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Publications

The most recently published scientific articles from the Department of Biology. The overview shows the Department's publications with the latest at the top:

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Baumeister, H., Cerioli, M., Haxthausen, A., Mossakowski, T., Mosses, P. D., Sannella, D., Tarlecki, A. & Mosses, P. D. (Ed.) (2004). Casl Semantics. In Casl Reference Manual, The Complete Documentation of the Common Algebraic Specification Language (2960 i Lecture Notes in Computer Science ed., pp. 115-271). Springer.
Andersen, P., Beaudouin-Lafon, M., Mackay, W. E., Janecek, P., Lassen, M., Jensen, M., Mortensen, K., Munck, S., Ratzer, A., Ravn, K., Christensen, S., Jensen, K., Colom, J. M. (Ed.) & Koutny, M. (Ed.) (2001). CPN/Tools: A Post-WIMP Interface for Editing and Simulating Coloured Petri Nets. In G. Goos, J. Hartmanis & J. van Leeuwen (Eds.), Applications and Theory of Petri Nets 2001 (Vol. 2075, pp. 71-80). Springer. https://doi.org/10.1007/3-540-45740-2_6
Bender, M. A., Brodal, G. S., Fagerberg, R., Ge, D., He, S., Hu, H., Iacono, J. & López-Ortiz, A. (2003). The Cost of Cache-Oblivious Searching. In Proc. 44th Annual IEEE Symposium on Foundations of Computer Science (FOCS): IEEE Computer Society Press, Washington D.C. (Vol. Session 6, pp. 271-282). IEEE Computer Society Press.
Bendtsen, C. N., Krink, T., Fogel, D. B. (Ed.), Yao, X. (Ed.), Greenwood, G. (Ed.), Iba, H. (Ed.), Marrow, P. (Ed.) & Shackleton, M. (Ed.) (2002). Dynamic Memory Model for Non-Stationary Optimization. In Proceedings of the 2002 Congress on Evolutionary Computation, 2002, CEC '02 (Vol. 1, pp. 145-150). IEEE Press.
Bendtsen, C. N., Krink, T., Fogel, D. B. (Ed.), Yao, X. (Ed.), Greenwood, G. (Ed.), Iba, H. (Ed.), Marrow, P. (Ed.) & Shackleton, M. (Ed.) (2002). Phone Routing using the Dynamic Memory Model. In Proceedings of the 2002 Congress on Evolutionary Computation: CEC '02 (Vol. 1, pp. 992-997). IEEE Press.
Bennedsen, J. & Caspersen, M. E. (2003). Rationale for the Design of a Web-based Programming Course for Adults. In Proccedings of ICOOL 2003 International Conference on Open and Online Learning.
Bennedsen, J. & Caspersen, M. E. (2003). A Model-First Approach to Teaching Introductory Object-Orientation. In Joint proceedings of the Workshops on Multiparadigm Programming with Object-Oriented Languages (MPOOL’03) Declarative Programming in the Context of Object-Oriented Languages (DP-COOL’03): NIC Series (Vol. 27). Dorothea Rohrmann. http://www.intermedia.uio.no/cool/WS-03.html
Bennedsen, J. & Caspersen, M. E. (2004). Programming in Context: A Model-First Approach to CS1. In Proceedings of the 35th SIGCSE technical symposium on Computer science education (pp. 477-481). Association for Computing Machinery. https://doi.org/10.1145/971300.971461
Bennedsen, J. & Caspersen, M. E. (2004). Teaching Object-Oriented Programming - Towards Teaching a Systematic Programming Process. Paper presented at Eighth Workshop on Pedagogies and Tools for the Teaching and Learning of Object Oriented Concepts. Affiliated with 18th European Conference on Object-Oriented Programming (ECOOP 2004), Oslo, Norway.
Bertelsen, O. W., Korpela, M. (Ed.) & Mursu, A. (Ed.) (2004). Activity Walkthrough - A Quick User Interface Evaluation without Users. In Ikke angivet (PB-574 of Daimi Reports ed., pp. 17-21). Aarhus University.
Bertelsen, O. W. (2003). Activity Walkthrough - a cognitive walkthrough in activity theory terms. In M. Hertzum & S. Heilesen (Eds.), Proceedings of Third Danish HCI Research Symposium (pp. 17-20). Roskilde Universitet.
Bertelsen, O. W. (2004). Panel Session: Activity Theory and User Centered Design of IT Systems - the case of the ActAD approach. Session 20; 15:30 - 17:30. 04.09.2004. In Program and Abstracts: Third Nordic Conference on Cultural and Activity Research. 3-5 September 2004. København (Vol. Session 20, pp. 30-30 + 118-120). Danmarks Pædagogiske Universitetsforlag.
Bertelsen, O. W. (2001). Proceedings of the First Danish Human-Computer Interaction Research Symposium. In DAIMI PB-555 (pp. A-59). Department of Computer Science.
Bertelsen, O. W. (2004). The Activity Walkthrough: An Expert Review Method Based on Activity Theory. In Proceedings of the third Nordic conference on Human-computer interaction (pp. 251-254). Association for Computing Machinery. https://doi.org/10.1145/1028014.1028052
Bertelsen, O. W. (2004). Transparency by Tertiary Artefactness. In Workshop on Aesthetic Approaches to Human-Computer Interaction (Vol. DAIMI PB-572, pp. 1-4). Department of Computer Science.
Bertelsen, O. W., Bødker, S. & Caroll, J. M. (Ed.) (2003). Activity Theory. In HCI Models, Theories and Frameworks: Toward an Interdisciplinary Science (Vol. Chapter 11, pp. 291-324). Morgan Kaufmann.
Bertelsen, O. W. & Bødker, S. (2001). Cooperation in massively distributed information spaces. In Proceedings of the seventh conference on European Conference on Computer Supported Cooperative Work (pp. 1-17). Kluwer Academic Publishers. http://www.ecscw.org/2001.htm
Bertelsen, O. W. & Bødker, S. (2002). Interaction through multi-artifacts. In S. Bagnara, S. Pozzi, A. Rizzo & P. K. Wright (Eds.), Proceedings of the 11th European Conference on Cognitive Ergonomics European Association of Cognitive Ergonomcs.
Bertelsen, O. W., Eskildsen, T. & Sperschneider, W. (2003). Programming in the Kitchen. In M. Rauterberg, M. Menozzi & J. Wesson (Eds.), Human-Computer Interaction INTERACT '03: IFIP TC13 International Conference on Human-Computer Interaction: L2-M-3: Empirical Studies (pp. 375-382). IOS Press.
Bertelsen, O. W. & Godsk, M. (2004). WAW - An Activity Theory Based Tool for Early Website Usability Assessment. International Journal of Human Resources Development and Management, 4(1), 73-93.
Bertelsen, O. W., Petersen, M. G. & Pold, S. (Eds.) (2004). Aesthetic Approaches to Human-Computer Interaction: Proceedings of the NordiCHI 2004 Workshop. Aarhus University. Daimi Report Series (DAIMI PB) No. 572
Besenbacher, S., Mailund, T., Westh-Nielsen, L. & Pedersen, C. N. S. (2004). RBT - A Tool for Building Refined Buneman Trees. Bioinformatics, 21(8), 1711-1712.
Bidoit, M. & Mosses, P. D. (Eds.) (2004). Casl User Manual - Introduction to Using the Common Algebraic Specification Language. (2900 i Lecture Notes in Computer Science ed.) Springer.
Biernacka, M., Biernacki, D. & Danvy, O. (2004). An Operational Foundation for Delimited Continuations. In Proceedings of the Fourth ACM SIGPLAN Workshop on Continuations (pp. 25-33). Association for Computing Machinery.
Biernacki, D. & Danvy, O. (2004). From Interpreter to logic Engine by Defunctionalization. In M. Bruynooghe (Ed.), Logic Based Program Synthesis and Transformation: 13th International Symposium, LOPSTR 2003, Uppsala, Sweden, August 25-27, 2003, Revised Selected Papers (pp. 143-159). Springer. https://doi.org/10.1007/978-3-540-25938-1_13
Billington, J., Christensen, S., Hee, K. V., Kindler, E., Kummer, O., Petrucci, L., Post, R., Stehno, C., Weber, M., Aalst, W. M. P. V. D. (Ed.) & Best, E. (Ed.) (2003). The Petri Net Markup Language: Concepts, Technology, and Tools. In Ikke angivet (2679 of Lecture Notes in Computer Science ed., pp. 483-505). Springer.
Billington, J., Gallasch, G. E., Kristensen, L. M. & Mailund, T. (2004). Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States. I E E E Transactions on Systems, Man and Cybernetics, Part A: Systems & Humans, 34(1), 23-37.
Bjerrum, E., Bødker, S., Dourish, P. (Ed.) & Schmidt, K. (Ed.) (2003). Learning and living in the "New office". In K. Kuutti, E. H. Karsten, P. Dourish, G. Fitzpatrick & K. Schmidt (Eds.), Proceedings of the 2003 Eighth European Conference on Computer-Supported Cooperative Work (pp. 199-218). Kluwer Academic Publishers.
Black, A. P., Ernst, E., Grogono, P., Sakkinen, M., Arévalo, G., Crespo, Y., Huchard, M. & Dao, M. (Eds.) (2002). Proceedings of the Inheritance Workshop at ECOOP 2002. In J. Hernández & A. Moreira (Eds.), Object-Oriented Technology ECOOP 2002 Workshop Reader: ECOOP 2002 Workshops and Posters Málaga, Spain, June 10–14, 2002 Proceedings (pp. 117-134). Springer. https://doi.org/10.1007/3-540-36208-8_10
Bouvin, N. O. & Bertelsen, O. W. (Ed.) (2001). Creating and Styling Fluid Annotations on Third-Party Web Pages. In Proceedings of First Danish Human-Computer Interaction Reseach Symposium (DAIMI PB-555 ed., pp. 12-13). Department of Computer Science.
Bouvin, N. O. (2002). Open Hypermedia in a Peer-to-Peer Context. In J. Blustein (Ed.), Proceedings of the thirteenth ACM conference on Hypertext and hypermedia (Vol. SESSION: Next-Gen Open Hypermedia, Part Two, pp. 138-139). Association for Computing Machinery. https://doi.org/10.1145/513338.513373
Bouvin, N. O., Kock Will, U., Larsen, D., De Roure, D. C. & Thomsen, M. K. (2002). Peer-to-Peer Hypertext Panel. In HYPERTEXT 2002: Proceedings of the 13th ACM Conference on Hypertext and Hypermedia (Vol. SESSION: Narratives and Literary Hypertext, pp. 69-71). Society for Industrial and Applied Mathematics.
Bouvin, N. O., Zellweger, P. T., Grønbæk, K. & Mackinlay, J. D. (2002). Fluid annotations through open hypermedia: Using and extending emerging Web standards. In D. Lassner, D. De Roure & A. Iyengar (Eds.), Proceedings of the 11th international conference on World Wide Web (pp. 160-171). Association for Computing Machinery. https://doi.org/10.1145/511446.511468
Brabrand, C., Møller, A. & Schwartzbach, M. I. (2001). Static Validation of Dynamically Generated HTML. In Proceedings of the 2001 ACM SIGPLAN-SIGSOFT workshop on Program analysis for software tools and engineering (pp. 38-45). Association for Computing Machinery. https://doi.org/10.1145/379605.379657
Brabrand, C. & Schwartzbach, M. I. (2002). Growing Languages with Metamorphic Syntax Macros. In P. Thiemann (Ed.), Proceedings of the 2002 ACM SIGPLAN workshop on Partial evaluation and semantics-based program manipulation (pp. 31-40). Association for Computing Machinery. https://doi.org/10.1145/503032.503035
Brabrand, C., Schwartzbach, M. I., Vangaard, M., Bryant, B. R. (Ed.) & Saraiva, J. (Ed.) (2003). The METAFRONT System: Extensible Parsing and Transformation. In LDTA'2003 - Language descriptions, Tools and Applications. Proceedings (pp. 592-611). Elsevier. https://doi.org/10.1016/S1571-0661(05)82622-2
Braga, C. D. O., Haeusler, E. H., Meseguer, J., Mosses, P. D. & Leuschel, M. (Ed.) (2003). Mapping Modular SOS to Rewriting Logic. In Logic Program Synthesis and Transformation: LOPSTR (Lecture Notes in Computer Science ed., Vol. 2664/2003, pp. 262-277). Springer.
Braga, C. D. O., Haeusler, E. H., Meseguer, J. & Mosses, P. D. (2003). Mapping Modular SOS to Rewriting Logic. (pp. 262-277). Springer LNCS.
Brand, M. V. D., Mosses, P. D. & Iversen, J. (2004). An Action Environment. In Proceedings of the Fourth Workshop on Language Descriptions, Tools and Applications (Vol. 110, pp. 149-168). Electronic Notes in Theoretical Computer Science.
Brodal, G. S. (2004). Cache-Oblivious Algorithms and Data Structures. In T. Hagerup & J. Katajainen (Eds.), Algorithm Theory - SWAT 2004: 9th Scandinavian Workshop on Algorithm Theory, Humlebaek, Denmark, July 8-10, 2004. Proceedings (pp. 3-13). Springer. https://doi.org/10.1007/978-3-540-27810-8_2
Brodal, G. S. & Fagerberg, R. (2002). Cache Oblivious Distribution Sweeping. In P. Widmayer, S. Eidenbenz, F. Triguero, R. Morales, R. Conejo & M. Hennessy (Eds.), Automata, Languages and Programming: 29th International Colloquium, ICALP 2002 Málaga, Spain, July 8–13, 2002 Proceedings (pp. 426-438). Springer. https://doi.org/10.1007/3-540-45465-9_37
Brodal, G. S., Fagerberg, R., Bose, P. (Ed.) & Morin, P. (Ed.) (2002). Funnel Heap - A Cache Oblivious Priority Queue. In P. Bose & P. Morin (Eds.), Algorithms and Computation: 13th International Symposium, ISAAC 2002 Vancouver, BC, Canada, November 21–23, 2002 Proceedings (pp. 219-228). Springer. https://doi.org/10.1007/3-540-36136-7_20
Brodal, G. S., Fagerberg, R. & Farach-Colton, M. (Ed.) (2003). Lower Bounds for External Memory Dictionaries. In Proceedings of the fourteenth annual ACM-SIAM symposium on Discrete algorithms (pp. 546-554). Society for Industrial and Applied Mathematics.
Brodal, G. S., Fagerberg, R. & Goemans, M. X. (Ed.) (2003). On the Limits of Cache-Obliviousness. In Proceedings of the thirty-fifth annual ACM symposium on Theory of computing (pp. 307-315). Association for Computing Machinery. https://doi.org/10.1145/780542.780589
Brodal, G. S., Fagerberg, R. & Jacob, R. (2001). Cache Oblivious Search Trees via Binary Trees of Small Height. BRICS Report Series, (RS-01-36), 1-20.

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Verdú, M., Garrido, J. L., Alcántara, J. M., Montesinos-Navarro, A., Aguilar, S., Aizen, M. A., Al-Namazi, A. A., Alifriqui, M., Allen, D., Anderson-Teixeira, K. J., Armas, C., Bastida, J. M., Bellido, T., Bonanomi, G., Paterno, G. B., Briceño, H., de Oliveira, R. A. C., Campoy, J. G., Chaieb, G. ... Zamora, R. (2023). RecruitNet: A global database of plant recruitment networks. Ecology, 104(2), Article e3923. https://doi.org/10.1002/ecy.3923
Quadra, G., Boonman, C. C. F., Vroom, R., Temmink, R., Smolders, A., Geurts, J., Aben, R., Weideveld, S. & Fritz, C. (2023). Removing 10 cm of degraded peat mitigates unwanted effects of peatland rewetting: a mesocosm study. Biogeochemistry, 163(1), 65-84. https://doi.org/10.1007/s10533-022-01007-6
Neves, B., Ferreira, P. D. L., Prosdocimi, F., Kessous, I. M., Couto, D. R., Moura, R. L., Salgueiro, F., Costa, A. F., Bacon, C. D. & Antonelli, A. (2023). Repeated evolution of pollination syndromes in a highly diverse bromeliad lineage is correlated with shifts in life form and habitat. Botanical Journal of the Linnean Society, 203(2), 111-122. Article boad015. https://doi.org/10.1093/botlinnean/boad015
M, Z., M, B., S, B., U, C., Vg, C., Marzocchi, U., Pc, M., A, Z. & Es, B. (2023). Role of crab holobionts in benthic N cycling in mangroves with different trophic status. Mar Ecol Prog Ser, 712, 87-99. https://doi.org/10.3354/meps14327
Neuffer, B., Bechsgaard, J., Paetsch, M., Titel, C., Wesse, C., Bona, E., Schimpf, R., Žerdoner Čalasan, A. & Hurka, H. (2023). S-alleles and mating system in natural populations of Capsella grandiflora (Brassicaceae) and its congeneric relatives. Flora: Morphology, Distribution, Functional Ecology of Plants, 299, Article 152206. https://doi.org/10.1016/j.flora.2022.152206
Wallach, A. D., Ramp, D., Benítez-López, A., Wooster, E. I. F., Carroll, S., Carthey, A. J. R., Rogers, E. I. E., Middleton, O., Zawada, K. J. A., Svenning, J. C., Avidor, E. & Lundgren, E. (2023). Savviness of prey to introduced predators. Conservation Biology, 37(2), Article e14012. https://doi.org/10.1111/cobi.14012
Mikkelsen, P. S. (2023). Scoresby Sund: På opdagelse i Nordøstgrønland. Xsirius Books. På opdagelse i Nordøstgrønland / Discovering North-East Greenland Vol. 4
Gimenez-Grau, P., Camarero, L., Palacín-Lizarbe, C., Sala-Faig, M., Zufiaurre, A., Pla-Rabes, S., Felip, M. & Catalan, J. (2023). Self-filling enclosures to experimentally assess plankton response to pulse nutrient enrichments. Journal of Plankton Research, 45(2), 266-277. https://doi.org/10.1093/plankt/fbac074
Steininger, F. (2023). Sensing of pH-Dependent Analytes. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Merl, T. (2023). Sensing Soil Processes - Visualizing Ammonia Dynamics and Soil Microenvironments. [PhD dissertation, Aarhus University]. Aarhus Universitet.
Hoeks, S., Huijbregts, M. A. J., Boonman, C. C. F., Faurby, S., Svenning, J.-C., Harfoot, M. B. J. & Santini, L. (2023). Shifts in ecosystem equilibria following trophic rewilding. Diversity and Distributions, 29(12), 1512-1526. https://doi.org/10.1111/ddi.13786
Istenic, D. & Arias, C. A. (2023). Sistemas evaporativos con sauces. In Soluciones basadas en la naturaleza para el tratamiento de aguas residuales (pp. 46-49). IWA Publishing.
Gonzalez-Flo, E., Ortiz, A., A. Arias, C., Díez-Montero, R., Kohlheb, N., Schauser, U. H., García, J. & Gregersen, P. K. S. (2023). Sludge Treatment Wetland for Treating Microalgae Digestate Grown in Agricultural Runoff: A Technical, Economic, and Environmental Assessment. Water, 15(12), Article 2159. https://doi.org/10.3390/w15122159
Alexander, G. J. & Wang, T. (2023). Snake foraging ecology and digestive physiology: Integrative biology and evolving paradigms. In D. Penning (Ed.), Snakes: Morphology, Function, and Ecology (pp. 313-342). Nova Science Publishers. https://doi.org/10.52305/YHUZ3307
Cirtwill, A. R., Kaartinen, R., Rasmussen, C., Redr, D., Wirta, H., Olesen, J. M., Tiusanen, M., Ballantyne, G., Cunnold, H., Stone, G. N., Schmidt, N. M. & Roslin, T. (2023). Stable pollination service in a generalist high Arctic community despite the warming climate. Ecological Monographs, 93(1), Article e1551. https://doi.org/10.1002/ecm.1551
Kettisen, K., Nyblom, M., Smeds, E., Fago, A. & Bülow, L. (2023). Structural and oxidative investigation of a recombinant high-yielding fetal hemoglobin mutant. Frontiers in Molecular Biosciences, 10, Article 1133985. https://doi.org/10.3389/fmolb.2023.1133985
Pearce, E. A., Mazier, F., Normand, S., Fyfe, R., Andrieu, V., Bakels, C., Balwierz, Z., Bińka, K., Boreham, S., Borisova, O. K., Brostrom, A., de Beaulieu, J. L., Gao, C., González-Sampériz, P., Granoszewski, W., Hrynowiecka, A., Kołaczek, P., Kuneš, P., Magri, D. ... Svenning, J. C. (2023). Substantial light woodland and open vegetation characterized the temperate forest biome before Homo sapiens. Science Advances, 9(45), Article eadi9135. https://doi.org/10.1126/sciadv.adi9135
Daussin, A., Vannier, P., Mater, É., Šantl-Temkiv, T., Cockell, C. & Marteinsson, V. Þ. (2023). Survival of Icelandic airborne microbes towards simulated atmospheric stress factors. Extremophiles, 27(2), Article 17. https://doi.org/10.1007/s00792-023-01302-6
Tougaard, J., Beedholm, K. & Madsen, P. P. T. (2023). Temporary Threshold Shift in Porpoise Hearing: Effect of Experimental Protocol. In A. N. Popper, J. A. Sisneros, A. Hawkins & F. Thomsen (Eds.), The Effects of Noise on Aquatic Life: Principles and Practical Considerations Springer. https://doi.org/10.1007/978-3-031-10417-6_166-1
Aalkjær, C. & Wang, T. (2023). The cardiovascular challenges in giraffes. Journal of Muscle Research and Cell Motility, 44(2), 53-60. https://doi.org/10.1007/s10974-022-09626-0
Šímová, I., Ordonez, A. & Storch, D. (2023). The dynamics of the diversity–energy relationship during the last 21,000 years. Global Ecology and Biogeography, 32(5), 707-718. https://doi.org/10.1111/geb.13649
Schlafer, S., K. Johnsen, K., Jørgensen, M.-R., Kjærbølling, I., Schramm, A. & Meyer, R. L. (2023). The effect of an enzyme-containing lozenge on dental biofilm accumulation: A clinical pilot study. Abstract from ORCA: 70th Congress of the European Organization for Caries Research, Egmond aan Zee, Netherlands.
Ma, H., Crowther, T. W., Mo, L., Maynard, D. S., Renner, S. S., van den Hoogen, J., Zou, Y., Liang, J., de-Miguel, S., Nabuurs, G. J., Reich, P. B., Niinemets, Ü., Abegg, M., Adou Yao, Y. C., Alberti, G., Almeyda Zambrano, A. M., Alvarado, B. V., Alvarez-Dávila, E., Alvarez-Loayza, P. ... Zohner, C. M. (2023). The global biogeography of tree leaf form and habit. Nature Plants, 9(11), 1795–1809. https://doi.org/10.1038/s41477-023-01543-5
Sands, C. J., Zwerschke, N., Bax, N., Barnes, D. K. A., Moreau, C., Downey, R., Moreno, B., Held, C. & Paulsen, M. (2023). The Growing Potential of Antarctic Blue Carbon. Oceanography, 36(1), 16-17. https://doi.org/10.5670/oceanog.2023.s1.5
Kristensen, J. A. & Breuning-Madsen, H. (2023). The landscape and soil fertility around the Jelling Monuments. In A. Pedersen (Ed.), Jelling – Monuments and Landscape, Publications from the National Museum: Studies in Archaeology & History (Vol. Vol. 20:4 1-2).