dourish, P. (Ed.) & Schmidt, K. (Ed.) (2003). Learning and living in the "New office". In K. Kuutti, E. H. Karsten, P. Dourish, G. Fitzpatrick & K. Schmidt (Eds.), Proceedings of the 2003 Eighth European Conference on Computer-Supported Cooperative Work (pp. 199-218). Kluwer Academic Publishers.
Black, A. P., Ernst, E., Grogono, P., Sakkinen, M., Arévalo, G., Crespo, Y., Huchard, M. & Dao, M. (Eds.) (2002). Proceedings of the Inheritance Workshop at ECOOP 2002. In J. Hernández & A. Moreira (Eds.), Object-Oriented Technology ECOOP 2002 Workshop Reader: ECOOP 2002 Workshops and Posters Málaga, Spain, June 10–14, 2002 Proceedings (pp. 117-134). Springer. https://doi.org/10.1007/3-540-36208-8_10
Bouvin, N. O. & Bertelsen, O. W. (Ed.) (2001). Creating and Styling Fluid Annotations on Third-Party Web Pages. In Proceedings of First Danish Human-Computer Interaction Reseach Symposium (DAIMI PB-555 ed., pp. 12-13). Department of Computer Science.
Bouvin, N. O. (2002). Open Hypermedia in a Peer-to-Peer Context. In J. Blustein (Ed.), Proceedings of the thirteenth ACM conference on Hypertext and hypermedia (Vol. SESSION: Next-Gen Open Hypermedia, Part Two, pp. 138-139). Association for Computing Machinery. https://doi.org/10.1145/513338.513373
Bouvin, N. O., Kock Will, U., Larsen, D., De Roure, D. C. & Thomsen, M. K. (2002). Peer-to-Peer Hypertext Panel. In HYPERTEXT 2002: Proceedings of the 13th ACM Conference on Hypertext and Hypermedia (Vol. SESSION: Narratives and Literary Hypertext, pp. 69-71). Society for Industrial and Applied Mathematics.
Bouvin, N. O., Zellweger, P. T., Grønbæk, K. & Mackinlay, J. D. (2002). Fluid annotations through open hypermedia: Using and extending emerging Web standards. In D. Lassner, D. De Roure & A. Iyengar (Eds.), Proceedings of the 11th international conference on World Wide Web (pp. 160-171). Association for Computing Machinery. https://doi.org/10.1145/511446.511468
Brabrand, C., Møller, A. & Schwartzbach, M. I. (2001). Static Validation of Dynamically Generated HTML. In Proceedings of the 2001 ACM SIGPLAN-SIGSOFT workshop on Program analysis for software tools and engineering (pp. 38-45). Association for Computing Machinery. https://doi.org/10.1145/379605.379657
Brabrand, C. & Schwartzbach, M. I. (2002). Growing Languages with Metamorphic Syntax Macros. In P. Thiemann (Ed.), Proceedings of the 2002 ACM SIGPLAN workshop on Partial evaluation and semantics-based program manipulation (pp. 31-40). Association for Computing Machinery. https://doi.org/10.1145/503032.503035
Brabrand, C., Schwartzbach, M. I., Vangaard, M., Bryant, B. R. (Ed.) & Saraiva, J. (Ed.) (2003). The METAFRONT System: Extensible Parsing and Transformation. In LDTA'2003 - Language descriptions, Tools and Applications. Proceedings (pp. 592-611). Elsevier. https://doi.org/10.1016/S1571-0661(05)82622-2
Braga, C. D. O., Haeusler, E. H., Meseguer, J., Mosses, P. D. & Leuschel, M. (Ed.) (2003). Mapping Modular SOS to Rewriting Logic. In Logic Program Synthesis and Transformation: LOPSTR (Lecture Notes in Computer Science ed., Vol. 2664/2003, pp. 262-277). Springer.
Braga, C. D. O., Haeusler, E. H., Meseguer, J. & Mosses, P. D. (2003). Mapping Modular SOS to Rewriting Logic. (pp. 262-277). Springer LNCS.
Brand, M. V. D., Mosses, P. D. & Iversen, J. (2004). An Action Environment. In Proceedings of the Fourth Workshop on Language Descriptions, Tools and Applications (Vol. 110, pp. 149-168). Electronic Notes in Theoretical Computer Science.
Brodal, G. S. (2004). Cache-Oblivious Algorithms and Data Structures. In T. Hagerup & J. Katajainen (Eds.), Algorithm Theory - SWAT 2004: 9th Scandinavian Workshop on Algorithm Theory, Humlebaek, Denmark, July 8-10, 2004. Proceedings (pp. 3-13). Springer. https://doi.org/10.1007/978-3-540-27810-8_2
Brodal, G. S. & Fagerberg, R. (2002). Cache Oblivious Distribution Sweeping. In P. Widmayer, S. Eidenbenz, F. Triguero, R. Morales, R. Conejo & M. Hennessy (Eds.), Automata, Languages and Programming: 29th International Colloquium, ICALP 2002 Málaga, Spain, July 8–13, 2002 Proceedings (pp. 426-438). Springer. https://doi.org/10.1007/3-540-45465-9_37
Brodal, G. S., Fagerberg, R., Bose, P. (Ed.) & Morin, P. (Ed.) (2002). Funnel Heap - A Cache Oblivious Priority Queue. In P. Bose & P. Morin (Eds.), Algorithms and Computation: 13th International Symposium, ISAAC 2002 Vancouver, BC, Canada, November 21–23, 2002 Proceedings (pp. 219-228). Springer. https://doi.org/10.1007/3-540-36136-7_20
Brodal, G. S., Fagerberg, R. & Farach-Colton, M. (Ed.) (2003). Lower Bounds for External Memory Dictionaries. In Proceedings of the fourteenth annual ACM-SIAM symposium on Discrete algorithms (pp. 546-554). Society for Industrial and Applied Mathematics.
Brodal, G. S., Fagerberg, R. & Goemans, M. X. (Ed.) (2003). On the Limits of Cache-Obliviousness. In Proceedings of the thirty-fifth annual ACM symposium on Theory of computing (pp. 307-315). Association for Computing Machinery. https://doi.org/10.1145/780542.780589
Brodal, G. S., Fagerberg, R. & Jacob, R. (2001). Cache Oblivious Search Trees via Binary Trees of Small Height. BRICS Report Series, (RS-01-36), 1-20.

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Mungi, N. A., Qureshi, Q. & Jhala, Y. V. (2023). Distribution, drivers and restoration priorities of plant invasions in India. Journal of Applied Ecology, 60(11), 2400-2412. https://doi.org/10.1111/1365-2664.14506
Aaskov, M. L., Nelson, D., Lauridsen, H., Huong, D. T. T., Ishimatsu, A., Crossley, II, D. A., Malte, H. & Bayley, M. (2023). Do air-breathing fish suffer branchial oxygen loss in hypoxic water? Proceedings of the Royal Society B: Biological Sciences, 290(2006), Article 20231353. https://doi.org/10.1098/rspb.2023.1353
Chen, X., Jähnig, S. C., Jeschke, J. M., Evans, T. G. & He, F. (2023). Do alien species affect native freshwater megafauna? Freshwater Biology, 68(6), 903-914. https://doi.org/10.1111/fwb.14073
Rojano Doñate, L., Lamoni, L., Tougaard, J. & Findlay, C. R. (2023). Effect of Vessel Noise on Marine Mammals and Measures to Reduce Impact. In A. N. Popper, J. A. Sisneros, A. Hawkins & F. Thomsen (Eds.), The Effects of Noise on Aquatic Life: Principles and Practical Considerations Springer. https://doi.org/10.1007/978-3-031-10417-6_138-1
Janyasupab, P., Brix, H. & Jampeetong, A. (2023). Effects of Longan Biochar as Filter Materials on Plant Responses and Wastewater Treatment by Typha angustifolia L. Natural and Life Sciences Communications, 22(3), Article e2023035. https://doi.org/10.12982/NLSC.2023.035
Tougaard, J., Griffiths, E. T., Ladegaard, M., Findlay, C. R., Cosentino, M., Sveegaard, S., Kyhn, L. A., Carlström, J., Owen, K. & Eriksson, P. (2023). Effects of rerouting shipping lanes in Kattegat on the underwater soundscape: Report to the Danish Environmental Protection Agency on EMFF project TANGO. Aarhus University, DCE - Danish Centre for Environment and Energy. Scientific Report from DCE - Danish Centre for Environment and Energy No. 535 http://dce2.au.dk/pub/SR535.pdf
Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N. ... Zhang, G. (2023). Eighty million years of rapid evolution of the primate Y chromosome. Nature Ecology & Evolution, 7(7), 1114-1130. https://doi.org/10.1038/s41559-022-01974-x
Lustermans, J. (2023). Electric interactions with cable bacteria: Community studies of flocking bactera. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Gordon, C. E., Greve, M., Henley, M., Bedetti, A., Allin, P. & Svenning, J. C. (2023). Elephant rewilding affects landscape openness and fauna habitat across a 92-year period. Ecological Applications, 33(3), Article e2810. https://doi.org/10.1002/eap.2810
Glarou, M., Gero, S., Frantzis, A., Brotons, J. M., Vivier, F., Alexiadou, P., Cerdà, M., Pirotta, E. & Christiansen, F. (2023). Estimating body mass of sperm whales from aerial photographs. Marine Mammal Science, 39(1), 251-273. https://doi.org/10.1111/mms.12982
Charlton, C., Christiansen, F., Ward, R., Mackay, A. I., Andrews-Goff, V., Zerbini, A. N., Childerhouse, S., Guggenheimer, S., O'Shannessy, B. & Brownell, R. L. (2023). Evaluating short- to medium-term effects of implantable satellite tags on southern right whales Eubalaena australis. Diseases of Aquatic Organisms, 155, 125-140. https://doi.org/10.3354/dao03730
Hordijk, I., Maynard, D. S., Hart, S. P., Lidong, M., ter Steege, H., Liang, J., de-Miguel, S., Nabuurs, G. J., Reich, P. B., Abegg, M., Adou Yao, C. Y., Alberti, G., Almeyda Zambrano, A. M., Alvarado, B. V., Esteban, A. D., Alvarez-Loayza, P., Alves, L. F., Ammer, C., Antón-Fernández, C. ... Evenness mediates the global relationship between forest productivity and richness (2023). Evenness mediates the global relationship between forest productivity and richness. Journal of Ecology, 111(6), 1308-1326. https://doi.org/10.1111/1365-2745.14098
Joyce, W., Warwicker, J., Shiels, H. A. & Perry, S. F. (2023). Evolution and divergence of teleost adrenergic receptors: why sometimes 'the drugs don't work' in fish. Journal of Experimental Biology, 226(19), Article jeb245859. https://doi.org/10.1242/jeb.245859
Natarajan, C., Signore, A. V., M. Bautista, N., Hoffmann, F. G., Tame, J. R. H., Fago, A. & Storz, J. F. (2023). Evolution and molecular basis of a novel allosteric property of crocodilian hemoglobin. Current Biology, 33(1), 98-108.e4. https://doi.org/10.1016/j.cub.2022.11.049
Rose, C. (2023). Evolutionary ecology of intra- and inter-specific interactions in spiders. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Gunner, R. M., Wilson, R. P., Holton, M. D., Bennett, N. C., Alagaili, A. N., Bertelsen, M. F., Mohammed, O. B., Wang, T., Manger, P. R., Ismael, K. & Scantlebury, D. M. (2023). Examination of head versus body heading may help clarify the extent to which animal movement pathways are structured by environmental cues? Movement Ecology, 11(1), Article 71. https://doi.org/10.1186/s40462-023-00432-y
Nielsen, H. M., Kristensen, T. N., Sahana, G., Laursen, S. F., Bahrndorff, S., Sørensen, J. G. & Hansen, L. S. (2023). Expected response to selection on larval size and development time in the housefly (Musca domestica). Abstract from
74th Annual Meeting of European Federation of Animal Science, Lyon, France.
Smith, B., Crossley, J. L., Conner, J., Elsey, R. M., Wang, T. & Crossley, D. A. (2023). Exposure to hypoxia during embryonic development affects blood flow patterns and heart rate in juvenile American alligators during digestion. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 282, Article 111440. https://doi.org/10.1016/j.cbpa.2023.111440
Porras, M. F., Navas, C. A., Agudelo-Cantero, G. A., Santiago-Martínez, M. G., Loeschcke, V., Sørensen, J. G., Crandall, S. G., Biddinger, D. & Rajotte, E. G. (2023). Extreme heat alters the performance of hosts and pathogen. Frontiers in Ecology and Evolution, 11, Article 1186452. https://doi.org/10.3389/fevo.2023.1186452
Araujo, N. D. S., Perez, R., Willot, Q., Defrance, M. & Aron, S. (2023). Facing lethal temperatures: Heat-shock response in desert and temperate ants. Ecology and Evolution, 13(9), Article e10438. https://doi.org/10.1002/ece3.10438
Funch, P., Kealy, R. A., Goldstein, J., Brewer, J. R., Solovyeva, V. & Riisgård, H. U. (2023). Fate of microplastic captured in the marine demosponge Halichondria panicea. Marine Pollution Bulletin, 194(Part A), Article 115403. https://doi.org/10.1016/j.marpolbul.2023.115403
Pearce, E. A. (2023). Forests before Homo sapiens. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Mendes, S. B., Olesen, J. M., Timóteo, S. & Heleno, R. (2023). Fruiting phenology matters. Plants People Planet, 5(3), 324-328. https://doi.org/10.1002/ppp3.10359
Hansen, M. M. & Tengstedt, A. N. B. (2023). Gamle og nye gåder om den europæiske ål. In Havets Mysterier: myter, virkelighed og videnskab (pp. 235-243). Fiskeri- og Søfartsmuseets Forlag.
Sørensen, E. F., Harris, R. A., Zhang, L., Raveendran, M., Kuderna, L. F. K., Walker, J. A., Storer, J. M., Kuhlwilm, M., Fontsere, C., Seshadri, L., Bergey, C. M., Burrell, A. S., Bergman, J., Phillips-Conroy, J. E., Shiferaw, F., Chiou, K. L., Chuma, I. S., Keyyu, J. D., Fischer, J. ... Rogers, J. (2023). Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons. Science (New York, N.Y.), 380(6648), Article eabn8153. https://doi.org/10.1126/science.abn8153