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Publikationer

Følg med i de senest publicerede videnskabelige artikler fra Institut for Biologi. Oversigten viser Instituttets publikationer med de nyeste øverst:

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Hansen, K. A., Miltersen, P. B. & Vinay, V. (2003). Circuits on Cylinders. I Fundamentals of Computation Theory (s. 171-182). Springer. https://doi.org/10.1007/978-3-540-45077-1_17
Hansen, K. M. (2003). Activity-Centred Tool Integration: Using Type-Based Publish/Subscribe for Peer-to-Peer Tool Integration. I A. Schürr & H. Dörr (red.), Proceedings of TIS 2003 Workshop on Tool Integration in System Development (s. 11-16). Association for Computing Machinery.
Hansen, K. M. (2001). Fluid Interfaces: Supporting Specific, General, and Minimal Interaction. I O. W. Bertelsen (red.), Proceedings of The First Danish Human-Computer Interaction Research Symposium (s. 25-26). Aarhus Universitet.
Hansen, K. M. (2004). Thoth - A Publish/Subscribe Architecture for Peer-to-Peer Tool Integration. International Journal on Software Tools for Technology Transfer, 6(3), 219-230. https://doi.org/10.1007/s10009-004-0156-7
Hansen, K. M. & Christensen, H. B. (2004). Component Reengineering Workshops: A Low-Cost Approach for Assessing Specific Reengineering Costs Across Product Lines. I Proceedings of the 8th European Conference on Software Maintenance and Reengineering 2004 (s. 154-162). IEEE Computer Society Press. https://doi.org/10.1109/CSMR.2004.1281416
Hansen, K. M., MacIntyre, B., Mynatt, E. D., Tullio, J. & Voida, S. (2001). Hypermedia in the Kimura System: Using Spacial, Temporal and Navigational Relationships to Support Multitasking and Background Awareness. I Proceedings of the twelfth ACM Conference on Hypertext and Hypermedia (Bind Posters). ACM Press New York, NY, USA.
Hansen, K. M. & Ratzer, A. V. (2002). Tool Support for Collaborative Teaching and Learning of Object-Oriented Modelling. I Proceedings of the 7th annual conference on Innovation and technology in computer science education (s. 146-150). Association for Computing Machinery. https://doi.org/10.1145/544414.544458
Hansen, T. R. (2004). Socio-Technical Experiments - A New Approach on the Design Process. Electronic Colloquium on Computational Complexity, (CfPC 2004-PP-57).
Hein, J., Pedersen, C. N. S. & Jensen, J. L. (2002). Recursions for Statistical Multiple Alignment. Proceedings of the National Academy of Sciences (PNAS), 100(25), 14960-14965.
Iversen, J. & Mosses, P. D. (red.) (2002). Type Inference for the New Action Notation. Afhandling præsenteret på International Workshop on Action Semantics (AS 2002), København, Danmark.
Iversen, J. & Mosses, P. D. (2004). Constructive Action Semantics for Core ML. BRICS Report Series, (RS-04-37).
Iversen, O. S., Kanstrup, A. M. & Petersen, M. G. (2004). A Visit to the 'New Utopia': Revitalizing Democracy, Emancipation and Quality in Co-Operative Design. I ACM International Conference Proceeding Series: Proceedings of the third Nordic conference on Human-computer interaction (Bind 82, s. 171-179). Association for Computing Machinery. https://doi.org/10.1145/1028014.1028040
Jagota, A., Lyngsø, R. B., Pedersen, C. N. S., Gascuel, O. (red.) & Moret, B. M. E. (red.) (2001). Comparing Hidden Markov Model and a Stochastic Context-Free Grammer. I Proceedings of the First International Workshop on Algorithms in Bioinformatics (2149 of Lecture Notes in Computer Science udg., Bind Volume 2149/2001, s. 69-94). Springer.
Jensen, M. & Søgaard, M. (2004). Refocusing the Contextual Turn: The Forgotten Construction of Meaning at the Interface. I Ikke angivet (s. 185-188). Association for Computing Machinery.
Jurdzinski, M., Nielsen, M. & Srba, J. (2003). Undecidability of Domino Games and Hhp-Bisimilarity. Information and Computation, 184(2), 343-368. https://doi.org/10.1016/S0890-5401(03)00064-6
Jørgensen, J. B. & Moldt, D. (red.) (2004). CPN Models as Enhancements to a Traditional Software Specification for an Elevator Controller. I Ikke angivet (PB-571 of Daimi Reports udg., s. 99-116). Aarhus Universitet.
Jørgensen, J. B., Aalst, W. M. P. V. D. (red.) & Best, E. (red.) (2003). Coloured Petri Nets in Development of a Pervasive Health Care System. I Ikke angivet (2679 of Lecture Notes in Computer Science udg., Bind 2679/2003, s. 256-275). Springer.
Jørgensen, J. B. & Jensen, K. (red.) (2002). Coloured Petri Nets in UML-Based Software Development: Designing Middleware for Pervasive Healthcare. I Ikke angivet (DAIMI PB-560 udg., s. 61-80). Department of Computer Science, University of Aarhus.
Jørgensen, J. B., Bossen, C., Benyon, D. (red.), Moody, P. (red.), Gruen, D. (red.) & McAra-McWilliam, I. (red.) (2004). Context-descriptive Prototypes and Their Application to Medicine Administration. I Ikke angivet (s. 297-306). Society for Industrial and Applied Mathematics.
Jørgensen, J. B., Bossen, C., Giese, H. (red.) & Kruger, I. (red.) (2004). Executable Use Cases as Links Between Application Domain Requirements and Machine Specifications. I Proceedings of the 26th International Conference on Software Engineering: 3rd Workshop on Scenarios and State Machines: Models, Algorithms, and Tools IEEE.
Jørgensen, J. B., Bossen, C. & Wieringa, R. (red.) (2003). Requirements Engineering for a Pervasive Health Care System. I Ikke angivet (s. 55-64). IEEE.
Jørgensen, J. B., Christensen, S., Jezequel, J.-M. (red.), Hussmann, H. (red.) & Cook, S. (red.) (2002). Executable Design Models for a Pervasive Healthcare Middleware System. I Lecture Notes In Computer Science: 5th International Conference on The Unified Modeling Language (Bind 2460, s. 140-149). Springer.
Jørgensen, J. B., Christensen, S., Desel, J. (red.), Reisig, W. (red.) & Rozenberg, G. (red.) (2004). Teaching Coloured Petri Nets: Examples of Courses and Lessons Learned. I Proceedings of Advances Course on Petri Nets (Eichstatt) (3098 i Lecture Notes in Computer Science udg., s. 402-412). Springer.
Jørgensen, J. B., Christensen, S., Tuovinen, A., Xu, J., Steffen, B. (red.) & Margaria, T. (red.) (2004). Estimation of Memory Usage of Mobile Phone Software Using UML and Coloured Petri Nets. Afhandling præsenteret på 1st International Symposium on Leveraging Applications of Formal Methods (ISOLA 2004), Paphos, Cypern.
Kaptelinin, V., Nardi, B., Bødker, S., Carroll, J., Hollan, J., Hutchins, E. & Winograd, T. (2003). Post-cognitivist HCI: second-wave theories. I G. Cockton & P. Korhonen (red.), Ikke angivet (s. 692-693). Association for Computing Machinery. https://doi.org/10.1145/765891.765933
Kejser, T. & Grønbæk, K. (2003). The Gaia Framework: Version Support In Web Based Open Hypermedia. I P. Isaías & N. Karmakar (red.), Proceedings of the IADIS International Conference on WWW/Internet 2003 (s. 314-325). International Association for Development, IADIS.
Kirchner, H. & Mosses, P. D. (2001). Algebraic Specifications, Higher-order Types and Set-theoretic Models. Journal of Logic and Computation, 11(3), 453-481.
Klarlund, N. & Møller, A. (2001). MONA Version 1.4 User Manual. BRICS Notes Series, (NS-01-1).
Klarlund, N., Møller, A. & Schwartzbach, M. I. (2002). MONA Implementation Secrets. International Journal of Foundations of Computer Science, 13(4), 571-586. https://doi.org/10.1142/S012905410200128X
Klarlund, N., Møller, A. & Schwartzbach, M. I. (2002). The DSD Schema Language. Automated Software Engineering, 9(3), 285-319. https://doi.org/10.1023/A:1016376608070
Kohlenbach, U. & Lambov, B. (2003). Bounds on Iterations of Asymptotically Quasi-Nonexpansive Mappings. BRICS Report Series, (RS-03-51).
Kohlenbach, U., Lambov, B., Falset, J. (red.), Fulster, E. (red.) & Sims, B. (red.) (2004). Bounds on Iterations of Asymptotically Quasi-non-expansive Mappings. I International Conference on Fixed Point Theory and Applications, Valencia 2003 (s. 143-172). Yokohama Publishers.
Korhonen, I. & Bardram, J. E. (2004). Introduction to this special issue on Pervasive Healthcare. IEEE Transactions on Information Technology in Biomedicine, 8(3), 229-234.
Krieg-Brückner, B., Mosses, P. D. & Mosses, P. D. (red.) (2004). Casl Summary. I Casl Reference Manual, The Complete Documentation of the Common Algebraic Specification Language (2960 i Lecture Notes in Computer Science udg., s. 1-69). Springer.
Krieg-Brückner, B., Mosses, P. D. & Mosses, P. D. (red.) (2004). Casl Syntax. I Casl Reference Manual, The Complete Documentation of the Common Algebraic Specification Language (2960 i Lecture Notes in Computer Science udg., s. 71-112). Springer.
Krink, T., van Kooten Niekerk, K. (red.) & Buhl, H. (red.) (2004). Complexity and the Computing Age: Can Computers Really Help to Understand Complex Phenomena in Nature? I The Significance of Complexity (s. 47-73). Ashgate publishing.
Krink, T., Filipic, B., Fogel, G. B. & Thomsen, R. (2004). Noisy Optimization Problems - A Particular Challenge for Differential Evolution? I Ikke angivet (s. 332-339). IEEE Press.
Krink, T., Løvbjerg, M., Guervós, J. J. M. (red.), Adamidis, P. (red.), Beyer, H.-G. (red.), Fernández-Villacañas Martin, J.-L. (red.) & Schwefel, H.-P. (red.) (2002). The LifeCycle model: Combining Particle Swarm Optimisation, Genetic Algorithms and HillClimbers. I Lecture Notes in Computer Science: Parallel Problem Solving from Nature --- PPSN VII (Bind 2439, s. 621-630). Springer.
Krink, T. & Paterlini, S. (2006). Differential Evolution and Particle Swarm Optimization for Partitional Clustering. Computational Statistics & Data Analysis, 50/5(446), 27.
Krink, T. & Thomsen, R. (2001). Self-Organized Criticality and Mass Extinction in Evolutionary Algorithms. I Proceedings of the Third Congress on Evolutionary Computation (CEC 2001).: Vol. 2 (Bind 2, s. 1155-1161). IEEE.
Krink, T., Ursem, R. K., Filipic, B., Spector, L. (red.), Goodman, E. D. (red.), Wu, A. (red.), Langdon, W. B. (red.), Voigt, H. (red.), Gen, M. (red.), Sen, S. (red.), Dorio, M. (red.), Pezeshk, S. (red.), Garzon, M. H. (red.) & Burke, E. (red.) (2001). Evolutionary Algorithms in Control Optimization: The Greenhouse Problem. I GECCO 2001: Proceedings of the Genetic and Evolutionary Computation Conference (s. 440-447). Morgan Kaufmann.
Krink, T., Vesterstrøm, J. S., Riget, J., Fogel, D. B. (red.), Yao, X. (red.), Greenwood, G. (red.), Iba, H. (red.), Marrow, P. (red.) & Shackleton, M. (red.) (2002). Particle Swarm Optimisation with Spatial Particle Extension. I Proceedings of the Evolutionary Computation on 2002. CEC '02.: Proceedings of the 2002 Congress (Bind 02, s. 1474-1479). IEEE.
Kristensen, J. F., Eriksen, M. A., Iversen, O. S., Kanstrup, A. M., Nielsen, C. & Petersen, M. G. (2003). Young People In Old Cars - Challenges For Cooperative Design. Afhandling præsenteret på Information systems research seminar in Scandinavia (IRIS 26) 9-12 August 2003, Haikko Manor, Finland.
Kristensen, L. M. (2004). Using Coloured Petri Nets in the Development of Protocols for Ad-Hoc Networking. I Proceedings of 3rd International Workshop on Integration and Specification Techniques for Applications in Engineering (s. 12-13)

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Abraham, A. J., Duvall, E., Ferraro, K., Webster, A. B., Doughty, C. E., le Roux, E. & Ellis-Soto, D. (2023). Understanding anthropogenic impacts on zoogeochemistry is essential for ecological restoration. Restoration Ecology, 31(3), Artikel e13778. https://doi.org/10.1111/rec.13778
Donfrancesco, V., Allen, B. L., Appleby, R., Behrendorff, L., Conroy, G., Crowther, M. S., Dickman, C. R., Doherty, T., Fancourt, B. A., Gordon, C. E., Jackson, S. M., Johnson, C. N., Kennedy, M. S., Koungoulos, L., Letnic, M., Leung, L. K. P., Mitchell, K. J., Nesbitt, B., Newsome, T. ... Cairns, K. M. (2023). Understanding conflict among experts working on controversial species: A case study on the Australian dingo. Conservation Science and Practice, 5(3), Artikel e12900. https://doi.org/10.1111/csp2.12900
Pos, E., de Souza Coelho, L., de Andrade Lima Filho, D., Salomão, R. P., Amaral, I. L., de Almeida Matos, F. D., Castilho, C. V., Phillips, O. L., Guevara, J. E., de Jesus Veiga Carim, M., López, D. C., Magnusson, W. E., Wittmann, F., Irume, M. V., Martins, M. P., Sabatier, D., da Silva Guimarães, J. R., Molino, J. F., Bánki, O. S. ... ter Steege, H. (2023). Unraveling Amazon tree community assembly using Maximum Information Entropy: a quantitative analysis of tropical forest ecology. Scientific Reports, 13(1), Artikel 2859. https://doi.org/10.1038/s41598-023-28132-y
Bonte, D., Rose, C., Bastiaensen, T., Jesper Bechsgaard, J., Bilde, T., Dahirel, M., De Wolf, K., Thylys, H., Uytterschaut, T. & Vanthournout, B. (2023). Urbanization impacts short- but not long-distance natal dispersal in a common orb web spider. Oikos, 2023(12), Artikel e10278. https://doi.org/10.1111/oik.10278
Hsu, Y. H. H., Pintacuda, G., Liu, R., Nacu, E., Kim, A., Tsafou, K., Petrossian, N., Crotty, W., Suh, J. M., Riseman, J., Martin, J. M., Biagini, J. C., Mena, D., Ching, J. K. T., Malolepsza, E., Li, T., Singh, T., Ge, T., Egri, S. B. ... Wellcome Trust Case Control Consortium (2023). Using brain cell-type-specific protein interactomes to interpret neurodevelopmental genetic signals in schizophrenia. iScience, 26(5), Artikel 106701. https://doi.org/10.1016/j.isci.2023.106701
Wich, S. A., Bonnin, N., Hutschenreiter, A., Piel, A. K., Chitayat, A., Stewart, F. A., Pintea, L. & Kerby, J. T. (2023). Using Drones to Determine Chimpanzee Absences at the Edge of Their Distribution in Western Tanzania. Remote Sensing, 15(8), Artikel 2019. https://doi.org/10.3390/rs15082019
Davison, C. W., Assmann, J. J., Normand, S., Rahbek, C. & Morueta-Holme, N. (2023). Vegetation structure from LiDAR explains the local richness of birds across Denmark. Journal of Animal Ecology, 92(7), 1332-1344. https://doi.org/10.1111/1365-2656.13945
Montes, C. A., Ortiz, N. V., Arias, C. A. & Chaparro, T. R. (2023). Vertical flow wetlands as the core for the sustainable treatment of coffee wastewater in small communities in Colombia: preliminary results . Water science and technology : a journal of the International Association on Water Pollution Research, 88(8), 1974-1981. https://doi.org/10.2166/wst.2023.328
Panyadee, P., Wangpakapattanawong, P., Inta, A. & Balslev, H. (2023). Very High Food Plant Diversity among Ethnic Groups in Northern Thailand. Diversity, 15(1), Artikel 120. https://doi.org/10.3390/d15010120
Nachtsheim, D. A., Johnson, M., Schaffeld, T., van Neer, A., Madsen, P. T., Findlay, C. R., Rojano-Doñate, L., Teilmann, J., Mikkelsen, L., Baltzer, J., Ruser, A., Siebert, U. & Schnitzler, J. G. (2023). Vessel noise exposures of harbour seals from the Wadden Sea. Scientific Reports, 13, Artikel 6187. https://doi.org/10.1038/s41598-023-33283-z
Rysgaard, S. (2023). Water masses along west Greenland and their implication for glacier melt. Abstract fra Arctic International Technical Conference, Nuuk, Ecuador.
Nielsen, L. (2023). Water Uptake of Airborne Primary Bioaerosols. [Ph.d.-afhandling, Aarhus Universitet]. Aarhus Universitet.
Pulido, F., Castagneyrol, B., Rodríguez-Sánchez, F., Cáceres, Y., Pardo, A., Moracho, E., Kollmann, J., Valladares, F., Ehrlén, J., Jump, A. S., Svenning, J. C. & Hampe, A. (2023). Widespread latitudinal asymmetry in the performance of marginal populations: A meta-analysis. Global Ecology and Biogeography, 32(6), 842-854. https://doi.org/10.1111/geb.13665
Catalán, N., Anton-Pardo, M., Freixa, A., Rodríguez-Lozano, P., Bartrons, M., Bernal, S., Genua-Olmedo, A., Mendoza-Lera, C., Onandía, G., Benito, X., Sánchez-Montoya, M. M., Cañedo-Argüelles Iglesias, M., Pastor, A. & Lupon, A. (2023). Women in limnology: From a historical perspective to a present-day evaluation. WIREs Water, 10(1), Artikel e1616. https://doi.org/10.1002/wat2.1616
Irschick, D. J., Christiansen, F., Hammerschlag, N., Martin, J., Madsen, P. T., Wyneken, J., Brooks, A., Gleiss, A., Fossette, S., Siler, C., Gamble, T., Fish, F., Siebert, U., Patel, J., Xu, Z., Kalogerakis, E., Medina, J., Mukherji, A., Mandica, M. ... Lauder, G. (2022). 3D visualization processes for recreating and studying organismal form. iScience, 25(9), Artikel 104867. https://doi.org/10.1016/j.isci.2022.104867
Baker, W. J., Bailey, P., Barber, V., Barker, A., Bellot, S., Bishop, D., Botigué, L. R., Brewer, G., Carruthers, T., Clarkson, J. J., Cook, J., Cowan, R. S., Dodsworth, S., Epitawalage, N., Françoso, E., Gallego, B., Johnson, M. G., Kim, J. T., Leempoel, K. ... Forest, F. (2022). A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life. Systematic Biology, 71(2), 301-319. https://doi.org/10.1093/sysbio/syab035
Zhang, Y., Wang, L., He, Y., Huang, N., Li, W., Xu, S., Zhou, Q., Song, W., Duan, W., Wang, X., Muhammad, S., Nath, B., Zhu, L., Tang, F., Du, H., Wang, L. & Niu, Z. (2022). A Continuous Change Tracker Model for Remote Sensing Time Series Reconstruction. Remote Sensing, 14(9), Artikel 2280. https://doi.org/10.3390/rs14092280
Shartau, R. B., Harter, T. S., Baker, D. W., Aboagye, D. L., Allen, P. J., Val, A. L., Crossley, D. A., Kohl, Z. F., Hedrick, M. S., Damsgaard, C. & Brauner, C. J. (2022). Acute CO2 tolerance in fishes is associated with air breathing but not the Root effect, red cell βNHE, or habitat. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology, 274, Artikel 111304. https://doi.org/10.1016/j.cbpa.2022.111304
Aagaard, A. (2022). Adaptation and plasticity in a social spider species with low genetic diversity. [Ph.d.-afhandling, Aarhus Universitet]. Aarhus Universitet.
Whitehead, D. A., Ayres, K. A., Gayford, J. H., Ketchum, J. T., Galván-Magana, F. & Christiansen, F. (2022). Aerial photogrammetry of whale sharks (Rhincodon typus) in the Bay of La Paz, using an unoccupied aerial vehicle. Marine Biology, 169(7), Artikel 94. https://doi.org/10.1007/s00227-022-04085-0
Fang, Z., Brandt, M., Wang, L. & Fensholt, R. (2022). A global increase in tree cover extends the growing season length as observed from satellite records. Science of the Total Environment, 806(Part 3), Artikel 151205. https://doi.org/10.1016/j.scitotenv.2021.151205
Agersnap, S. (2022). Analysis of coastal marine biodiversity using environmental DNA metabarcoding. [Ph.d.-afhandling, Aarhus Universitet]. Aarhus Universitet.
Cadiz Escobar, M. I., Hansen, M. M., Fox, A. D. & Sørensen, I. H. (2022). Analyzing the demographic history of Melanitta fusca using whole-genome sequencing data. Poster-session præsenteret på Finnish Society for Bioinformatics: Bioinformatics Day 2002, Espoo, Finland.
Vynne, C., Gosling, J., Maney, C., Dinerstein, E., Lee, A. T. L., Burgess, N. D., Fernández, N., Fernando, S., Jhala, H., Jhala, Y., Noss, R. F., Proctor, M. F., Schipper, J., González-Maya, J. F., Joshi, A. R., Olson, D., Ripple, W. J. & Svenning, J. C. (2022). An ecoregion-based approach to restoring the world's intact large mammal assemblages. Ecography, 2022(4). https://doi.org/10.1111/ecog.06098
Perry, S. F. & Wang, T. (2022). A new model for sodium uptake in the zebrafish gill. Acta Physiologica, 234(3), Artikel e13787. https://doi.org/10.1111/apha.13787
Lundgren, E. J., Ramp, D., Middleton, O. S., Wooster, E. I. F., Kusch, E., Balisi, M., Ripple, W. J., Hasselerharm, C. D., Sanchez, J. N., Mills, M. & Wallach, A. D. (2022). A novel trophic cascade between cougars and feral donkeys shapes desert wetlands. Journal of Animal Ecology, 91(12), 2348-2357. https://doi.org/10.1111/1365-2656.13766