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Publikationer

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Schultz, U. P., Burgaard, K., Christensen, F. G. & Knudsen, J. L. (2003). Compiling Java for low-end embedded systems. I Proceedings of the 2003 ACM SIGPLAN conference on Languages, compilers, and tools for embedded systems (s. 42-50). Association for Computing Machinery.
Schultz, U. P., Lawall, J. L. & Consel, C. (2003). Automatic program specialization for Java. ACM Transactions on Programming Langauges and Systems (TOPLAS), 25(4), 452-499.
Schwartzbach, M. I. (2003). Rapport om datalogi i gymnasiet. Undervisningsministeriet.
Srba, J., Guldstrand Larsen, K. (red.) & Nielsen, M. (red.) (2001). On the Power of Labels in Transition Systems. I Lecture Notes in Computer Science: Proceedings of the 12th International Conference on Concurrency Theory (2154 of Lecture Notes in Computer Science udg., Bind 2154/2001, s. 277-291). Springer.
Brodal, G. S., Fagerberg, R., Pedersen, C. N. S., Östlin, A., Orejas, F. (red.), Spirakis, P. G. (red.) & Leeuwen, J. V. (red.) (2001). The Complexity of Constructing Evolutionary Trees Using Experiments. I Lecture Notes In Computer Science; Vol. 2076: Proceedings of the 28th International Colloquium on Automata, Languages and Programming (2076 of Lecture Notes in Computer Science udg., Bind 2076/2001, s. 140-151). Springer.
Thomsen, R., Guervós, J. J. M. (red.), Adamidis, P. (red.), Beyer, H.-G. (red.), Fernández-Villacañas, J. L. (red.) & Schwefel, H.-P. (red.) (2002). Evolving the Topology of Hidden Markov Models using Evolutionary Algorithms. I Proceedings of the 7th International Conference on Parallel Problem Solving from Nature: Parallel Problem Solving from Nature --- PPSN VII (Lecture Notes in Computer Science udg., Bind 2439/2002, s. 861-870). Springer.
Thomsen, R. (2003). Flexible Ligand Docking Using Differential Evolution. I R. Sarker, R. Reynolds, H. Abbass, K. Chen Tan, B. McKay, D. Essam & T. Gedeon (red.), The 2003 Congress on Evolutionary Computation, CEC '03 (Bind 4, s. 2354-2361). IEEE Press.
Thomsen, R., Boomsma, W., Raidl, G. R. (red.), Cagnoni, S. (red.), Branke, J. (red.), Corne, D. (red.), Drechsler, R. (red.), Jin, Y. (red.), Johnson, C. G. (red.), Machado, P. (red.), Marchiori, E. (red.), Rothlauf, F. (red.), Smith, G. D. (red.) & Squillero, G. (red.) (2004). Multiple Sequence Alignment Using SAGA: Investigating the Effects of Operator Scheduling, Population Seeding, and Crossover Operators. I Applications of Evolutionary Computing (3005 i Lecture Notes in Computer Science udg., s. 113-122). Springer.
Thomsen, R., Fogel, G. B., Krink, T., Fogel, D. B. (red.), Yao, X. (red.), Greenwood, G. (red.), Iba, H. (red.), Marrow, P. (red.) & Shackleton, M. (red.) (2002). A Clustal Alignment Improver Using Evolutionary Algorithms. I Proceedings of the 2002 Congress on evolutionary Computation, 2002. CEC '02 (Bind 1, s. 121-126). IEEE Press.
Thomsen, R., Fogel, G. B. & Krink, T. (2003). Improvement of Clustal-Derived Sequence Alignments with Evolutionary Algorithms. I 2003 Congress on Evolutionary Computation (s. 1499-1507). IEEE Press.
Thomsen, R., Krink, T., Guervós, J. J. M. (red.), Adamidis, P. (red.), Beyer, H.-G. (red.), Fernández-Villacañas, J.-L. (red.) & Schwefel, H.-P. (red.) (2002). Self-Adaptive Operator Scheduling using the Religion-Based EA. I Lecture Notes in Computer Science: Parallel Problem Solving from Nature - PPSN VII (2439 of Lecture Notes in Computer Science udg., Bind 2439/-1 / 2002, s. 214-223). Springer.
Torgersen, M. (2002). Inheritance is Specialisation. I A. P. Black, E. Ernst, P. Grogono & M. Sakkinen (red.), Object-oriented Technology ECOOP 2002 Workshop Reader (Bind 12, s. 95-101). Springer LNCS.
Torgersen, M. & Odersky, M. (red.) (2004). The Expression Problem Revisited - Four New Solutions using Generics. I Proceedings of the 18th European Conference on Object-Oriented Programming (ECOOP'04) (3086 i Lecture Notes in Computer Science udg., s. 123-146). Springer.
Torgersen, M. (2001). Unifying Abstractions. (DAIMI PhD Dissertation PD-01-2 udg.) Department of Computer Science.
Ursem, R. K., Filipic, B. & Krink, T. (2002). Exploring the Performance of an Evolutionary Algorithm for Greenhouse Control. Journal of Computing and Information Technology, 10(3), 195-201.
Ursem, R. K., Krink, T., Fogel, D. B. (red.), Yao, X. (red.), Greenwood, G. (red.), Iba, H. (red.), Marrow, P. (red.) & Shackleton, M. (red.) (2002). Genetic Programming with Smooth Operators for Arithmetic Expressions: Diviplication and Subdition. I Proceedings of the Evolutionary on Computation 2002.: CEC'02 (Bind 2, s. 1372-1377). IEEE Computer Society Press.
Ursem, R. K., Krink, T. & Filipic, B. (2002). A Numerical Simulator for a Crop-Producing Greenhouse. EVALife Technical Report, (2002-01).
Ursem, R. K., Krink, T., Jensen, M. T. & Michalewicz, Z. (2002). Analysis and Modeling of Control Tasks in Dynamic Systems. I E E E Transactions on Evolutionary Computation, 6(4), 378-389.
Varacca, D., Völzer, H., Winskel, G., Gardner, P. (red.) & Yoshida, N. (red.) (2004). Probabilistic Event Structures and Domains. I Ikke angivet (3170 i Lecture Notes in Computer Science udg., s. 481-496). Springer.
Vesterstrøm, J. S. (2003). Physical Mapping Using Simulated Annealing and Evolutionary Algorithms. I Proceedings of the IEEE Congress on Evolutionary Computation, CEC 2003, 8 -12 December 2003, Canberra, Australien (Bind 1, s. 327- 334). IEEE Press.
Vesterstrøm, J. S. & Riget, J. (2002). A Diversity-Guided Particle Swarm Optimizer - the ARPSO. EVALife Technical Report, (2002-02).
Vesterstrøm, J. S., Riget, J., Krink, T., Fogel, D. B. (red.), Yao, X. (red.), Greenwood, G. (red.), Iba, H. (red.), Marrow, P. (red.) & Shackleton, M. (red.) (2002). Division of Labor in Particle Swarm Optimisation. I Ikke angivet (s. 1570-1575). IEEE Press.
Wagealla, W., Carbone, M., English, C., Terzis, S., Lowe, H., Nixon, P., Dimitrakos, T. (red.) & Martinelli, F. (red.) (2004). A Formal Model for Trust Lifecycle Management. I Proceedings of IEEE International Conference on Software Engineering and Formal Methods (SEFM '03), 2003. (s. 181-192). IIT-CNR.
Wells, L. M., Boukerche, A. (red.), Das, S. K. (red.) & Majumdar, S. (red.) (2002). Performance Analysis Using Coloured Petri Nets. I Proceedings, 10th IEEE International Symposium on Modeling, Analysis and Simulation of Computer and Telecommunications Systems, 2002 (s. 217-221). IEEE Computer Society Press.
Wells, L., Christensen, S., Kristensen, L. M., Mortensen, K. H., German, R. (red.) & Haverkort, B. (red.) (2001). Simulation Based Performance Analysis of Web Servers. I Proceedings of 9th International Workshop on Petri Nets and Performance Models (s. 59-68). IEEE Computer Society Press.
Westergaard, M. & Kindler, E. (red.) (2004). Towards a High-level Petri Net Type Type Definition. I Proceeding of the Workshop on the Definition, Implementation and Application of a Standard Interchange Format for Petri Nets
Winskel, G., Ésik, Z. (red.) & Ingólfsdóttir, A. (red.) (2002). Calculus for Categories. I Fixed Points in Computer Science (NS-02-2 of Notes Series udg., s. 20-21).
Winskel, G., Ehrhard, T. (red.), Girard, J. (red.), Ruet, P. (red.) & Scot, P. (red.) (2004). Linearity and Nonlinearity in Distributed Computation. I Linear Logic in Computer Science (316 of London Math. Soc. Lecture Note Series udg., s. 151-188). Cambridge University Press.
Winskel, G. (2003). Presheaf models for CCS-like languages. Theoretical Computer Science, 300(1-3), 47-89.
Winskel, G., Zappa Nardelli, F., Lévy, J. (red.), Mayr, E. (red.) & Mitchell, J. (red.) (2004). New-HOPLA: A Higher-Order Process Language with Name Generation. I Ikke angivet (s. 521-534). Kluwer Academic Publishers.
Mogensen, P. H. (red.) (2004). Documentation of Appliances & Interaction Devices: Deliverable 16. I EU,IST, FET, DC project, Workspace: Distributed Work support through component based SPAtial Computing Environments (Deliverable 16 udg., Bind WS-UAA-20, s. 1-22). Datalogisk Institut, Aarhus Universitet. http://www.daimi.au.dk/workspace/Deliverables/WS-D16-v1-0.pdf
Workspace & Mogensen, P. H. (red.) (2003). Documentation of Infrastructure. I EU,IST, FET, DC project, Workspace: Distributed Work support through component based SPAtial Computing Environments  IST-2000-25290 (17 - WS-UAA-21 udg., Bind WS-D17-v1-0, s. 1-28). Datalogisk Institut. http://www.daimi.au.dk/workspace/Deliverables/WS-D17-v1-0.pdf
Workspace & Mogensen, P. H. (red.) (2003). Final Demonstrator Status: Deliverable 5: Status report, month 36. I EU,IST, FET, DC project, Workspace: IST-2000-25290:Distributed Work support through component based SPAtial Computing Environments (Deliverable 5 udg., Bind WS-D5-v1, s. 1-46). Datalogisk Institut. http://www.daimi.au.dk/workspace/Deliverables/WS-D5-v1.0.pdf
Workspace & Mogensen, P. H. (red.) (2003). Final Evaluations: Deliverable 18; I EU,IST, FET, DC project, Workspace: Distributed Work support through component based SPAtial Computing Environments (Deliverable 18 udg., Bind WS-UAA-22, s. 1-29). Datalogisk Institut. http://www.daimi.au.dk/workspace/Deliverables/WS-D18-v1-0.pdf
Workspace & Mogensen, P. H. (red.) (2003). Final Project Report. I EU,IST, FET, DC project, Workspace: Distributed Work support through component based SPAtial Computing Environments (Final Report udg., Bind WS-UAA-23, s. 1-7). Datalogisk Institut. http://www.daimi.au.dk/workspace/Deliverables/WS-FinalReportV1-0.pdf
Zellweger, P. T., Bouvin, N. O., Jehøj, H. & Mackinlay, J. D. (2001). Fluid Annotations in a Open World. I K. Grønbæk, H. Davis & Y. Douglas (red.), Proceedings of the twelfth ACM conference on Hypertext and Hypermedia (s. 9-18). Association for Computing Machinery. https://doi.org/10.1145/504216.504224
Zimmer, P. (2004). Using Ambients to Control Resources. International Journal of Information Security, 2(3-4), 126-144.
van den Brand, M., Iversen, J., Mosses, P. D., Hedin, G. (red.) & Van Wyk, E. (red.) (2004). An Action Environment. I Proceedings of the Fourth Workshop on Language Descriptions, Tools, and Applications (Bind 110, s. 149-168). Elsevier.
van den Brand, M., Iversen, J., Mosses, P. D., Hedin, G. (red.) & Van Wyk, E. (red.) (2004). The Action Environment: Tool Demonstration. I Ikke angivet (s. 177-180). Elsevier.
Ackermann, M. D., Pedersen, T. M., Henriksen, B. L. M., Robach, O., Bobaru, S. C., Popa, I., Quiros, C., Kim, H., Hammer, B., Ferrer, S. & Frenken, J. W. M. (2005). Structure and reactivity of surface oxides on Pt(110) during catalytic CO Oxidation. Physical Review Letters, 95.
Aerts, C., Baglin, A., Christensen-Dalsgaard, J., Goupil, M., Houdek, G., Kjeldsen, H., Kollath, Z., Kurtz, D., Lebreton, Y., Maceroni, C., Noels, A., Schwarzenberg-Czerny, A., Skoda, P., Solano, E. & Thompson, M. J. (2004). "ENEAS": the European Network of Excellence in AsteroSeismology. I Second Eddington Workshop: Stellar structure and habitable planet finding. 9.-11. april 2003 (s. 247-250)
Aerts, C., Handler, G., Arentoft, T., Vandenbussche, B., Medupe, R. & Sterken, C. (2002). The delta Scuti star XX Pyx as an ellipsoidal variable. Royal Astronomical Society. Monthly Notices, 333, 35-39.
Aerts, C. M., Strange, P., Horne, M., Temmerman, W. M., Szotek, Z. & Svane, A. (2004). Half-metallic to insulating behavior of rare-earth nitrides. Physical Review B, 69, 045115-1.
Africh, C., Esch, F., Li, W. X., Corso, M., Hammer, B., Rosei, R. & Comelli, G. (2004). Two-step reaction on a strained, nanoscale segmented surface. Physical Review Letters, 93(12), 126104. http://www.phys.au.dk/~hammer/77.pdf
Afrosimov, V. V., Basalaev, A. A., Fastrup, B., Horsdal, E., Panov, M. N., Tulub, A. V. & Yakovlev, D. S. (2003). Ionization and fragmentation of Freon-12 molecules in collisions with protons. J. Phys. B: At. Mol. Opt. Phys., 36, 1991-2000.

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Torres, L. G., Bird, C. N., Rodríguez-González, F., Christiansen, F., Bejder, L., Lemos, L., Urban R, J., Swartz, S., Willoughby, A., Hewitt, J. & Bierlich, K. C. (2022). Range-Wide Comparison of Gray Whale Body Condition Reveals Contrasting Sub-Population Health Characteristics and Vulnerability to Environmental Change. Frontiers in Marine Science, 9, Artikel 867258. https://doi.org/10.3389/fmars.2022.867258
Beulig, F., Schubert, F., Adhikari, R. R., Glombitza, C., Heuer, V. B., Hinrichs, K. U., Homola, K. L., Inagaki, F., Jørgensen, B. B., Kallmeyer, J., Krause, S. J. E., Morono, Y., Sauvage, J., Spivack, A. J. & Treude, T. (2022). Rapid metabolism fosters microbial survival in the deep, hot subseafloor biosphere. Nature Communications, 13(1), Artikel 312. https://doi.org/10.1038/s41467-021-27802-7
Vera-Puerto, I., Valdés, H., Bueno, M., Correa, C., Olave, J., Carrasco-Benavides, M., Schiappacasse, F. & Arias, C. A. (2022). Reclamation of Treated Wastewater for Irrigation in Chile: Perspectives of the Current State and Challenges. Water, 14(4), Artikel 627. https://doi.org/10.3390/w14040627
Garzon-Lopez, C. X., Barcenas, E. M., Ordoñez, A., Jansen, P. A., Bohlman, S. A. & Olff, H. (2022). Recruitment limitation in three large-seeded plant species in a tropical moist forest. Biotropica, 54(2), 418-430. https://doi.org/10.1111/btp.13063
Bullington, J. A., Golder, A. R., Steward, G. F., McManus, M. A., Neuheimer, A. B., Glazer, B. T., Nigro, O. D. & Nelson, C. E. (2022). Refining real-time predictions of Vibrio vulnificus concentrations in a tropical urban estuary by incorporating dissolved organic matter dynamics. Science of the Total Environment, 829, Artikel 154075. https://doi.org/10.1016/j.scitotenv.2022.154075
Joyce, W., Pan, Y. K., Garvey, K., Saxena, V. & Perry, SF. (2022). Regulation of heart rate following genetic deletion of the ß1 adrenergic receptor in larval zebrafish. Acta Physiologica, 235(4), Artikel e13849. https://doi.org/10.1111/apha.13849
Leslie, M. S., Kant, L., Perkins-Taylor, C., Van Bressem, M. F., Minton, G., MacDonald, D., Christiansen, F., Willson, M. S., Collins, T., Baldwin, R., Al Harthi, S. & Willson, A. (2022). Remote and non-invasive quantification of ‘Tattoo Skin Disease-Like’ dermatopathy in endangered Arabian Sea humpback whales using drone photography. Mammalian Biology, 102(4), 1605-1617. https://doi.org/10.1007/s42991-022-00337-0
Urbanič, G., Politti, E., Rodríguez-González, P. M., Payne, R., Schook, D., Alves, M. H., Anđelković, A., Bruno, D., Chilikova-Lubomirova, M., Di Lonardo, S., Egozi, R., Garófano-Gómez, V., Gomes Marques, I., González del Tánago, M., Gültekin, Y. S., Gumiero, B., Hellsten, S., Hinkov, G., Jakubínský, J. ... Dufour, S. (2022). Riparian Zones—From Policy Neglected to Policy Integrated. Frontiers in Environmental Science, 10, Artikel 868527. https://doi.org/10.3389/fenvs.2022.868527
Segre, P. S., Gough, W. T., Roualdes, E. A., Cade, D. E., Czapanskiy, M. F., Fahlbusch, J., Kahane-Rapport, S. R., Oestreich, W. K., Bejder, L., Bierlich, K. C., Burrows, J. A., Calambokidis, J., Chenoweth, E. M., di Clemente, J., Durban, J. W., Fearnbach, H., Fish, F. E., Friedlaender, A. S., Hegelund, P. ... Goldbogen, J. A. (2022). Scaling of maneuvering performance in baleen whales: larger whales outperform expectations. Journal of Experimental Biology, 225(5), Artikel jeb243224. https://doi.org/10.1242/jeb.243224
Colgan, W., Henriksen, H. J., Bennike, O., Ribeiro, S., Seidenfaden, I. K., Graversgaard, M., Busck, A. G., Fruergaard, M., Knudsen, M. H., Hopper, J., Sonnenborg, T., Skjerbæk, M. R., Bjørk, A. A., Steffen, H., Tarasov, L., Nerem, R. S. & Kjeldsen, K. K. (2022). Sea-level rise in Denmark: paleo context, recent projections and policy implications. GEUS Bulletin, 49, Artikel 8315. https://doi.org/10.34194/geusb.v49.8315
Bierlich, K. C., Hewitt, J., Schick, R. S., Pallin, L., Dale, J., Friedlaender, A. S., Christiansen, F., Sprogis, K. R., Dawn, A. H., Bird, C. N., Larsen, G. D., Nichols, R., Shero, M. R., Goldbogen, J., Read, A. J. & Johnston, D. W. (2022). Seasonal gain in body condition of foraging humpback whales along the Western Antarctic Peninsula. Frontiers in Marine Science, 9, Artikel 1036860. https://doi.org/10.3389/fmars.2022.1036860
Jørgensen, B. B., Wenzhoefer, F., Egger, M. & Glud, R. N. (2022). Sediment oxygen consumption: Role in the global marine carbon cycle. Earth-Science Reviews, 228, Artikel 103987. https://doi.org/10.1016/j.earscirev.2022.103987
Maeda, E. E., Nunes, M. H., Calders, K., de Moura, Y. M., Raumonen, P., Tuomisto, H., Verley, P., Vincent, G., Zuquim, G. & Camargo, J. L. (2022). Shifts in structural diversity of Amazonian forest edges detected using terrestrial laser scanning. Remote Sensing of Environment, 271, Artikel 112895. https://doi.org/10.1016/j.rse.2022.112895
Rindom, E., Ahrenfeldt, M., Damgaard, J., Overgaard, K. & Wang, T. (2022). Short communication: Leucine, but not muscle contractions, stimulates protein synthesis in isolated EDL muscles from golden geckos. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 268, Artikel 111206. https://doi.org/10.1016/j.cbpa.2022.111206
Jensen, M. R., Sigsgaard, E. E., de Paula Avila, M., Agersnap, S., Larsen, W. B., Sengupta, M. E., Xing, Y., Krag, M. A., Knudsen, S. W., Carl, H., Moller, P. R. & Thomsen, P. F. (2022). Short-term temporal variation of coastal marine eDNA. Environmental DNA, 4(4), 747-762. https://doi.org/10.1002/edn3.285
Ahmerkamp, S., Jalaluddin, F. M., Cui, Y., Brumley, D. R., Pacherres, C. O., Berg, J. S., Stocker, R., Kuypers, M. M. M., Koren, K. & Behrendt, L. (2022). Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems. Cell Reports Methods, 2(5), Artikel 100216. https://doi.org/10.1016/j.crmeth.2022.100216
Boe, A. M. B., Simonsen, T. J., Colding-Jørgensen, C. T., Folman, P. H., Jensen, T. T., Spencer, K. J., Thomsen, P. F. & Nash, D. R. (2022). Spatial and Temporal Patterns of Genetic Diversity and Structure in Danish Populations of the Alcon Blue Butterfly Phengaris alcon (Denis & Schiffermüller). Diversity, 14(12), Artikel 1098. https://doi.org/10.3390/d14121098
Avci, B., Brandt, J., Nachmias, D., Elia, N., Albertsen, M., Ettema, T. J. G., Schramm, A. & Kjeldsen, K. U. (2022). Spatial separation of ribosomes and DNA in Asgard archaeal cells. ISME Journal, 16(2), 606-610. https://doi.org/10.1038/s41396-021-01098-3
Isojunno, S., von Benda-Beckmann, A. M., Wensveen, P. J., Kvadsheim, P. H., Lam, F.-P. A., Gkikopoulou, K., Pöyhönen, V., Tyack, P. L., Benti, B., Foskolos, I., Bort, J., Neves, M., Biassoni, N. & J. O. Miller, P. (2022). Sperm whales exhibit variation in echolocation tactics with depth and sea state but not naval sonar exposures. Marine Mammal Science, 38(2), 682-704. https://doi.org/10.1111/mms.12890
Alstrup, A. K. O., Thostesen, C. B., Jensen, B., Wang, T., Jensen, M. P., Johansson, D. K., Lind Nielsen, T. & Jensen, T. K. (2022). Strandede læderskildpadder i Danmark. Habitat, 2022(25), 6-17.
Sand-Jensen, K., Riis, T., Kjær, J. E. & Martinsen, K. T. (2022). Stream-lake connectivity is an important control of fluvial CO2 concentrations and emissions in catchments. Earth and Space Science, 9(12), Artikel e2022EA002664. https://doi.org/10.1029/2022EA002664
Jorgensen, T. H. (2022). Studiegrupper til aktiv førsteårs-integration. Interaktiv produktion, AU Educate.