Publikationer

Følg med i de senest publicerede videnskabelige artikler fra Institut for Biologi. Oversigten viser Instituttets publikationer med de nyeste øverst:

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Arge, L. A., Procopiuc, O., Ramaswamy, S., Suel, T., Vahrenhold, J. & Vitter, J. S. (2000). A Unified Approach for Indexed and Non-indexed Spatial Joins. I C. Zaniolo, P. C. Lockemann, M. H. Scholl & T. Grust (red.), Advances in Database Technology - EDBT 2000: 7th International Conference on Extending Database Technology Konstanz, Germany, March 27-31, 2000 Proceedings (s. 413-429). Springer. https://doi.org/10.1007/3-540-46439-5_29

Arge, L. A., Samoladas, V. & Vitter, J. S. (1999). On two-dimensional indexability and optimal range search indexing. I Proceedings of the eighteenth ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems (s. 346-357). Association for Computing Machinery. https://doi.org/10.1145/303976.304010

Rezende, J. R. D., Hubert, C., Kjeldsen, K. U., Loy, A., Müller, A., Wagner, M. & Jørgensen, B. B. (2010). Abundance and similarity of endospores of thermophilic sulfate-reducing bacteria in cold marine sediments of Aarhus Bay (56N) and Svalbard (79N). Abstract fra 13th International Symposium on Microbial Ecology (ISME-13), Seattle, USA.

Müller, A., Rezende, J. R. D., Hubert, C., Kjeldsen, K. U., Wagner, M., Jørgensen, B. B. & Loy, A. (2010). Tracking heat-lovers in the cold: towards a global phylogeography of thermophilic spore-forming bacteria in marine sediments.. Poster-session præsenteret på 13th International Symposium on Microbial Ecology (ISME-13), Seattle, USA.

Agarwal, P. K., Arge, L. A., Brodal, G. S. & Vitter, J. S. (1999). I/O-efficient dynamic point location in monotone planar subdivisions. I Proceedings of the tenth annual ACM-SIAM symposium on Discrete algorithms (s. 11-20). Association for Computing Machinery.

Arge, L. A., Procopiuc, O., Ramaswamy, S., Suel, T. & Vitter, J. S. (1998). Scalable Sweeping-Based Spatial Join. I Proceedings of 24th Annual International Conference on Very Large Databases

Arge, L. A., Procopiuc, O., Ramaswamy, S., Suel, T. & Vitter, J. S. (1998). Theory and practice of I/O-efficient algorithms for multidimensional batched searching problems. I Proceedings of the ninth annual ACM-SIAM symposium on Discrete algorithms (s. 685-694). Association for Computing Machinery.

Kjeldsen, E., Hübner, G. M., Tordrup, D. P., Knudsen, B. R. & Andersen, F. F. (2010). Topoisomerase I Deficiency Results in Chromosomal Alterations in Cervical Cancer Cells. Anticancer Research, 30, 3257-3265.

Subramani, R., Jensen, S. J., Rotaru, A., Andersen, F. F., Gothelf, K. V., Mamdouh, W., Besenbacher, F., Dong, M. & Knudsen, B. R. (2010). A Novel Secondary DNA Binding Site in Human Topoisomerase I Unravelled by using a 2D DNA Origami Platform. A C S Nano, 4, 5969-77.

Baattrup-Pedersen, A., Dalkvist, D., Dybkjær, J. B., Riis, T., Larsen, S. E. & Kronvang, B. (2013). Species recruitment following flooding, sediment deposition and seed addition in restored riparian areas. Restoration Ecology, 21(3), 399-408.

Agarwal, P. K., Arge, L. A., Murali, T. M., Varadarajan, K. R. & Vitter, J. S. (1998). I/O-efficient algorithms for contour-line extraction and planar graph blocking. I Proceedings of the ninth annual ACM-SIAM symposium on Discrete algorithms (s. 117-126). Association for Computing Machinery.

Petersen, K. D., Nielsen, S. B., Clausen, O. R., Stephenson, R. A. & Gerya, T. (2010). Small-Scale Mantle Convection Produces Stratigraphic Sequences in Sedimentary Basins. Science, 329(5993), 827 - 830. https://doi.org/10.1126/science.1190115

Skov, T., Buchaca, T., Amsinck, S. L., Landkildehus, F., Odgaard, B. V., Azevedo, J., Goncalves, V., Raposeiro, P. M., Andersen, T. J. & Jeppesen, E. (2010). Using invertebrate remains and pigments in the sediment to infer changes in trophic structure after fish introduction in Lake Fogo: a crater lake in the Azores. Hydrobiologia, 654, 13-25. https://doi.org/10.1007/s10750-010-0325-5

Fadista, J., Zhan, B., Hedegaard, J. & Bendixen, C. (2010). Structural variation in the pig genome using next-generation sequencing. Poster-session præsenteret på Conference of the International Society for Animal Genetics, ISAG 2010, Edinburgh, Storbritannien.

Zhan, B., Hedegaard, J., Bendixen, C. & Panitz, F. (2010). Analysis of global variation in pig: Discovery of novel SNPs by whole genome re-sequencing. Poster-session præsenteret på Conference of the International Society for Animal Genetics, ISAG 2010, Edinburgh, Storbritannien.

Nielsen, M., Hedegaard, J., Skovgaard, K., Heegaard, P. M., Bendixen, C. & Thomsen, B. (2010). Expression profiling of mRNA and microRNA in pigs infected with Actinobacillus pleuropneumoniae. Poster-session præsenteret på Conference of the International Society for Animal Genetics, ISAG 2010, Edinburgh, Storbritannien.

Hedegaard, J., Schou, K. K., Skovgaard, K., Zhan, B., Panitz, F., Hornshøj, H., Heegaard, P. M., Angen, Ø., Boye, M. & Bendixen, C. (2010). The porcine systemic response to pleuropneumonia studied by transcriptional profi ling of liver and tracheobronchial lung lymph nodes using multiplexed mRNA-Seq: P5040. Poster-session præsenteret på Conference of the International Society for Animal Genetics, ISAG 2010, Edinburgh, Storbritannien.

Arge, L. A., Ferragina, P., Grossi, R. & Vitter, J. S. (1997). On sorting strings in external memory. I Proceedings of the twenty-ninth annual ACM symposium on Theory of computing (s. 540-548). Association for Computing Machinery. https://doi.org/10.1145/258533.258647

Hansen, M. B., Seidler, P., Gyorffy, W. & Christiansen, O. (2010). A Lanczos--chain Driven Approach for Calculating Damped Vibrational Configuration Interaction Response Functions. Journal of Chemical Physics, 133, 114102. https://doi.org/10.1063/1.3467889

Meierhenrich, U., Filippi, J.-J., Meinert, C., Bredehoft, J. H., Takahashi, J., Nahon, L., Jones, N. C. & Hoffmann, S. V. (2010). Circular Dichroism of Amino Acids in the Vacuum-Ultraviolet Region. Angewandte Chemie International Edition, 49(42), 7799-7802. https://doi.org/10.1002/anie.201003877

Andersen, T. R., Huuse, M., Jørgensen, F. & Christensen, S. (2012). Seismic investigations of buried tunnel valleys on- and offshore Denmark. Geological Society, London, Special Publications, 368, 129-144. https://doi.org/10.1144/SP368.14

Busk, M., Munk, O. L., Jakobsen, S., Wang, T., Skals, M., Steiniche, T., Horsman, M. R. & Overgaard, J. (2010). Assessing hypoxia in animal tumor models based on pharmocokinetic analysis of dynamic FAZA PET. Acta Oncologica, 49(7), 922-33. https://doi.org/10.3109/0284186X.2010.503970

Larsen, J. V., Hansen, M., Møller, B. K., Madsen, P. S., Scheller, J., Nielsen, M. S. & Petersen, C. M. (2010). Sortilin Facilitates Signaling of Ciliary Neurotrophic Factor and Related Helical Type 1 Cytokines Targeting the gp130/Leukemia Inhibitory Factor Receptor β Heteromer. Molecular and Cellular Biology, 30(17), 4175-4187.

Mølmer, K. (2010). Kvantemekanik: Atomernes vilde verden. Aarhus Universitetsforlag.

Sarup, P. M., Sørensen, P. & Loeschcke, V. (2011). Flies selected for longevity retain a young gene expression profile. Age (Omaha), 33, 69-80. https://doi.org/10.1007/s11357-010-9162-8

Gerard, C., Møller, J. S. & Rasmussen, M. G. (2011). Asymptotic completeness in quantum field theory: translation invariant Nelson type models restricted to the vacuum and one-particle sectors. Letters in Mathematical Physics, 95(2), 109-134. https://doi.org/10.1007/s11005-010-0445-x

Baisner, A. J., Andersen, J. L., Findsen, A., Granath, S., Madsen, K. Ø. & Desholm, M. (2010). Minimizing Collision Risk Between Migrating Raptors and Marine Wind Farms: Development of a Spatial Planning Tool. Environmental Management (New York), 46(5), 801-808. https://doi.org/10.1007/s00267-010-9541-z

Arge, L. A. (1995). The I/O-complexity of Ordered Binary-Decision Diagram manipulation: Extended Abstract. I J. Staples, P. Eades, N. Katoh & A. Moffat (red.), Algorithms and Computations: 6th International Symposium, ISAAC '95 Cairns, Australia, December 4-6, 1995 Proceedings (s. 82-91). Springer. https://doi.org/10.1007/BFb0015411

Hjermitslev, H. H. (2010). Danes commemorating Darwin: apes and evolution at the 1909 anniversary. Annals of Science, 67(4), 485-525. https://doi.org/10.1080/00033790.2010.495316

Arge, L. A., Knudsen, M. & Larsen, K. (1993). A general lower bound on the I/O-complexity of comparison-based algorithms. I F. Dehne, J.-R. Sack, N. Santoro & S. Whitesides (red.), Algorithms and Data Structures: Third Workshop, WADS '93 Montréal, Canada, August 11-13, 1993 Proceedings (s. 83-94). Springer. https://doi.org/10.1007/3-540-57155-8_238

Arge, L. A., Cachin, C., Jurdzinski, T. & Tarlecki, A. (red.) (2007). Automata, Languages and Programming: 34th International Colloquium, ICALP 2007, Wroclaw, Poland, July 9-13, 2007. Proceedings. Springer. Lecture Notes in Computer Science Bind 4596 https://doi.org/10.1007/978-3-540-73420-8

Hayashi, Y., Engelmann, P., Foldbjerg, R., Wang, J., Scott-Fordsmand, J. J., Sutherland, D. & Heckmann, L.-H. (2010). Invertebrate models in nanotoxicology: characterising stress responses of earthworm coelomocytes to nanosilver in vitro. Poster-session præsenteret på Third International Nano Bio Conference 2010, Zurich, Schweiz.

Verhoeven, J. T. A. & Sorrell, B. K. (2010). Plant adaptations and microbial processes in wetlands. Annals of Botany, 105, 127.

Mailund, T. & Westergaard, M. (2004). Obtaining Memory-Efficient Reachability Graph. I K. Jensen & A. Podelski (red.), Tools and Algorithms for the Construction and Analysis of Systems: 10th International Conference, TACAS 2004, Held as Part of the Joint European Conferences on Theory and Practice of Software, ETAPS 2004, Barcelona, Spain, March 29 - April 2, 2004. Proceedings (s. 177-191). Springer.

Jensen, K. (red.) (1992). Application and Theory of Petri Nets. Springer. Lecture Notes in Computer Science Bind 616 https://doi.org/10.1007/3-540-55676-1

Seebach, J. A. (2010). On Reduced Amalgamated Free Products of C*-algebras and the MF-Property. arxiv.org. http://arxiv.org/abs/1004.3721

Scherer, M., Lücke, B., Gebreyesus, G., Topic, O., Deuretzbacher, F., Ertmer, W., Santos, L., Arlt, J. & Klempt, C. (2010). Spontaneous Breaking of Spatial and Spin Symmetry in Spinor Condensates. Physical Review Letters, 105(13), 135302. https://doi.org/10.1103/PhysRevLett.105.135302

Andersen, H. (2010). Joint acceptance and scientific change: A case study. Episteme, 7(3), 248-265.

Jensen, K. (red.) (2004). Fifth Workshop and Tutorial on Practical Use of Coloured Petri Nets and the CPN Tools: Aarhus, Denmark, October 8-11, 2004. Department of Computer Science, Aarhus University.

Langdal, J., Kjærgaard, M. B., Toftkjær, T. & Schougaard, K. R. (2010). Exposing Position Uncertainty in Middleware. I S. Terzis & L. Veiga (red.), Proceedings of the Second International Workshop on Middleware for Pervasive Mobile and Embedded Computing (M-MPAC 2010) (s. Article no. 1). Association for Computing Machinery. https://doi.org/10.1145/1890791.1890792

Schougaard, K. R. & Langdal, J. (2010). Model-based Translucency in Middleware: Supporting Seamful Development. I S. Terzis & L. Veiga (red.), Proceedings of the 2nd International Workshop on Middleware for Pervasive Mobile and Embedded Computing : M-MPAC'10 (s. Article No. 6 ). Association for Computing Machinery. https://doi.org/10.1145/1890791.1890797

Gjelstrup, L. C., Boesen, T., Kragstrup, T. W., Jørgensen, A., Klein, N. J., Thiel, S., Deleuran, B. & Vorup-Jensen, T. (2010). Shedding of Large Functionally Active CD11/CD18 Integrin Complexes from Leukocyte Membranes during Synovial Inflammation Distinguishes Three Types of Arthritis through Differential Epitope Exposure. Journal of Immunology, 185(7), 4154-68. https://doi.org/10.4049/jimmunol.1000952

Jensen, K. (1987). Coloured Petri Nets: A way to describe and analyse real-world systems - without drowning in unnecessary details. I Proceedings of the fifth International Conference on Systems Engineering (s. 395-401). IEEE.

Andersen, J. E., Bene, A., Meilhan, J.-B. O. T. & Penner, R. (2010). Finite type invariants and fatgraphs. Advances in Mathematics, 225(4), 2117-2161. https://doi.org/10.1016/j.aim.2010.04.008

Arge, L. A. (2003). Implementing External Memory Algorithms and Data Structures. I Proceedings of 5th Workshop on Algorithm Engineering and Experiments Society for Industrial and Applied Mathematics.

Arge, L. A., Barve, R., Hutchinson, D., Procopiuc, O., Toma, L., Vengroff, D. E. & Wickeremsinghe, R. (2002). TPIE: User Manual and Reference. (082902 udg.) Duke University Press. http://www.cs.duke.edu/TPIE/tpie.pdf

Arge, L. A. (2001). External Memory Data Structures. I F. M. A. D. Heide (red.), Algorithms - ESA 2001: 9th Annual European Symposium Århus, Denmark, August 28-31, 2001 Proceedings (s. 1-29). Springer. https://doi.org/10.1007/3-540-44676-1_1

Arge, L. A. (2001). Some Algorithmic Research Challenges and Opportunitiesin Geospatial Applications.

Arge, L. A., Ferragina, P., Grossi, R. & Vitter, J. S. (1997). Sequeance sorting in secondary storage. I Compression and Complexity of Sequences 1997. Proceedings (s. 329-346). IEEE. https://doi.org/10.1109/SEQUEN.1997.666927

Agarwal, P. K., Arge, L. A. & Yi, K. (2006). I/O-Efficient Batched Union-Find and Its Applications to Terrain Analysis. I Proceedings of the twenty-second annual symposium on Computational geometry (s. 167-176). Association for Computing Machinery. https://doi.org/10.1145/1137856.1137884

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